scholarly journals Comparative Transcriptomes Profiling of Photoperiod-sensitive Male Sterile Rice Nongken 58S During the Male Sterility Transition between Short-day and Long-day

BMC Genomics ◽  
2011 ◽  
Vol 12 (1) ◽  
Author(s):  
Wei Wang ◽  
Zhenwei Liu ◽  
Zhibin Guo ◽  
Gaoyuan Song ◽  
Qin Cheng ◽  
...  
1996 ◽  
Vol 127 (2) ◽  
pp. 161-167 ◽  
Author(s):  
S. H. Cheng ◽  
H. M. Si ◽  
L. S. Zhuo ◽  
Z. X. Sun

SUMMARYThe use of environmentally induced genetic male sterile (EGMS) rice could alter the development of hybrid rice from a three-line system to a two-line system. It is critical for the utilization of EGMS rice to determine which are the main environmental factors influencing fertility changes. Fertility responses to photoperiod (P) and temperature (T) were studied in 101 EGMS rice lines under nine controlled regimes combining three photoperiods (15·0, 14·0 and 12·5 h)x three temperatures (30·1, 24·1 and 23·1 °C). According to the variance analysis of seed-setting data, 96% of the total EGMS lines studied could be divided into three types as follows: (1) photoperiod-sensitive genetic male sterility (PGMS) characterized statistically by significant (P < 0·05) P and P × T interaction effects but by a non-significant T effect on fertility, (2) thermosensitive genetic male sterility (TGMS) by a significant T effect, a non-significant P effect and by either a significant or a non-significant P × T interaction effect on fertility, and (3) photo-thermosensitive genetic male sterility (P-TGMS) by only a significant P × T interaction effect on fertility. Among the japonica EGMS lines studied, PGMS, TGMS and P-TGMS accounted for 32·3, 9·7 and 51·6%, respectively. However, among the indica EGMS lines, no PGMS lines were detected and most of them were TGMS or P-TGMS (61·4 and 35·7%, respectively). The results indicate that the selection of indica PGMS lines of rice might be very difficult. The availability of different types of EGMS rice in two-line system hybrid rice is evaluated and the selection of an ideal model of response to photoperiod and temperature for indica EGMS is discussed.


HortScience ◽  
2017 ◽  
Vol 52 (8) ◽  
pp. 1052-1053 ◽  
Author(s):  
Michael J. Havey ◽  
Christopher von Kohn

Seed of hybrid onion (Allium cepa L.) is produced using cytoplasmic male sterility (CMS). For the most widely used source of onion CMS, male sterility is conditioned by the interaction of male sterile (S) cytoplasm and the homozygous recessive genotype at the nuclear male fertility locus Ms. Because of the biennial generation time of onion, classical crossing and segregation analyses take years to establish cytoplasms and genotypes at Ms. Numerous molecular markers have been developed to distinguish onion cytoplasms and estimate genotypes at Ms. Two nuclear markers (jnurf13 and AcPms1) have been reported to cosegregate with Ms and correctly predict genotypes in commercial breeding lines and diverse onion germplasm; however, these markers were less predictive for open-pollinated (OP) populations from India. We evaluated the efficacy of jnurf13 and AcPms1 to correctly classify genotypes at Ms using 144 random plants from three OP populations of long-day onion from North America. No recombination events were detected between AcPms1 and the Ms locus and three events occurred between jnurf13 and Ms. Our results support either marker as a useful tool to predict genotypes at Ms in North American populations of onion, with AcPms1 being the better of the two.


Author(s):  
Rongkui Han ◽  
Dean Lavelle ◽  
Maria José Truco ◽  
Richard Michelmore

Abstract Key message A population of lettuce that segregated for photoperiod sensitivity was planted under long-day and short-day conditions. Genetic mapping revealed two distinct sets of QTLs controlling daylength-independent and photoperiod-sensitive flowering time. Abstract The molecular mechanism of flowering time regulation in lettuce is of interest to both geneticists and breeders because of the extensive impact of this trait on agricultural production. Lettuce is a facultative long-day plant which changes in flowering time in response to photoperiod. Variations exist in both flowering time and the degree of photoperiod sensitivity among accessions of wild (Lactuca serriola) and cultivated (L. sativa) lettuce. An F6 population of 236 recombinant inbred lines (RILs) was previously developed from a cross between a late-flowering, photoperiod-sensitive L. serriola accession and an early-flowering, photoperiod-insensitive L. sativa accession. This population was planted under long-day (LD) and short-day (SD) conditions in a total of four field and screenhouse trials; the developmental phenotype was scored weekly in each trial. Using genotyping-by-sequencing (GBS) data of the RILs, quantitative trait loci (QTL) mapping revealed five flowering time QTLs that together explained more than 20% of the variation in flowering time under LD conditions. Using two independent statistical models to extract the photoperiod sensitivity phenotype from the LD and SD flowering time data, we identified an additional five QTLs that together explained more than 30% of the variation in photoperiod sensitivity in the population. Orthology and sequence analysis of genes within the nine QTLs revealed potential functional equivalents in the lettuce genome to the key regulators of flowering time and photoperiodism, FD and CONSTANS, respectively, in Arabidopsis.


2021 ◽  
Vol 12 ◽  
Author(s):  
Hari D. Upadhyaya ◽  
M. Vetriventhan ◽  
Vania C. R. Azevedo

Information on photoperiod and temperature sensitivity of sorghum germplasm is important to identify appropriate sources for developing cultivars with a broad adaptation. The sorghum mini core collection consisting of 242 accessions along with three control cultivars were evaluated for days to 50% flowering (DFL) and plant height in two long-day rainy and two short-day post-rainy seasons, and for grain yield and 100-seed weight in the two post-rainy seasons. Differences in DFL and cumulative growing degree days (CGDD) in the rainy and post-rainy seasons were used to classify the accessions for photoperiod and temperature sensitivity. Results revealed 18 mini core landraces as photoperiod and temperature insensitive (PTINS), 205 as photoperiod sensitive and temperature insensitive (PSTINS), and 19 as photoperiod and temperature-sensitive (PTS) sources. The 19 PTS sources and 80 PSTINS sources took less DFL in the long-day rainy seasons than in the short-day post-rainy season indicating their adaptation to the rainy season and a possible different mechanism than that trigger flowering in the short-day sorghums. In all three groups, several accessions with desirable combinations of agronomic traits were identified for use in the breeding programs to develop climate-resilient cultivars and for genomic studies to identify genes responsible for the photoperiod and temperature responses.


2016 ◽  
Vol 113 (52) ◽  
pp. 15144-15149 ◽  
Author(s):  
Yourong Fan ◽  
Jiangyi Yang ◽  
Sandra M. Mathioni ◽  
Jinsheng Yu ◽  
Jianqiang Shen ◽  
...  

Phased small-interfering RNAs (phasiRNAs) are a special class of small RNAs, which are generated in 21- or 24-nt intervals from transcripts of precursor RNAs. Although phasiRNAs have been found in a range of organisms, their biological functions in plants have yet to be uncovered. Here we show that phasiRNAs generated by the photopheriod-sensetive genic male sterility 1 (Pms1) locus were associated with photoperiod-sensitive male sterility (PSMS) in rice, a germplasm that started the two-line hybrid rice breeding. The Pms1 locus encodes a long-noncoding RNA PMS1T that was preferentially expressed in young panicles. PMS1T was targeted by miR2118 to produce 21-nt phasiRNAs that preferentially accumulated in the PSMS line under long-day conditions. A single nucleotide polymorphism in PMS1T nearby the miR2118 recognition site was critical for fertility change, likely leading to differential accumulation of the phasiRNAs. This result suggested possible roles of phasiRNAs in reproductive development of rice, demonstrating the potential importance of this RNA class as regulators in biological processes.


2000 ◽  
Vol 137 (4) ◽  
pp. 411-418
Author(s):  
X. G. LU ◽  
K. M. YAO ◽  
Q. H. YUAN ◽  
B. CAO ◽  
T. M. MOU ◽  
...  

The genic male-sterile rice (GMSR) sensitive to photoperiod during the panicle development period is a novel type of germplasm in rice, which is sterile under the long-day condition but fertile under the short-day condition. The fertility is also affected by temperature. A number of GMSR lines have been popularly used in commercial seed production of hybrid rice in China. Because the sterility is decided by environmental factors, a set of fertility conversion indices has been proposed to evaluate the usability and to determine the suitable regions for safe application of these male sterile lines. In the present experiment, 13 photoperiod-sensitive (PGMSR) lines that are dominant in China were sown by stages in the field at Hainan Island (18° 14′ N), Quiyang (26° 35′ N) and Wuhan (30° 38′ N) in China. The fertility and sterility were distinguished on the percentage of seed-setting on the bagged panicles (PBS). The fertility conversion indices were determined on the day-length and temperature regimes and on a fertility quantifying model, and comparison was made between the two methods. Results showed that it was feasible to determine the fertility conversion index of GMSR lines based on data of bagged seed-setting rates in experiments of sowing at different times in the field. Of the 13 sterile lines observed, two of the PGMSR were found to be completely sterile when the length of the day exceeded 12·3 h. Five temperature-sensitive (TGMSR) lines had fertility conversion indices of 24 °C. One of the photoperiod- and temperature-sensitive (PTGMSR) lines showed that steady fertility conversion occurred under the short day in spite of high or low temperature. These GMSR lines are adaptable to the conditions of day-length and temperature in the main rice-growing regions of China and thus of high value in application to seed production.


2018 ◽  
Vol 1 (1) ◽  
pp. 59-77 ◽  
Author(s):  
Russel J Reiter ◽  
Dun-Xian Tan ◽  
Ramaswamy Sharma

The discovery of melatonin and its photoperiod-regulated circadian rhythm were important milestones in defining the events associated with the regulation of seasonal reproduction in both short-day and long-day breeding mammals. By means of the seasonal changes in the duration of the nocturnal melatonin rise, which provides both clock and calendar information, animals adjust their reproductive state to the appropriate time of year. Thus, melatonin dictates the proper season for mating which ensures the optimal time for delivery of offspring. The photoperiodic information is transduced into a chemical messenger, melatonin, in the pineal gland. The initial studies related to the importance of day length and the melatonin message in impelling seasonal reproduction involved the use of photoperiod-sensitive rodents, especially several long-day breeding hamster species. Since then, a large group of interested reproductive biologists have extended these findings to numerous other mammals including short-day breeding ungulates. Moreover, critical information related to the molecular processes at the level of the pars tuberalis of the anterior pituitary and the mediobasal hypothalamus has been provided. In this scheme, the pars tuberalis, until recently an almost ignored portion of the adenohypophysis, has been identified as a critical intermediate between the melatonin signal and the functional state of the reproductive organs. It is somewhat ironic that two organs, the pineal gland and the pars tuberalis, which suffered with the image of vestigiality for so long have now been identified as unequivocally essential for this most basic and important function, i.e., regulating seasonal reproduction.


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