scholarly journals Split it up and see: using proxies to highlight divergent inter-populational performances in aquaculture standardised conditions

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Lola Toomey ◽  
Simon Dellicour ◽  
Andrzej Kapusta ◽  
Daniel Żarski ◽  
Frederik Buhrke ◽  
...  
Keyword(s):  
New Species ◽  
Genetic Distance ◽  
Wild Population ◽  
Perca Fluviatilis ◽  
Species Range ◽  
Phenotypic Differentiation ◽  
Allopatric Populations ◽  
Correlation Degree ◽  
Distance Matrices

Abstract Background Considering wild inter-populational phenotypic differentiation can facilitate domestication and subsequent production of new species. However, comparing all populations across a species range to identify those exhibiting suitable key traits for aquaculture (KTA; i.e. important for domestication and subsequent production) expressions is not feasible. Therefore, proxies highlighting inter-populational divergences in KTA are needed. The use of such proxies would allow to identify, prior to bioassays, the wild population pairs which are likely to present differentiations in KTA expressions in aquaculture conditions. Here, we assessed the relevance of three alternative proxies: (i) genetic distance, (ii) habitat divergence, and (iii) geographic/hydrologic distances. We performed this evaluation on seven allopatric populations of Perca fluviatilis for which divergences in KTA had already been shown. Results We showed differences in the correlation degree between the alternative proxy-based and KTA-based distance matrices, with the genetic proxy being correlated to the highest number of KTA. However, no proxy was correlated to all inter-populational divergences in KTA. Conclusion For future domestication trials, we suggest using a multi-proxy assessment along with a prioritisation strategy to identify population pairs which are of interest for further evaluation in bioassays.

scholarly journals Anopheles (Nyssorhynchus) deaneorum: a new species in the albitarsis complex (Diptera: culicidae)

1989 ◽  
Vol 84 (4) ◽  
pp. 535-543 ◽  
Author(s):  
Maria Goreti Rosa-Freitas
Keyword(s):  
New Species ◽  
Genetic Distance ◽  
Adult Female ◽  
Instar Larva ◽  
Fourth Instar ◽  
Type Locality ◽  
Fourth Instar Larva ◽  
External Appearance ◽  
A New Species ◽  
Nei's Genetic Distance

Anopheles (Nyssorhynchus) deaneorum sp. n. is described from specimens collected in Guajará-Mirim, Rondônia state and Rio Branco, Acre state, Brazil, on human and animal baits, inside dwellings and from the progenies of engorged females. A detailed description of the shape of egg, external appearance of adult female and male, genitalias, female cibarial armature and complete chaetotaxy of pupa and larva show that it can be distinguished from Anopheles albitarsis from the type-locality and other areas by the paler general external appearance of the adult, the posterolateral tufts of scales, on the female abdominal terga and the branching of the outer anterior clypeal seta (3-C) of the fourth instar larva (as shown in illustrations). If species can also be distinguished from An. albitarsis from the type locality by the allele frequencies at 11 enzymic loci as represented by Nei's Genetic Distance.

scholarly journals The incredible diversity of Labiobaetis Novikova & Kluge in New Guinea revealed by integrative taxonomy (Ephemeroptera, Baetidae)

ZooKeys ◽  
2018 ◽  
Vol 804 ◽  
pp. 1-136 ◽  
Author(s):  
Thomas Kaltenbach ◽  
Jean-Luc Gattolliat
Keyword(s):  
New Species ◽  
Genetic Distance ◽  
Papua New Guinea ◽  
New Guinea ◽  
Morphological Characters ◽  
Integrative Taxonomy ◽  
On This Island

Material collected between 1999 and 2011 in Papua New Guinea and the Papua Province of Indonesia unveiled the enormous diversity ofLabiobaetison this island. Twenty-six new species were identified and delimited by integrative taxonomy using genetic distance (COI, Kimura-2-parameter) and morphology. These new species are described and illustrated based on larvae, augmenting the total number ofLabiobaetisspecies on the island of New Guinea to 32. Seven morpho-groups of species are proposed based on morphological characters and a key to all New Guinea species is provided. The generic attributes of the larvae are summarised and slightly modified based on the examinations of the new species. Results on the genetics of most species (COI) are also provided. The interspecific K2P distances are between 13% and 32%, the intraspecific distances usually between 0% and 2%. Possible reasons for the remarkable richness of this genus in New Guinea are discussed.

scholarly journals New species of the genus Ypsolopha Latreille, 1796 (Lepidoptera: Ypsolophidae) from the south of the Russian Far East

2020 ◽  
Vol 421 ◽  
pp. 14-26
Author(s):  
M.G. Ponomarenko ◽  
◽  
Keyword(s):  
New Species ◽  
Genetic Distance ◽  
East Asian ◽  
Russian Far East ◽  
Far East ◽  
The South ◽  
Asian Species ◽  
A New Species ◽  
The Russian Far East

An analysis of the mtCOI sequences in the species from the genus Ypsolopha Latreille, 1796 made it possible to confirm a new species for science, Y. occultatella sp. n., morphologically similar to the East Asian species Y. yasudai Moriuti, 1964. The genetic distance between the mtCOI sequences in Y. occultatella sp. n. and Y. yasudai is 0,066–0,069 (6,6–6,9 %). However, the minimal genetic distance, 0,038–0,042 (3,8–4,2 %), was determined between the mtCOI sequences of the new species and Y. blandella (Christoph, 1882), while these species differ well in the forewing pattern.

scholarly journals A new species of Xylophis Beddome, 1878 (Serpentes: Pareidae) from the southern Western Ghats of India

2021 ◽  
Vol 71 ◽  
pp. 219-230
Author(s):  
Surya Narayanan ◽  
Pratyush P. Mohapatra ◽  
Amirtha Balan ◽  
Sandeep Das ◽  
David J. Gower
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Genetic Distance ◽  
Dna Sequences ◽  
Western Ghats ◽  
White Collar ◽  
The Body ◽  
Western Ghats Of India ◽  
Southern Western Ghats ◽  
A New Species

We reassess the taxonomy of the Indian endemic snake Xylophis captaini and describe a new species of Xylophis based on a type series of three specimens from the southernmost part of mainland India. Xylophis deepakisp. nov. is most similar phenotypically to X. captaini, with which it was previously confused. The new species differs from X. captaini by having a broader, more regular and ventrally extensive off-white collar, more ventral scales (117–125 versus 102–113), and by lack of flounces on the body and proximal lobes of the hemipenis. Phylogenetic analysis of mitochondrial 16S DNA sequences strongly indicates that the new species is most closely related to X. captaini, differing from it by an uncorrected pairwise genetic distance of 4.2%. A revised key to the species of Xylophis is provided.

Taxonomic changes and description of two new species for the Phyllodactylus lanei complex (Gekkota: Phyllodactylidae) in Mexico

Zootaxa ◽  
2018 ◽  
Vol 4407 (2) ◽  
pp. 151 ◽  
Author(s):  
TONATIUH RAMÍREZ-REYES ◽  
OSCAR FLORES-VILLELA
Keyword(s):  
New Species ◽  
Molecular Phylogeny ◽  
Genetic Distance ◽  
Morphological Characters ◽  
Integrative Taxonomy ◽  
Cryptic Diversity ◽  
Ecological Data ◽  
Temperature And Precipitation ◽  
Two New Species ◽  
Taxonomic Changes

An integrative taxonomy approach was implemented based on analysis of genetic, phylogenetic, morphological and ecological data to identify the cryptic diversity within the Phyllodactylus lanei complex. At least six species can be identified, of which four are currently considered subspecies: Phyllodactylus lanei, Phyllodactylus rupinus, Phyllodactylus isabelae, Phyllodactylus lupitae and two corresponding to undescribed taxa, which are identified and described in this contribution. These differ from other Mexican geckos in several characters: genetic distance (DNAmt), position in molecular phylogeny (concatened data DNAmt+DNAnu), species tree, morphological characters such as snout-vent length, longitudinal scales, tubercles from head to tail, interorbital scales, scales across venter, third labial–snout scales and rows of tubercles across dorsum; there are also differences in their bioclimatic profiles (temperature and precipitation) and geographical distribution. The most recent studies on taxonomy and evolution of Mexican geckos (Phyllodactylus) show that the diversity of this group of reptiles is currently underestimated, suggesting that more research and conservation efforts are should be addressed at these lizards. 

A new species of the genus Rhynchocalamus Günther, 1864 (Reptilia: Squamata: Colubridae) from Ilam province in western Iran

Zootaxa ◽  
2017 ◽  
Vol 4282 (3) ◽  
pp. 473 ◽  
Author(s):  
BEHZAD FATHINIA ◽  
ESKANDAR RASTEGAR-POUYANI ◽  
NASRULLAH RASTEGAR-POUYANI ◽  
HAMID DARVISHNIA
Keyword(s):  
New Species ◽  
Genetic Distance ◽  
Head And Neck ◽  
Cytb Gene ◽  
Color Patterns ◽  
Molecular Analyses ◽  
Western Iran ◽  
A New Species

A new colubrid snake, Rhynchocalamus ilamensis sp. nov., is described from Ilam province, western Iran. The new species differs from other described congeners using both morphological and molecular analyses. Morphologically, the head and neck color patterns are the most obvious distinguishing traits of this species from its congeners. The new species is separated from other species of Rhynchocalamus by a genetic distance of 9–13% in the mitochondrial Cytb gene, with R. satunini and R. melanocephalus as the closest and farthest relatives, respectively. As well, a color-based revised key to the genus is provided. 

A new species of black fly (Diptera: Simuliidae) in the Simulium (Simulium) multistriatum species-group from Thailand

Zootaxa ◽  
2019 ◽  
Vol 4586 (3) ◽  
pp. 461 ◽  
Author(s):  
JIRAPORN THAIJARERN ◽  
KOMGRIT WONGPAKAM ◽  
ANONGRIT KANGRANG ◽  
PAIROT PRAMUAL
Keyword(s):  
New Species ◽  
Genetic Distance ◽  
Dna Sequences ◽  
Phylogenetic Analyses ◽  
Strong Support ◽  
Pupal Stage ◽  
Species Group ◽  
Mountainous Area ◽  
Black Fly ◽  
Interspecific Genetic Distance

A new black fly species of the Simulium multistriatum species-group of the subgenus Simulium Latreille is described from the mountainous area in northeastern Thailand, based on morphology and mitochondrial DNA sequences. The new species is morphologically similar to S. laui Takaoka and Sofian-Azirun and S. lacduongense Takaoka and Ya’cob originally described from Vietnam, S. fenestratum Edwards originally described from Indonesia and S. chaliowae Takaoka and Boonkemtong originally described from Thailand, but can be distinguished in the adult stage by the number of upper eye facets and globular shape of the spermatheca and in the pupal stage by the cocoon and shape of thoracic tubercles. Genetic distance and phylogenetic analyses of mitochondrial cytochrome c oxidase I sequences differentiated the new species from other members of S. multistriatum species-group. All specimens of the new species formed a monophyletic clade with strong support in all phylogenetic analyses. The minimum interspecific genetic distance of 4.9% is considerably greater than the new species maximum intraspecific genetic distance (2.7%). 

scholarly journals A new treefrog from Cordillera del Cóndor with comments on the biogeographic affinity between Cordillera del Cóndor and the Guianan Tepuis (Anura, Hylidae, Hyloscirtus)

ZooKeys ◽  
2018 ◽  
Vol 809 ◽  
pp. 97-124 ◽  
Author(s):  
Santiago R. Ron ◽  
Marcel A. Caminer ◽  
Andrea Varela-Jaramillo ◽  
Diego Almeida-Reinoso
Keyword(s):  
New Species ◽  
Genetic Distance ◽  
Close Relationships ◽  
Genetic Evidence ◽  
Undescribed Species ◽  
Southern Andes ◽  
Bright Orange ◽  
Mountain Chain ◽  
A New Species

TheHyloscirtuslarinopygiongroup is a clade of 16 species of large hylids that inhabit cascading Andean streams. They have brown coloration that, in most species, contrasts with bright marks. Herein morphological and genetic evidence is used to describe a new species of the group from Cordillera del Cóndor, a sub-Andean mountain chain that has phytogeographic affinities with the Guianan Tepuis. The new species is characterized by dark-brown coloration with contrasting bright orange flecks and by the presence of an enlarged and curved prepollex protruding as a spine. The new species is closely related toH.tapichalacaand an undescribed species from the southern Andes of Ecuador. The genetic distance betweenH.hillisisp. n.and its closest relative,H.tapichalaca, is 2.9% (gene 16S mtDNA). Our phylogeny and a review of recently published phylogenies show that amphibians from Cordillera del Cóndor have close relationships with either Andean or Amazonian species. Amphibians do not show the Condor-Guianan Tepuis biogeographic link that has been documented in plants.

Confirmation of a New Species of Small Dasyurid Marsupial by Electrophoretic Analysis of Enzymes and Proteins

1983 ◽  
Vol 31 (5) ◽  
pp. 743 ◽  
Author(s):  
DW Cooper ◽  
A Woolley
Keyword(s):  
New Species ◽  
Genetic Distance ◽  
Electrophoretic Mobility ◽  
Late Miocene ◽  
Electrophoretic Analysis ◽  
Early Pliocene ◽  
Antechinus Stuartii ◽  
A New Species ◽  
Nei's Genetic Distance

Eight species of dasyurid marsupials have been typed for the electrophoretic mobility of 18 of their enzymes and proteins. The species were the Ningbing antechinus (Pseudantechinus sp.), Pseudantechinus macdonnellensis (formerly Antechinus macdonnellensis), Parantechinus apicalis (formerly Antechinus apicalis), Parantechinus bilarni (formerly Antechinus bilarni), Antechinus stuartii, Dasykaluta rosamondae (formerly Antechinus rosamondae), Dasycercus cristicauda and Planigale maculata. The results show that the Ningbing antechinus is a probable new species. The data suggest that its nearest relative is Dasycercus cristicauda. Analysis of the results by calculation of a modified x2 and an approximation to Nei's genetic distance indicates that all species have been the product of one radiation, possibly in the late Miocene or early Pliocene. Two races of P. macdonnellensis probably exist, separable by their transferrin types.

scholarly journals Two new species of the hillstream loach genus Indoreonectes from the northern Western Ghats of India (Teleostei: Nemacheilidae)

2021 ◽  
Vol 71 ◽  
pp. 517-533
Author(s):  
Pradeep Kumkar ◽  
Manoj Pise ◽  
Pankaj A. Gorule ◽  
Chandani R. Verma ◽  
Lukáš Kalous
Keyword(s):  
New Species ◽  
Genetic Distance ◽  
Western Ghats ◽  
River System ◽  
The Body ◽  
Posterior Border ◽  
Lower Lip ◽  
Dorsal Fin ◽  
Western Ghats Of India ◽  
Two New Species

The hill stream loach genus Indoreonectes is endemic to peninsular India south of the Satpura hill ranges and is represented by three species I. evezardi, I. keralensis and I. telanganaensis. Indoreonectes evezardi has been suggested as a species complex based on recent genetic studies; however, due to lack of type material the species delimitation has been difficult. Here we redescribe I. evezardi collected from its type locality and describe two new species from the northern Western Ghats of India. Indoreonectes neeleshi, described from Mula River tributary of Godavari river system, can be diagnosed from all its congeners based on a combination of characters: inner rostral barbel reaching middle of nostril; maxillary barbel reaching midway between eye and posterior border of operculum; dorsal hump behind nape; bars on lateral side of the body wider than inter-bar space; total vertebrae 35 and dorsal fin insertion between 13th and 14th abdominal vertebrae. Indoreonectes rajeevi, described from Hiranyakeshi River of the Krishna river system, differs from all its congeners based on a combination of characters: inner rostral barbel reaching anterior margin of eye; maxillary barbel reaching posterior border of operculum; conspicuous black markings on lower lip, dorsal hump absent; total vertebrae 36 and dorsal fin insertion between 12th and 13th abdominal vertebrae. Further, I. neeleshi differs from its congeners by the raw genetic distance of 6.8–14.4% for the cox1 gene and 5.7–16.2% for the cytb gene, while I. rajeevi differs from its congeners by the raw genetic distance of 10.9–14.0% for the cox1 gene and 11.8–15.8% for the cytb gene.

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