scholarly journals Development of a molecular marker based on chloroplast gene for specific identification of Korean Hibiscus (Hibiscus syriacus ‘Simbaek’)

2021 ◽  
Vol 64 (1) ◽  
Author(s):  
Rongbo Wang ◽  
Sang Yong Park ◽  
Sul Woong Park ◽  
Aditi Mitra Puja ◽  
Yeon-Ju Kim
Keyword(s):  
Molecular Markers ◽  
Chloroplast Gene ◽  
Herbal Products ◽  
Specific Identification ◽  
F Region ◽  
Allele Specific ◽  
Polymerase Chain ◽  
Potential Tool ◽  
Hibiscus Syriacus ◽  
Selection Of

AbstractDue to the rise in substitution and adulteration of herbal products, as well as the lack of genetic information on Hibiscus plants, more molecular markers are needed to understand the genetic diversity and avoid their misidentification. There are many allelic variants of the functional genes in Hibiscus and other plants, which control their respective phenotypes and other characteristics. Identifying alleles of the desired trait by determining diversification through gene-typing allele-specific markers for authentication is, therefore, a potent strategy. The purpose of this study was to use insertion/deletion (InDel) markers to identify Hibiscus syriacus cultivars. We developed a novel InDel marker for Korean Hibiscus ‘Simbaek’, based on the trnL-F region of the chloroplast gene. Through this InDel site, a modified specific primer pair and a novel multiplex polymerase chain reaction (PCR) system were developed for specific identification of the Korean Hibiscus Simbaek cultivar. The molecular markers developed in this study were highly specific and accurately authenticated as Simbaek from the five main cultivars of H. syriacus. Taken together, the described method is a potential tool for the identification and selection of germplasm resource of Simbaek cultivar. Graphical Abstract

Collection, characterization, and utilization of germ plasm of Lentinula edodes

1995 ◽  
Vol 73 (S1) ◽  
pp. 955-961 ◽  
Author(s):  
S. T. Chang ◽  
H. S. Kwan ◽  
Y. N. Kang
Keyword(s):  
Molecular Markers ◽  
Mycelial Growth ◽  
Germ Plasm ◽  
Lentinula Edodes ◽  
Molecular Genetic ◽  
Genetic Maps ◽  
Mating Types ◽  
Genomic Fingerprinting ◽  
Polymerase Chain ◽  
Selection Of

Wild and cultivated strains of Lentinula edodes have been collected to form a germ-plasm bank of the mushroom. In addition to the ecological, morphological, and physical properties, the strains were characterized to determine their mating types (alleles of A and B incompatibility factors), substrate degradation abilities, mycelial growth rates, and fruiting abilities. The strains were used to establish molecular genetic methods of strain authentification. The genomic fingerprinting method of arbitrarily primed polymerase chain reaction was found to be a better method than the rDNA internal transcribed spacer regions sequence comparison for L. edodes strain typing. The utilization of the characterized germ-plasm bank for the selection of desirable germ plasm for breeding and cultivation is described. The value and use of molecular markers and genetic maps is also discussed. Key words: mating types, mycelial growth rate, molecular markers.

scholarly journals Molecular selection of Beta vulgaris L. breeding materials with genes of resistance to abiotic stresses

2019 ◽  
Vol 1 (1) ◽  
pp. 16-20
Author(s):  
A. A. Nalbandyan ◽  
T. P. Fedulova ◽  
A. S. Hussein
Keyword(s):  
Sugar Beet ◽  
Molecular Genetic ◽  
Polymerase Chain Reaction Method ◽  
Root Knot Nematode ◽  
Chain Reaction ◽  
Specific Primers ◽  
Allele Specific ◽  
Molecular Selection ◽  
Polymerase Chain ◽  
Selection Of

In the work, the results of sugar beet breeding materials' molecular-genetic studying for presence of genes of resistance to root-knot nematode, rhizomania and powdery mildew are presented. Testing of plants was conducted using polymerase chain reaction method. The genes R6m-1, Rz1 and Rz2, Pm were identified with the help of 5 one-chain RAPD and 4 allele-specific primers. Aim of the studies is to screen sugar beet varieties for presence of the abovementioned genes of resistance. Domestic and foreign sugar beet hybrids were an object of the studies.

scholarly journals Evidence for wheat, rye, and barley presence in gluten free foods by PCR method – comparison with ELISA method

2011 ◽  
Vol 29 (No. 1) ◽  
pp. 45-50 ◽  
Author(s):  
E. Mašková ◽  
I. Paulíčková ◽  
J. Rysová ◽  
D. Gabrovská
Keyword(s):  
Polymerase Chain Reaction ◽  
Solid Phase ◽  
Phase Extraction ◽  
Gluten Free ◽  
Chloroplast Gene ◽  
Elisa Method ◽  
Chain Reaction ◽  
Pcr Method ◽  
Polymerase Chain ◽  
Selection Of

A method of the evidence for the presence of wheat, rye, and barley in gluten free foods, based on the polymerase chain reaction (PCR), was validated. DNA was isolated from foods by chaotropic solid phase extraction. The PCR method applied was focused on the intron of the chloroplast gene trnL and utilised primers WBR11 and WBR13. Electrophoresed wheat and rye DNAs were characterised by a 201 bp fragment, barley DNA by a 196 bp fragment. The validated PCR method was applied to the selection of 18 gluten free foods, previously found by ELISA method to contain 1 mg or more of gliadin per 100 g food. The presence of wheat was confirmed by PCR method in all foods analysed. The comparison with the results obtained by ELISA method reliably verified the detection limit of PCR method, i.e., 0.02% wheat.

scholarly journals Molecular confirmation of Xiphinema italiae Meyl, 1953 (Nematoda: Longidoridae) from the Slovak Republic

2009 ◽  
Vol 46 (2) ◽  
pp. 131-134 ◽  
Author(s):  
S. Kumari ◽  
M. Lišková
Keyword(s):  
Polymerase Chain Reaction ◽  
Molecular Markers ◽  
Cytochrome C Oxidase ◽  
Internal Transcribed Spacer ◽  
Slovak Republic ◽  
Chain Reaction ◽  
Polymerase Chain Reaction Protocol ◽  
Specific Identification ◽  
Polymerase Chain ◽  
Second Internal Transcribed Spacer

AbstractIdentification of the nematode Xiphinema italiae relies mainly on time-consuming morphological and morphometrical studies. A polymerase chain reaction protocol has been used for the reliable and specific identification of X. italiae. Moreover, four independently evolving molecular markers (cox1- cytochrome c oxidase subunit 1; ITS2-second internal transcribed spacer; 18S gene and D2/D3 expansion segments of 28S gene) were amplified and sequenced in both directions.

Localization of the Br Polymorphism on a 144 bp Exon of the GPIa Gene and Its Application in Platelet DNA Typing

1994 ◽  
Vol 71 (05) ◽  
pp. 651-654 ◽  
Author(s):  
Rainer Kalb ◽  
Sentot Santoso ◽  
Katja Unkelbach ◽  
Volker Kiefel ◽  
Christian Mueller-Eckhardt
Keyword(s):  
Genomic Organization ◽  
Fragment Length Polymorphism ◽  
Human Platelet ◽  
Dna Typing ◽  
Rflp Analysis ◽  
Serological Typing ◽  
Allele Specific ◽  
Polymerase Chain ◽  
Alloimmune Thrombocytopenia ◽  
Rflp Typing

SummaryAlloimmunization against the human platelet alloantigen system Br (HPA-5) is the second most common cause of neonatal alloimmune thrombocytopenia (NAIT) in Caucasian populations. We have recently shown that a single base polymorphism at position 1648 on platelet mRNA coding for GPIa results in an aminoacid substitution at position 505 on the mature GPIa which is associated with the two serological defined Br phenotypes.Since DNA-typing of platelet alloantigens offers possibilities for useful clinical applications, we designed genomic DNA-based restriction fragment length polymorphism (RFLP) typing for Br alloantigens. To establish this technique we analyzed the genomic organization of GPIa adjacent to the polymorphic base. Using the polymerase chain reaction (PCR) of blood cell DNA we have identified two introns (approximately 1.7 and 1.9 kb) flanking a 144 bp coding sequence of the GPIa gene encompassing the polymorphic base 1648. Based on the in- tron sequence, a PCR primer was constructed to amplify a 274 bp fragment which was used for allele-specific RFLP to determine the Br genotypes. The results of RFLP analysis using Mnll endonuclease obtained from 15 donors (2 Br37*, 2 Br^ and 11 Brb/b) correlate perfectly with serological typing by monoclonal antibody-specific immobilization of platelet antigens (MAIPA) assay.

scholarly journals Knowledge and Patterns of Dietary Supplement Use among Students Attending King Abdulaziz University in Saudi Arabia: A Cross-Sectional Study

2021 ◽  
Vol 58 ◽  
pp. 004695802110208
Author(s):  
Abdulraof Alqrache ◽  
Mostafa Mostafa ◽  
Omar Ghabrah ◽  
Ziyad Ghabrah ◽  
Nezar Kamal ◽  
...  
Keyword(s):  
Dietary Supplements ◽  
Cross Sectional Study ◽  
Sectional Study ◽  
Cross Sectional ◽  
Herbal Products ◽  
Supplement Use ◽  
King Abdulaziz University ◽  
Dietary Supplement Use ◽  
Harmful Effects ◽  
Selection Of

Oral dietary supplements (DSs) include vitamins, minerals, amino acids, energy drinks, and herbal products. The use of DSs is increasing and their manufacturers promote their benefits. Studies have validated some of these benefits, but have also indicated that some DSs can have adverse effects, especially if used without the appropriate supervision. Little information on DS use among Saudis is available. This study assessed the use of dietary supplements among male and female university students with the goal of educating the community about DSs and the dangers associated with their misuse. Online and paper validated questionnaires were administered to King Abdulaziz University (KAU) students between September 2019 and January 2020. The responses were collected and analyzed statistically. Of the 954 KAU students who completed the survey, one-third used DSs (42.9% women vs 25.7% men). Of these, 51.7% believed that DSs are essential for health, 41.7% classified them as both food and drugs, 67.2% were aware that DSs could not replace a healthy diet, and 25.8% were aware of their potentially harmful effects. Multivitamins and minerals were the most used DSs. DS awareness among KAU students is limited. Additional health education is necessary to assist students in their selection of the most suitable DSs.

scholarly journals Hospital-Based Donor Recruitment and Predonation Serologic Testing for COVID-19 Convalescent Plasma

2021 ◽  
Author(s):  
Joanna Balcerek ◽  
Evelin Trejo ◽  
Kendall Levine ◽  
Paul Couey ◽  
Zoe V Kornberg ◽  
...  
Keyword(s):  
Blood Donation ◽  
High Titer ◽  
Igg Antibodies ◽  
Serologic Testing ◽  
Wide Range ◽  
The Us ◽  
Polymerase Chain ◽  
Igg Level ◽  
Donor Recruitment ◽  
Selection Of

Abstract Objectives Serologic testing for antibodies to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in potential donors of coronavirus disease 2019 (COVID-19) convalescent plasma (CCP) may not be performed until after blood donation. A hospital-based recruitment program for CCP may be an efficient way to identify potential donors prospectively Methods Patients who recovered from known or suspected COVID-19 were identified and recruited through medical record searches and public appeals in March and April 2020. Participants were screened with a modified donor history questionnaire and, if eligible, were asked for consent and tested for SARS-CoV-2 antibodies (IgG and IgM). Participants positive for SARS-CoV-2 IgG were referred for CCP collection. Results Of 179 patients screened, 128 completed serologic testing and 89 were referred for CCP donation. IgG antibodies to SARS-CoV-2 were detected in 23 of 51 participants with suspected COVID-19 and 66 of 77 participants with self-reported COVID-19 confirmed by polymerase chain reaction (PCR). The anti–SARS-CoV-2 IgG level met the US Food and Drug Administration criteria for “high-titer” CCP in 39% of participants confirmed by PCR, as measured by the Ortho VITROS IgG assay. A wide range of SARS-CoV-2 IgG levels were observed. Conclusions A hospital-based CCP donor recruitment program can prospectively identify potential CCP donors. Variability in SARS-CoV-2 IgG levels has implications for the selection of CCP units for transfusion.

scholarly journals Two User-Friendly Molecular Markers Developed for the Identification of Hybrid Lethality Genes in Brassica oleracea

Agronomy ◽  
2021 ◽  
Vol 11 (5) ◽  
pp. 982
Author(s):  
Zhiliang Xiao ◽  
Congcong Kong ◽  
Fengqing Han ◽  
Limei Yang ◽  
Mu Zhuang ◽  
...  
Keyword(s):  
Molecular Markers ◽  
Brassica Oleracea ◽  
Rapid Identification ◽  
Inbred Lines ◽  
Hybrid Lethality ◽  
Specific Pcr ◽  
Allele Specific ◽  
User Friendly ◽  
Allele Specific Pcr ◽  
Kasp Marker

Cabbage (Brassica oleracea) is an important vegetable crop that is cultivated worldwide. Previously, we reported the identification of two dominant complementary hybrid lethality (HL) genes in cabbage that could result in the death of hybrids. To avoid such losses in the breeding process, we attempted to develop molecular markers to identify HL lines. Among 54 previous mapping markers closely linked to BoHL1 or BoHL2, only six markers for BoHL2 were available in eight cabbage lines (two BoHL1 lines; three BoHL2 lines; three lines without BoHL); however, they were neither universal nor user-friendly in more inbred lines. To develop more accurate markers, these cabbage lines were resequenced at an ~20× depth to obtain more nucleotide variations in the mapping regions. Then, an InDel in BoHL1 and a single-nucleotide polymorphism (SNP) in BoHL2 were identified, and the corresponding InDel marker MBoHL1 and the competitive allele-specific PCR (KASP) marker KBoHL2 were developed and showed 100% accuracy in eight inbred lines. Moreover, we identified 138 cabbage lines using the two markers, among which one inbred line carried BoHL1 and 11 inbred lines carried BoHL2. All of the lethal line genotypes obtained with the two markers matched the phenotype. Two markers were highly reliable for the rapid identification of HL genes in cabbage.

scholarly journals A Comparative Study of 5S rDNA Non-Transcribed Spacers in Elaeagnaceae Species

Plants ◽  
2020 ◽  
Vol 10 (1) ◽  
pp. 4
Author(s):  
Oleg S. Alexandrov ◽  
Olga V. Razumova ◽  
Gennady I. Karlov
Keyword(s):  
Polymerase Chain Reaction ◽  
Molecular Markers ◽  
Dna Markers ◽  
5S Rdna ◽  
Chain Reaction ◽  
Closely Related Species ◽  
Pcr Products ◽  
Polymerase Chain ◽  
Species Specific ◽  
Shepherdia Canadensis

5S rDNA is organized as a cluster of tandemly repeated monomers that consist of the conservative 120 bp coding part and non-transcribed spacers (NTSs) with different lengths and sequences among different species. The polymorphism in the 5S rDNA NTSs of closely related species is interesting for phylogenetic and evolutional investigations, as well as for the development of molecular markers. In this study, the 5S rDNA NTSs were amplified with universal 5S1/5S2 primers in some species of the Elaeagnaceae Adans. family. The polymerase chain reaction (PCR) products of five Elaeagnus species had similar lengths near 310 bp and were different from Shepherdia canadensis (L.) Nutt. and Sh. argentea (Pusch.) Nutt. samples (260 bp and 215 bp, respectively). The PCR products were cloned and sequenced. An analysis of the sequences revealed that intraspecific levels of NTS identity are high (approximately 95–96%) and similar in the Elaeagnus L. species. In Sh. argentea, this level was slightly lower due to the differences in the poly-T region. Moreover, the intergeneric and intervarietal NTS identity levels were studied and compared. Significant differences between species (except E. multiflora Thunb. and E. umbellata Thunb.) and genera were found. Herein, a range of the NTS features is discussed. This study is another step in the investigation of the molecular evolution of Elaeagnaceae and may be useful for the development of species-specific DNA markers in this family.

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