scholarly journals Response and oil degradation activities of a northeast Atlantic bacterial community to biogenic and synthetic surfactants

Microbiome ◽  
2021 ◽  
Vol 9 (1) ◽  
Author(s):  
Christina N. Nikolova ◽  
Umer Zeeshan Ijaz ◽  
Clayton Magill ◽  
Sara Kleindienst ◽  
Samantha B. Joye ◽  
...  
Keyword(s):  
Microbial Community ◽  
Crude Oil ◽  
Functional Diversity ◽  
Community Dynamics ◽  
Negative Impact ◽  
Community Diversity ◽  
Oil Degradation ◽  
Northeast Atlantic ◽  
Oil Biodegradation ◽  
Degrading Bacteria

Abstract Background Biosurfactants are naturally derived products that play a similar role to synthetic dispersants in oil spill response but are easily biodegradable and less toxic. Using a combination of analytical chemistry, 16S rRNA amplicon sequencing and simulation-based approaches, this study investigated the microbial community dynamics, ecological drivers, functional diversity and robustness, and oil biodegradation potential of a northeast Atlantic marine microbial community to crude oil when exposed to rhamnolipid or synthetic dispersant Finasol OSR52. Results Psychrophilic Colwellia and Oleispira dominated the community in both the rhamnolipid and Finasol OSR52 treatments initially but later community structure across treatments diverged significantly: Rhodobacteraceae and Vibrio dominated the Finasol-amended treatment, whereas Colwellia, Oleispira, and later Cycloclasticus and Alcanivorax, dominated the rhamnolipid-amended treatment. Key aromatic hydrocarbon-degrading bacteria, like Cycloclasticus, was not observed in the Finasol treatment but it was abundant in the oil-only and rhamnolipid-amended treatments. Overall, Finasol had a significant negative impact on the community diversity, weakened the taxa-functional robustness of the community, and caused a stronger environmental filtering, more so than oil-only and rhamnolipid-amended oil treatments. Rhamnolipid-amended and oil-only treatments had the highest functional diversity, however, the overall oil biodegradation was greater in the Finasol treatment, but aromatic biodegradation was highest in the rhamnolipid treatment. Conclusion Overall, the natural marine microbial community in the northeast Atlantic responded differently to crude oil dispersed with either synthetic or biogenic surfactants over time, but oil degradation was more enhanced by the synthetic dispersant. Collectively, our results advance the understanding of how rhamnolipid biosurfactants and synthetic dispersant Finasol affect the natural marine microbial community in the FSC, supporting their potential application in oil spills.

scholarly journals Response and Oil Degradation Activities of a Northeast Atlantic Bacterial Community to Biogenic and Synthetic Surfactants

2021 ◽  
Author(s):  
Christina Nikolova ◽  
Umer Zeeshan Ijaz ◽  
Clayton Magill ◽  
Sara Kleindienst ◽  
Samantha B. Joye ◽  
...  
Keyword(s):  
Microbial Community ◽  
Crude Oil ◽  
Functional Diversity ◽  
Community Dynamics ◽  
Negative Impact ◽  
Community Diversity ◽  
Oil Degradation ◽  
Northeast Atlantic ◽  
Oil Biodegradation ◽  
Degrading Bacteria

Abstract Background: Biosurfactants, however, are naturally derived products that play a similar role to synthetic dispersants in oil spill response but are easily biodegradable and less toxic. Using a combination of analytical chemistry, 16S rRNA amplicon sequencing and simulation-based approaches, this study investigated the microbial community dynamics, ecological drivers, functional diversity and robustness, and oil biodegradation potential of a northeast Atlantic marine microbial community to crude oil when exposed to rhamnolipid or synthetic dispersant Finasol OSR52. Results: Psychrophilic Colwellia and Oleispira dominated the community in both the rhamnolipid and Finasol OSR52 treatments initially but later community structure across treatments diverged significantly: Rhodobacteraceae and Vibrio dominated the Finasol-amended treatment, whereas Colwellia, Oleispira, and later Cycloclasticus and Alcanivorax, dominated the rhamnolipid-amended treatment. The key aromatic hydrocarbon-degrading bacteria like Cycloclasticus was not observed in the Finasol treatment but it was abundant in the oil-only and rhamnolipid-amended treatments. Overall, Finasol had a significant negative impact on the community diversity, weakened the taxa-functional robustness of the community, and caused a stronger environmental filtering, more so than oil-only and rhamnolipid-amended oil treatments. Rhamnolipid-amended and oil-only treatments had the highest functional diversity, however, the overall oil biodegradation was greater in the Finasol treatment, but aromatic biodegradation was highest in the rhamnolipid treatment. Conclusion: Overall, the natural marine microbial community in the northeast Atlantic responded differently to crude oil dispersed with either synthetic or biogenic surfactants over time, but oil degradation was more enhanced by the synthetic dispersant. Collectively, our results advance the understanding of how rhamnolipid biosurfactants and synthetic dispersant Finasol affect the natural marine microbial community in the FSC, supporting their potential application in oil spills.

scholarly journals Response and oil degradation activities of a northeast Atlantic bacterial community to biogenic and synthetic surfactants

2020 ◽  
Author(s):  
Christina Nikolova ◽  
Umer Zeeshan Ijaz ◽  
Clayton Magill ◽  
Sara Kleindienst ◽  
Samantha B. Joye ◽  
...  
Keyword(s):  
Microbial Community ◽  
Crude Oil ◽  
Functional Diversity ◽  
Community Dynamics ◽  
Negative Impact ◽  
Microbial Community Composition ◽  
Oil Degradation ◽  
Northeast Atlantic ◽  
Oil Biodegradation ◽  
Degrading Bacteria

AbstractBackgroundAlthough synthetic dispersants are effective in dispersing crude oil, they can alter the natural microbial response to oil and potentially hinder its biodegradation. Biosurfactants, however, are naturally derived products that play a similar role to synthetic dispersants in oil spill response but are easily biodegradable and less toxic. This study investigated the microbial community dynamics, ecological drivers, functional diversity, and oil biodegradation potential of a northeast Atlantic marine microbial community to crude oil when exposed to rhamnolipid or synthetic dispersant Finasol OSR52.ResultsWe found the microbial community composition and diversity were markedly different in the rhamnolipid-amended treatment compared to that with Finasol, with key aromatic hydrocarbon-degrading bacteria like Cycloclasticus being suppressed in the Finasol treatment but not in oil-only and rhamnolipid-amended treatments. Psychrophilic Colwellia and Oleispira dominated the community in both the rhamnolipid and Finasol OSR52 treatments initially but later community structure across treatments diverged significantly: Rhodobacteraceae and Vibrio dominated the Finasol-amended treatment and Colwellia, Oleispira, and later Cycloclasticus and Alcanivorax, dominated the rhamnolipid-amended treatment. Vibrio abundance increased substantially in treatments receiving Finasol, suggesting a potentially important role for these organisms in degrading dispersant components. In fact, Finasol was linked with a negative impact on alpha diversity. Deterministic environmental filtering played a dominant role in regulating the community assembly in all treatments but was strongest in the dispersant-amended treatments. Rhamnolipid-amended and oil-only treatments had the highest functional diversity, however, the overall oil biodegradation was greater in the Finasol treatment, but aromatic biodegradation was highest in the rhamnolipid treatment.ConclusionOverall, the natural marine microbial community in the northeast Atlantic responded differently to crude oil dispersed with either synthetic or biogenic surfactants over time, but oil degradation was more enhanced by the synthetic dispersant. Collectively, our results advance the understanding of how rhamnolipid biosurfactants affect the natural marine microbial community, supporting their potential application in oil spills.

scholarly journals Effects of Dispersants and Biosurfactants on Crude-Oil Biodegradation and Bacterial Community Succession

2021 ◽  
Vol 9 (6) ◽  
pp. 1200
Author(s):  
Gareth E. Thomas ◽  
Jan L. Brant ◽  
Pablo Campo ◽  
Dave R. Clark ◽  
Frederic Coulon ◽  
...  
Keyword(s):  
Crude Oil ◽  
Early Stage ◽  
Niche Partitioning ◽  
Hydrocarbon Biodegradation ◽  
Hydrocarbonoclastic Bacteria ◽  
Bacterial Response ◽  
Oil Biodegradation ◽  
Interfacial Surface ◽  
Degrading Bacteria ◽  
Oil Spill Response

This study evaluated the effects of three commercial dispersants (Finasol OSR 52, Slickgone NS, Superdispersant 25) and three biosurfactants (rhamnolipid, trehalolipid, sophorolipid) in crude-oil seawater microcosms. We analysed the crucial early bacterial response (1 and 3 days). In contrast, most analyses miss this key period and instead focus on later time points after oil and dispersant addition. By focusing on the early stage, we show that dispersants and biosurfactants, which reduce the interfacial surface tension of oil and water, significantly increase the abundance of hydrocarbon-degrading bacteria, and the rate of hydrocarbon biodegradation, within 24 h. A succession of obligate hydrocarbonoclastic bacteria (OHCB), driven by metabolite niche partitioning, is demonstrated. Importantly, this succession has revealed how the OHCB Oleispira, hitherto considered to be a psychrophile, can dominate in the early stages of oil-spill response (1 and 3 days), outcompeting all other OHCB, at the relatively high temperature of 16 °C. Additionally, we demonstrate how some dispersants or biosurfactants can select for specific bacterial genera, especially the biosurfactant rhamnolipid, which appears to provide an advantageous compatibility with Pseudomonas, a genus in which some species synthesize rhamnolipid in the presence of hydrocarbons.

Methanogenic crude oil degradation induced by an exogenous microbial community and nutrient injections

2021 ◽  
Vol 201 ◽  
pp. 108458
Author(s):  
Konomi Suda ◽  
Masayuki Ikarashi ◽  
Hideyuki Tamaki ◽  
Satoshi Tamazawa ◽  
Susumu Sakata ◽  
...  
Keyword(s):  
Microbial Community ◽  
Crude Oil ◽  
Oil Degradation ◽  
Crude Oil Degradation

scholarly journals Evaluating the aerobic xylene-degrading potential of the intrinsic microbial community of a legacy BTEX-contaminated aquifer by enrichment culturing coupled with multi-omics analysis: uncovering the role of Hydrogenophaga strains in xylene degradation

2022 ◽  
Author(s):  
Sinchan Banerjee ◽  
Anna Bedics ◽  
Péter Harkai ◽  
Balázs Kriszt ◽  
Nagaraju Alpula ◽  
...  
Keyword(s):  
Microbial Community ◽  
Primary Objective ◽  
Community Diversity ◽  
Contaminated Site ◽  
Whole Genome Analysis ◽  
Contaminated Aquifer ◽  
Degrading Bacteria ◽  
Research Outcome ◽  
Xylene Isomers ◽  
Set Up

AbstractTo develop effective bioremediation strategies, it is always important to explore autochthonous microbial community diversity using substrate-specific enrichment. The primary objective of this present study was to reveal the diversity of aerobic xylene-degrading bacteria at a legacy BTEX-contaminated site where xylene is the predominant contaminant, as well as to identify potential indigenous strains that could effectively degrade xylenes, in order to better understand the underlying facts about xylene degradation using a multi-omics approach. Henceforward, parallel aerobic microcosms were set up using different xylene isomers as the sole carbon source to investigate evolved bacterial communities using both culture-dependent and independent methods. Research outcome showed that the autochthonous community of this legacy BTEX-contaminated site has the capability to remove all of the xylene isomers from the environment aerobically employing different bacterial groups for different xylene isomers. Interestingly, polyphasic analysis of the enrichments disclose that the community composition of the o-xylene-degrading enrichment community was utterly distinct from that of the m- and p-xylene-degrading enrichments. Although in each of the enrichments Pseudomonas and Acidovorax were the dominant genera, in the case of o-xylene-degrading enrichment Rhodococcus was the main player. Among the isolates, two Hydogenophaga strains, belonging to the same genomic species, were obtained from p-xylene-degrading enrichment, substantially able to degrade aromatic hydrocarbons including xylene isomers aerobically. Comparative whole-genome analysis of the strains revealed different genomic adaptations to aromatic hydrocarbon degradation, providing an explanation on their different xylene isomer-degrading abilities.

Effect of Dispersants on Oil Biodegradation Under Simulated Marine Conditions

1999 ◽  
Vol 1999 (1) ◽  
pp. 169-176 ◽  
Author(s):  
Richard P. J. Swannell ◽  
Fabien Daniel
Keyword(s):  
Crude Oil ◽  
Cluster Formation ◽  
Hydrocarbon Biodegradation ◽  
Dispersed Oil ◽  
Oil Biodegradation ◽  
Size Number ◽  
Degrading Bacteria ◽  
Aliphatic And Aromatic Hydrocarbons ◽  
Micro Organisms ◽  
Neutrally Buoyant

ABSTRACT A study was undertaken on the dispersion, microbial colonisation and biodegradation of chemically-dispersed weathered Forties crude oil under simulated marine conditions in laboratory microcosms. The measurements of droplet size, number and microbial colonisation were made using new techniques developed by the project team. Rapid growth of indigenous micro-organisms capable of degrading both crude oil and dispersants was observed in the presence of chemically-dispersed oil. These organisms colonised the dispersed oil and biodegraded the aliphatic and aromatic hydrocarbons. These processes was stimulated by the addition of inorganic nutrients. Some colonised droplets agglomerated into neutrally-buoyant “clusters” (100 µm- 2 mm diameter) consisting of oil, bacteria, protozoa, and nematodes. After substantial hydrocarbon biodegradation these clusters sank to the bottom of the microcosms. No biodegradation or cluster formation was noted in “killed” controls in which biological activity had been inhibited. Different dispersants promoted microbial growth to differing extents. These results suggest that the addition of dispersants can increase the rate of oil biodegradation under natural conditions by promoting the growth of indigenous hydrocarbon-degrading bacteria, as well as increasing the surface area of oil available for microbial colonisation.

scholarly journals Seasonal Dynamics and Persistency of Endophyte Communities in Kalidium schrenkianum Shifts Under Radiation Stress

2021 ◽  
Vol 12 ◽  
Author(s):  
Jing Zhu ◽  
Xiang Sun ◽  
Qi-Yong Tang ◽  
Zhi-Dong Zhang
Keyword(s):  
Microbial Community ◽  
Community Composition ◽  
Bacterial Communities ◽  
Community Dynamics ◽  
Microbial Community Composition ◽  
Northwest China ◽  
Community Diversity ◽  
Radiation Stress ◽  
Core Microbiome ◽  
Essential Components

Endophytes are essential components of plant microbiota. Studies have shown that environmental factors and seasonal alternation can change the microbial community composition of plants. However, most studies have mainly emphasized the transitive endophyte communities and seasonal alternation but paid less attention to their persistence through multiple seasons. Kalidium schrenkianum is a perennial halophyte growing in an arid habitat with radiation stress (137Cs) in northwest China. In this study, K. schrenkianum growing under different environmental stresses were selected to investigate the dynamics and persistency of endophytic microbial communities amid seasons in a year. The results showed that Gammaproteobacteria and unassigned Actinobacteria were the most dominant bacterial communities, while the most dominant fungal communities were Dothideomycetes, unassigned Fungi, and Sodariomycetes. The bacterial community diversity in roots was higher than that in aerial tissues, and root communities had higher diversity in summer and autumn. In contrast, the fungal community diversity was higher in aerial tissues comparing to roots, and the highest diversity was in spring. Season was a determinant factor in the microbial community composition in the roots but not in the aerial tissues. RaupCrick index suggested that the bacterial communities were mainly shaped by stochastic processes. Our research investigated the community traits and members with temporal persistency. For example, bacterial taxa Afipia, Delftia, Stenotrophomonas, Xanthomonadaceae_B_OTU_211, and fungal taxa Neocamarosporium F_OTU_388, F_OTU_404, F_OTU_445, and unassigned Fungi F_OTU_704, F_OTU_767 showed higher frequencies than predicted in all the four seasons tested with neutral community model. The networks of co-occurrence associations presented in two or more seasons were visualized which suggested potential time-continuous core modules in most communities. In addition, the community dynamics and persistency also showed different patterns by radiation levels. Our findings would enhance our understanding of the microbial community assembly under environmental stress, and be promising to improve the development of integrated concept of core microbiome in future.

Assessment of Crude Oil Degradation by Mixed Culture of Bacillus subtilis and Pseudomonas aeruginosa at Different Concentrations

2020 ◽  
Vol 9 (2) ◽  
pp. 33-50
Author(s):  
A.A. Faggo ◽  
A.H. Kawo ◽  
B.H. Gulumbe ◽  
U.J.J. Ijah
Keyword(s):  
Crude Oil ◽  
Mixed Culture ◽  
Control Sample ◽  
Gas Chromatography Mass Spectrometry ◽  
Oil Degradation ◽  
Pollution Levels ◽  
Degrading Bacteria ◽  
Crude Oil Degradation ◽  
Light Oil ◽  
Oil Concentration

Petroleum hydrocarbon (PHCs) contamination of soil, freshwater and air is of global concern. The aim of this study was to assess the extent of crude oil degradation by mixed bacterial culture of different crude oil concentrations using gas chromatography-mass spectrometry (GC-MS). Seven oil samples were collected from petroleum-contaminated fields in Kano state, Nigeria, and screened for crude oil utilizing bacteria. A control sample of soil from an ecological garden (control soil) was also analyzed. Crude oil-degrading bacteria were isolated, enumerated and identified using cultural, morphological and biochemical characteristics, and screened for their ability to utilize Bonny Light Oil as a source of carbon and energy. Bacteria with the highest potential to utilize crude oil were selected and subjected to bioremediation studies at three different pollution levels (5%, 10% and 15%) for 56 days. The residual crude oil was assessed using GC-MS. The results revealed that the mixed culture completely degraded eighteen components ranging from C10 to C25 at 5% crude oil concentration while only C8 to C11 and C8 to C9 were degraded at 10 and 15% respectively. The results of this study indicated the potential of B. subtilis and P. aeruginosa in bioremediation of crude oil contaminated soil.

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