scholarly journals Compatibility in acoustic telemetry

2021 ◽  
Vol 9 (1) ◽  
Author(s):  
Jan Reubens ◽  
Kim Aarestrup ◽  
Carl Meyer ◽  
Andy Moore ◽  
Finn Okland ◽  
...  

AbstractAcoustic telemetry is widely used to investigate aquatic animal movement. Pulse position modulation (PPM) is an acoustic telemetry method that allows multiple unique identification codes to be transmitted at a single acoustic frequency, typically in the 69 kHz range. However, because the potential number of unique identification codes (i.e. tags) is ultimately limited by the number of pulses in the PPM signal, this poses a practical limitation. In addition, different manufacturers have developed different approaches to encoding the transmitted data, hampering compatibility across brands. A lack of broad compatibility across telemetry systems restricts users to a single manufacturer and operating system, reduces market competition and limits innovation. As the aquatic animal tracking research community organises towards networks of devices and data, incompatibility becomes more problematic and jeopardizes the unique scientific benefits offered by the networking approach. Here, we make a plea for collaboration among the manufacturers globally and propose a set of open protocols to ensure equipment interoperability as a medium-term solution.

Author(s):  
Jordan K. Matley ◽  
Natalie V. Klinard ◽  
Ana P. Barbosa Martins ◽  
Kim Aarestrup ◽  
Eneko Aspillaga ◽  
...  

2018 ◽  
Vol 9 (6) ◽  
pp. 1489-1502 ◽  
Author(s):  
Richard T. Kraus ◽  
Christopher M. Holbrook ◽  
Christopher S. Vandergoot ◽  
Taylor R. Stewart ◽  
Matthew D. Faust ◽  
...  

2020 ◽  
Author(s):  
Michael J. Noonan ◽  
Ricardo Martinez-Garcia ◽  
Grace H. Davis ◽  
Margaret C. Crofoot ◽  
Roland Kays ◽  
...  

AbstractEcologists have long been interested in linking individual behavior with higher-level processes. For motile species, this ‘upscaling’ is governed by how well any given movement strategy maximizes encounters with positive factors, and minimizes encounters with negative factors. Despite the importance of encounter events for a broad range of ecological processes, encounter theory has not kept pace with developments in animal tracking or movement modeling. Furthermore, existing work has focused primarily on the relationship between animal movement and encounter rates while no theoretical framework exists for directly relating individual movement with the spatial locations of encounter events in the environment.Here, we bridge this gap by introducing a new theoretical concept describing the long-term encounter location probabilities for movement within home ranges, termed the conditional distribution of encounters (CDE). We then derive this distribution, as well as confidence intervals, implement its statistical estimator into open source software, and demonstrate the broad ecological relevance of this novel concept.We first use simulated data to show how our estimator provides asymptotically consistent estimates. We then demonstrate the general utility of this method for three simulation-based scenarios that occur routinely in biological systems: i) a population of individuals with home ranges that overlap with neighbors; ii) a pair of individuals with a hard territorial border between their home ranges; and iii) a predator with a large home range that encompassed the home ranges of multiple prey individuals. Using GPS data from white-faced capuchins (Cebus capucinus) tracked on Barro Colorado Island, Panama, and sleepy lizards (Tiliqua rugosa) tracked in Bundey, South Australia, we then show how the CDE can be used to estimate the locations of territorial borders, identify key resources, quantify the location-specific potential for competition, and/or identify any changes in behaviour that directly result from location-specific encounter probability.This novel target distribution enables researchers to better understand the dynamics of populations of interacting individuals. Notably, the general estimation framework developed in this work builds straightforwardly off of home range estimation and requires no specialised data collection protocols. This method is now openly available via the ctmm R package.


Author(s):  
Moses Reuven ◽  
Yair Wiseman

A technique for minimizing the paging on a system with a very heavy memory usage is proposed. When there are processes with active memory allocations that should be in the physical memory, but their accumulated size exceeds the physical memory capacity. In such cases, the operating system begins swapping pages in and out the memory on every context switch. The authors lessen this thrashing by placing the processes into several bins, using Bin Packing approximation algorithms. They amend the scheduler to maintain two levels of scheduling - medium-term scheduling and short-term scheduling. The mediumterm scheduler switches the bins in a Round-Robin manner, whereas the short-term scheduler uses the standard Linux scheduler to schedule the processes in each bin. The authors prove that this feature does not necessitate adjustments in the shared memory maintenance. In addition, they explain how to modify the new scheduler to be compatible with some elements of the original scheduler like priority and realtime privileges. Experimental results show substantial improvement on very loaded memories.


2015 ◽  
Vol 3 (1) ◽  
Author(s):  
Colin A. Simpfendorfer ◽  
Charlie Huveneers ◽  
Andre Steckenreuter ◽  
Katherine Tattersall ◽  
Xavier Hoenner ◽  
...  

2021 ◽  
Author(s):  
Aaron J Corcoran ◽  
Michael R Schirmacher ◽  
Eric Black ◽  
Tyson L Hedrick

Tracking animal movement patterns using videography is an important tool in many biological disciplines ranging from biomechanics to conservation. Reduced costs of technology such as thermal videography and unmanned aerial vehicles has made video-based animal tracking more accessible, however existing software for processing acquired video limits the application of these methods. Here, we present a novel software program for high-throughput 2-D and 3-D animal tracking. ThruTracker provides tools to allow video tracking under a variety of conditions with minimal technical expertise or coding background and without the need for paid licenses. Notable capabilities include calibrating the intrinsic properties of thermal cameras; tracking and counting hundreds of animals at a time; and the ability to make 3-D calibrations without dedicated calibration objects. Automated 2-D and 3-D workflows are integrated to allow for analysis of largescale datasets. We tested ThruTracker with two case studies. The 2-D workflow is demonstrated by counting bats emerging from bridges and caves using thermal Videography. Tests show that ThruTracker has a similar accuracy compared to humans under a variety of conditions. The 3-D workflow is shown for making accurate calibrations for tracking bats and birds at wind turbines using only the wind turbine itself as a calibration object. ThruTracker is a robust software program for tracking moving animals in 2-D and 3-D. Major applications include counting animals such as bats, birds, and fish that form large aggregations, and documenting movement trajectories over medium spatial scales (~100,000 m3). When combined with emerging technologies, we expect videographic techniques to continue to see widespread adoption for an increasing range of biological applications.


Science ◽  
2020 ◽  
Vol 370 (6517) ◽  
pp. 712-715
Author(s):  
Sarah C. Davidson ◽  
Gil Bohrer ◽  
Eliezer Gurarie ◽  
Scott LaPoint ◽  
Peter J. Mahoney ◽  
...  

The Arctic is entering a new ecological state, with alarming consequences for humanity. Animal-borne sensors offer a window into these changes. Although substantial animal tracking data from the Arctic and subarctic exist, most are difficult to discover and access. Here, we present the new Arctic Animal Movement Archive (AAMA), a growing collection of more than 200 standardized terrestrial and marine animal tracking studies from 1991 to the present. The AAMA supports public data discovery, preserves fundamental baseline data for the future, and facilitates efficient, collaborative data analysis. With AAMA-based case studies, we document climatic influences on the migration phenology of eagles, geographic differences in the adaptive response of caribou reproductive phenology to climate change, and species-specific changes in terrestrial mammal movement rates in response to increasing temperature.


2006 ◽  
Vol 57 (1) ◽  
pp. 1 ◽  
Author(s):  
M. R. Heupel ◽  
J. M. Semmens ◽  
A. J. Hobday

The recent introduction of low-cost, moored data-logging acoustic receivers has provided opportunities for tracking marine organisms over small (hundreds of metres) and large scales (hundreds of kilometres). Acoustic receivers have been deployed in many different environments to examine specific hypotheses regarding the movement of aquatic species. This technology provides many advantages for studying aquatic animal movement patterns, but also has limitations and provides unique difficulties for users. Study design, applications, advantages and limitations are discussed with examples from past and current studies. Data management and analysis techniques are in their infancy and few standardised techniques exist. Complications with data management and potential data analysis techniques are discussed. Examples from the literature are utilised wherever possible to provide useful references.


2020 ◽  
Author(s):  
Moritz Mercker ◽  
Philipp Schwemmer ◽  
Verena Peschko ◽  
Leonie Enners ◽  
Stefan Garthe

Abstract Background: New wildlife telemetry and tracking technologies have become available in the last decade, leading to a large increase in the volume and resolution of animal tracking data. These technical developments have been accompanied by various statistical tools aimed at analysing the data obtained by these methods. Methods: We used simulated habitat and tracking data to compare some of the different statistical methods frequently used to infer local resource selection and large-scale attraction/avoidance from tracking data. Notably, we compared the performances of spatial logistic regression models (SLRMs), point process models (PPMs), and integrated step selection models ((i)SSMs) and their interplays with habitat, tracking-device, and animal movement properties. Results: We demonstrated that SLRMs were inappropriate for large-scale attraction studies and prone to bias when inferring habitat selection. In contrast, PPMs and (i)SSMs showed comparable (unbiased) performances for both habitat selection and large-scale effect studies. However, (i)SSMs had several advantages over PPMs with respect to robustness, user-friendly implementation, and computation time. Conclusions: We recommend the use of (i)SSMs to infer habitat selection or large-scale attraction/avoidance from animal tracking data. This method has several practical advantages over PPMs and additionally extends SSMs, thus increasing its predictive capacity and allowing the derivation of mechanistic movement models.


2019 ◽  
Vol 55 (2) ◽  
pp. 1-4
Author(s):  
Abdullah Saud Almansouri ◽  
Khaled Nabil Salama ◽  
Jurgen Kosel

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