Regulation and Control of Metabolic Pathways

Author(s):  
H. Kacser
2011 ◽  
Vol 8 (3) ◽  
pp. 195-209 ◽  
Author(s):  
Anália Lourenço ◽  
Sónia Carneiro ◽  
José P. Pinto ◽  
Miguel Rocha ◽  
Eugénio C. Ferreira ◽  
...  

Summary The present study addresses the regulatory network of Escherichia coli and offers a global view of the short- and long-term regulation of its metabolic pathways. The regulatory mechanisms responsible for key metabolic activities and the structure behind such mechanisms are detailed. Most metabolic functions are dependent on the activity of transcriptional regulators over gene expression - the so-called long-term regulation. However, enzymatic regulation - the so-called short-term regulation - often overlays transcriptional regulation and even, in particular metabolic pathways, enzymatic regulation may prevail. As such, understanding the balance between these two types of regulation is necessary to be able to predict and control cell responses, specifically cell responses to the various environmental stresses.


Metabolites ◽  
2021 ◽  
Vol 11 (3) ◽  
pp. 178
Author(s):  
Yu Ra Lee ◽  
Bark Lynn Lew ◽  
Woo Young Sim ◽  
Jongki Hong ◽  
Bong Chul Chung

Pattern baldness has been associated with the male hormone, dihydrotestosterone. In this study, we tried to determine how the overall metabolic pathways of pattern baldness differ in patients and in normal controls. Our study aimed to identify alterations in hair metabolomic profiles in order to identify possible markers of pattern baldness according to sex. Untargeted metabolomics profiling in pattern baldness patients and control subjects was conducted using ultra-performance liquid chromatography-mass spectrometry. To identify significantly altered metabolic pathways, partial least squares discriminant analysis was performed. Our analysis indicated differences in steroid biosynthesis pathway in both males and females. However, there was a remarkable difference in the androgen metabolic pathway in males, and the estrogen metabolic and arachidonic acid pathways in females. For the first time, we were able to confirm the metabolic pathway in pattern baldness patients using hair samples. Our finding improves understanding of pattern baldness and highlights the need to link pattern baldness and sex-related differences.


2021 ◽  
Vol 2021 ◽  
pp. 1-8
Author(s):  
Mahbobeh Latifimehr ◽  
Ali Asghar Rastegari ◽  
Zahra Zamani ◽  
Pezhman Fard Esfahani ◽  
Leila Nazari

Purpose. Recurrent miscarriage applies to pregnancy loss expulsion of the fetus within the first 24 weeks of pregnancy. This study is aimed at comparatively investigating the sera of women with RM with those who have no record of miscarriages to identify if there were any metabolite and metabolic pathway differences using 1H NMR spectroscopy. Methods. Serum samples were collected from women with RM ( n = 30 ) and those who had no records of RM ( n = 30 ) to obtain metabolomics information. 1H NMR spectroscopy was carried out on the samples using Carr Purcell Meiboom Gill spin echo; also, Partial Least Squares Discriminant Analysis was performed in MATLAB software using the ProMetab program to obtain the classifying chemical shifts; the metabolites were identified by using the Human Metabolome Database (HMDB) in both the experimental and control groups. The pathway analysis option of the Metaboanalyst.ca website was used to identify the changed metabolic pathways. Results. The results of the study revealed that 14 metabolites were different in the patients with RM. Moreover, the pathway analysis showed that taurine and hypotaurine metabolism along with phenylalanine, tyrosine, and tryptophan biosynthesis was significantly different in patients with RM. Conclusion. The present study proposes that any alteration in the above metabolic pathways might lead to metabolic dysfunctions which may result in a higher probability of RM.


Genes ◽  
2021 ◽  
Vol 12 (7) ◽  
pp. 995
Author(s):  
Hugo Gerardo Lazcano-Ramírez ◽  
Roberto Gamboa-Becerra ◽  
Irving J. García-López ◽  
Ricardo A. Chávez Montes ◽  
David Díaz-Ramírez ◽  
...  

Transcription factors are important regulators of gene expression. They can orchestrate the activation or repression of hundreds or thousands of genes and control diverse processes in a coordinated way. This work explores the effect of a master regulator of plant development, BOLITA (BOL), in plant metabolism, with a special focus on specialized metabolism. For this, we used an Arabidopsis thaliana line in which the transcription factor activity can be induced. Fingerprinting metabolomic analyses of whole plantlets were performed at different times after induction. After 96 h, all induced replicas clustered as a single group, in contrast with all controls which did not cluster. Metabolomic analyses of shoot and root tissues enabled the putative identification of differentially accumulated metabolites in each tissue. Finally, the analysis of global gene expression in induced vs. non-induced root samples, together with enrichment analyses, allowed the identification of enriched metabolic pathways among the differentially expressed genes and accumulated metabolites after the induction. We concluded that the induction of BOL activity can modify the Arabidopsis metabolome. Future work should investigate whether its action is direct or indirect, and the implications of the metabolic changes for development regulation and bioprospection.


1969 ◽  
Vol 23 (1) ◽  
pp. 91-96 ◽  
Author(s):  
C. J. F. Spry ◽  
K. G. Piper

1. Rats were made severely iron-deficient by feeding with Fe-deficient diets, which contained adequate amounts of zinc.2. Ten days after an oral dose of 250 μg65Zn the Fe-deficient rats had retained 17% whereas control rats had retained only 8% of the dose.3. When unlabelled Zn was given intravenously to the Fe-deficient and control rats there was a reduction in retention of the orally administered 65Zn. This effect was not produced when Fe was given before the oral dose of 65Zn.4. Total body Zn, whole blood Zn and plasma Zn concentrations of the rats were measured by atomic absorption spectrophotometry. Both the Fe-deficient rats and the control rats had the same total body Zn calculated as a proportion of body-weight. The plasma Zn concentrations were normal in all the animals. Blood cell Zn concentrations in the Fe-deficient animals were raised.5. The blood cell Zn concentration was directly related to the reticulocyte count in all the rats.6. It was concluded that Fe and Zn are absorbed by different metabolic pathways, and that there is an increased turnover of Zn in the Fe-deficient rats, possibly related to the short lifespan and increased Zn concentration of Fe-deficient rat erythrocytes. In the rat abnormalities of Zn concentration can only be considered significant if Fe status is also known.


2017 ◽  
Vol 68 (1) ◽  
pp. 27
Author(s):  
Xingwang Yu ◽  
Aijun Yang ◽  
Andrew T. James

Sulfonylurea herbicides have attracted renewed interest as an alternative for weed management and control of weed resistance in soybean production. In this proteomic study, we compared changes in the protein profiles in 10-day-old seedlings from a simple roll-paper germination method treated with 0.1 µm metsulfuron methyl (MSM), a compound from the sulfonylurea family. Seeds from susceptible or tolerant soybeans, four lines each, were treated with 0, 0.01, 0.1, 1 or 10 µm MSM and the number of normal seeds germinating was counted after 10 days. MSM at ≥0.1 µm significantly reduced normal germination in the sulfonylurea-susceptible group. Comparative proteomic analysis of the proteins extracted from the germinations treated with 0 or 0.1 µm MSM revealed a much greater number of proteins affected in the sulfonylurea-susceptible genotype than the tolerant type. From a total 227 protein spots with significant differential (>2-fold) accumulation, 142 unique proteins were identified. Functional analysis revealed that about one-third of these proteins were associated with metabolism, followed by energy (24.3%), defence–stress response (22.9%), and protein synthesis and storage (16.7%). Sulfonylurea herbicides, specifically MSM, greatly affected these metabolic pathways in the susceptible genotype through changed accumulation of many enzymes and proteins.


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