Environmental Genomics: The Impact of Transgenic Crops on Soil Quality, Microbial Diversity and Plant-Associated Communities

2015 ◽  
pp. 309-331 ◽  
Author(s):  
Jeyabalan Sangeetha ◽  
Devarajan Thangadurai ◽  
Muniswamy David ◽  
Roopa Somanath ◽  
Abhishek Mundaragi ◽  
...  
Keyword(s):  
Microbial Diversity ◽  
Soil Quality ◽  
Transgenic Crops ◽  
Environmental Genomics ◽  
The Impact

scholarly journals Effects of Psychotropics on the Microbiome in Patients With Depression and Anxiety: Considerations in a Naturalistic Clinical Setting

2020 ◽  
Author(s):  
Yoshihiro Tomizawa ◽  
Shunya Kurokawa ◽  
Daiki Ishii ◽  
Katsuma Miyaho ◽  
Chiharu Ishii ◽  
...  
Keyword(s):  
Gut Microbiota ◽  
Microbial Diversity ◽  
Depressive Disorders ◽  
Alpha Diversity ◽  
16S Rrna Gene Sequencing ◽  
Shannon Index ◽  
Rrna Gene ◽  
Depression And Anxiety ◽  
The Impact ◽  
Whole Tree

Abstract Background The antibacterial effects of psychotropics may be part of their pharmacological effects when treating depression. However, limited studies have focused on gut microbiota in relation to prescribed medication. Method We longitudinally investigated the relationship between patients’ prescribed medications and intestinal bacterial diversity in a naturalistic treatment course for patients with major depressive disorders and anxiety disorders. Patients were recruited and their stool was collected at 3 time points during their usual psychiatric treatments. Gut microbiota were analyzed using 16S rRNA gene sequencing. We examined the impact of psychotropics (i.e., antidepressants, anxiolytics, antipsychotics) on their gut microbial diversity and functions. Results We collected 246 stool samples from 40 patients. Despite no differences in microbial diversity between medication groups at the baseline, over the course of treatment, phylogenic diversity whole-tree diversity decreased in patients on antipsychotics compared with patients without (P = .027), and beta diversity followed this trend. Based on a fixed-effect model, antipsychotics predicted microbial diversity; the higher doses correlated with less diversity based on the Shannon index and phylogenic diversity whole tree (estimate = −0.00254, SE = 0.000595, P < .0001; estimate = −0.02644, SE = 0.00833, P = .002, respectively). Conclusion Antipsychotics may play a role in decreasing the alpha diversity of the gut microbiome among patients with depression and anxiety, and our results indicate a relationship with medication dosage. Future studies are warranted and should consider patients’ types and doses of antipsychotics in order to further elucidate the mechanisms of gut-brain interactions in psychiatric disorders.

Effect of Tillage Systems on Soil Organic Carbon and Soil Quality in a Purple Paddy Soil

2011 ◽  
Vol 183-185 ◽  
pp. 1190-1194
Author(s):  
Jun Ke Zhang ◽  
Qing Ju Hao ◽  
Chang Sheng Jiang ◽  
Yan Wu
Keyword(s):  
Organic Carbon ◽  
Soil Quality ◽  
Paddy Soil ◽  
Conventional Tillage ◽  
Water Infiltration ◽  
Purple Soil ◽  
Tillage Systems ◽  
Field Station ◽  
No Till ◽  
The Impact

The impact of conservation tillage practices on carbon sequestration has been of great interest in recent years. This experiment analyzed the organic carbon status of soils sampled at depth increments from 0 to 60 cm after 20 years in a purple paddy soil. The tillage experiment was established in the Key Field Station for Monitoring of Eco-Environment of Purple Soil of the Ministry of Agriculture of China, located in the farm of Southwest University (30°26′N, 106°26′E), Chongqing. In this paper, five tillage treatments including conventional tillage with rice only system (DP), conventional tillage with rotation of rice and rape system (SL), no-till and ridge culture with rotation of rice and rape system (LM), no-till and plain culture with rotation of rice and rape system (XM) and tillage and ridge culture with rotation of rice and rape system (LF) were selected as research objectives to measure SOC storage and stratification ratio of SOC (CSR). The SOC storage under different tillage systems was calculated based on an equivalent soil mass. The CSR can be used as an indicator of soil quality because surface organic matter is essential to erosion control, water infiltration, and the conservation of nutrients. Results showed that in soil under no-till SOC was concentrated near the surface, while in tilled soil SOC decreased equably with the increase of soil depth. The difference of SOC contents between the five tillage systems was the largest in the top soil and the lowest in the bottom soil. The order of SOC storage was LM (158.52 Mg C•ha-1) >DP (106.74 Mg C•ha-1) >XM (100.11 Mg C•ha-1) >LF (93.11 Mg C•ha-1) >SL (88.59 Mg C•ha-1), LM treatment was significantly higher than the other treatments. The CSR of 0-10/50-60 cm was 2.65, 2.70 and 2.14 under LM, XM and LF treatments, while 1.54 and 1.92 under DP and SL treatments. We considered CSR>2 indicate an improvement in soil quality produced by changing from tillage to no-tillage, as well as changing from plane to ridge. Overall, long-term LM treatment is a valid strategy for increasing SOC storage and improving soil quality in a purple paddy soil in Southwest China.

scholarly journals Longitudinal sampling of external mucosae in farmed European seabass reveals the impact of water temperature on bacterial dynamics

2021 ◽  
Vol 1 (1) ◽  
Author(s):  
Daniela Rosado ◽  
Raquel Xavier ◽  
Jo Cable ◽  
Ricardo Severino ◽  
Pedro Tarroso ◽  
...  
Keyword(s):  
Environmental Factors ◽  
Microbial Diversity ◽  
Water Temperature ◽  
Abiotic Factors ◽  
Seasonal Effect ◽  
Microbial Composition ◽  
Surrounding Water ◽  
European Seabass ◽  
And Function ◽  
The Impact

AbstractFish microbiota are intrinsically linked to health and fitness, but they are highly variable and influenced by both biotic and abiotic factors. Water temperature particularly limits bacterial adhesion and growth, impacting microbial diversity and bacterial infections on the skin and gills. Aquaculture is heavily affected by infectious diseases, especially in warmer months, and industry practices often promote stress and microbial dysbiosis, leading to an increased abundance of potentially pathogenic bacteria. In this regard, fish mucosa health is extremely important because it provides a primary barrier against pathogens. We used 16 rRNA V4 metataxonomics to characterize the skin and gill microbiota of the European seabass, Dicentrarchus labrax, and the surrounding water over 12 months, assessing the impact of water temperature on microbial diversity and function. We show that the microbiota of external mucosae are highly dynamic with consistent longitudinal trends in taxon diversity. Several potentially pathogenic genera (Aliivibrio, Photobacterium, Pseudomonas, and Vibrio) were highly abundant, showing complex interactions with other bacterial genera, some of which with recognized probiotic activity, and were also significantly impacted by changes in temperature. The surrounding water temperature influenced fish microbial composition, structure and function over time (days and months). Additionally, dysbiosis was more frequent in warmer months and during transitions between cold/warm months. We also detected a strong seasonal effect in the fish microbiota, which is likely to result from the compound action of several unmeasured environmental factors (e.g., pH, nutrient availability) beyond temperature. Our results highlight the importance of performing longitudinal studies to assess the impact of environmental factors on fish microbiotas.

Distribution and Assessment of Heavy Metals in Trifolium dubium (Little Hop Clover) and the Impact of Soil Quality

2018 ◽  
Vol 52 (7) ◽  
pp. 1165-1176
Author(s):  
Thaveshan Gounden ◽  
Roshila Moodley ◽  
Sreekantha Babu Jonnalagadda
Keyword(s):  
Heavy Metals ◽  
Soil Quality ◽  
The Impact

scholarly journals Determination of environmental problems of agricultural nature management based on modular geochemical indicators

2020 ◽  
Vol 28 (1) ◽  
pp. 57-64
Author(s):  
Almobarak Falak ◽  
Lidia A. Mezhova
Keyword(s):  
Land Use ◽  
Natural Resources ◽  
Soil Quality ◽  
Agricultural Land ◽  
Methodological Approach ◽  
Arable Land ◽  
Animal Husbandry ◽  
Environmental Problems ◽  
Nature Management ◽  
The Impact

Central Chernozem is one of the largest agricultural regions in Russia. As a result of the long period of natural resources use the anthropogenic load on agricultural lands is increasing. The result of agricultural nature management is the increase of land degradation processes. Voronezh Region has a high agro-climatic potential, most of the territory is occupied by agricultural land, arable land prevails among them. Soil degradation is the most acute problem. There is a need to assess the impact of agricultural natural resources use on land resources of the region. Modular coefficients for assessment of geochemical impact of agriculture and animal husbandry on agricultural systems are proposed. The developed factor is a tool for identification of negative land use processes and environmental problems. The article deals with the issues of ecologically oriented, scientifically grounded strategy of agricultural nature management. Ecological approach to assessment of soil quality in the future will develop a strategy for balanced land use. The article has a scientific and practical character and is aimed at the development of methods of ecological assessment of soil quality. The proposed methodological approach identifies destructive processes in soils. For ecologically oriented strategy of development of regions it is important to define maximum allowable agricultural loads for preservation of sustainable environment.

scholarly journals Płatności prośrodowiskowe jako instrument ochrony użytkowej biosfery w rolnictwie

2020 ◽  
Vol 29 (2) ◽  
pp. 37
Author(s):  
Beata Jeżyńska
Keyword(s):  
Environmental Factors ◽  
Soil Quality ◽  
Agricultural Policy ◽  
Common Agricultural Policy ◽  
Agricultural Production ◽  
Environmental Aspects ◽  
The Common ◽  
New Guidelines ◽  
Quality Assessments ◽  
The Impact

<p>The need to keep the expected level of production in agriculture generates a serious burden on the environment. The most important environmental factors exposed to the impact of agriculture include biodiversity and water, air, and soil quality. Assessments of all these environmental aspects related to agricultural production are negative. The condition of the agricultural environment has been subject to rapid deterioration. In such a situation, environmental instruments have drawn particular attention from the European legislature when developing new guidelines of the Common Agricultural Policy to be applicable after 2020.</p>

Biofunctool®: a new framework to assess the impact of land management on soil quality. Part A: concept and validation of the set of indicators

2019 ◽  
Vol 97 ◽  
pp. 100-110 ◽  
Author(s):  
Alexis Thoumazeau ◽  
Cécile Bessou ◽  
Marie-Sophie Renevier ◽  
Jean Trap ◽  
Raphaël Marichal ◽  
...  
Keyword(s):  
Soil Quality ◽  
Land Management ◽  
The Impact ◽  
New Framework

scholarly journals Comprehensive evaluation of soil quality in a desert steppe influenced by industrial activities in northern China

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Zhe Xu ◽  
Wenbao Mi ◽  
Nan Mi ◽  
Xingang Fan ◽  
Yao Zhou ◽  
...  
Keyword(s):  
Soil Quality ◽  
Quality Index ◽  
Northern Region ◽  
Main Element ◽  
Available Phosphorus ◽  
Desert Steppe ◽  
Geostatistical Model ◽  
Soil Quality Index ◽  
Industrial Activities ◽  
The Impact

AbstractDesert steppe soil security issues have been the focus of attention. Therefore, to understand the impact of industrial activities on the soil quality of desert grasslands, this experiment investigated the Gaoshawo Industrial Concentration Zone in Yanchi County. Based on the distance and direction from the industrial park, sample plots were established at intervals of 1–2 km. A total of 82 surface soil samples (0–20 cm) representing different pollution sources were collected. The samples were analysed for pH, total nitrogen, total phosphorus, available phosphorus, available potassium, organic matter, copper (Cu), cadmium (Cd), chromium (Cr), lead (Pb), and zinc (Zn). The desert steppe soil quality was analysed based on the integrated fertility index (IFI) and the Nemerow pollution index (PN), followed by the calculation of the comprehensive soil quality index (SQI), which considers the most suitable soil quality indicators through a geostatistical model. The results showed that the IFI was 0.393, indicating that the soil fertility was relatively poor. Excluding the available potassium, the nugget coefficients of the fertility indicators were less than 25% and showed strong spatial autocorrelation. The average values of Cu, Cd, Cr, Pb and Zn were 21.64 ± 3.26, 0.18 ± 0.02, 44.99 ± 21.23, 87.18 ± 25.84, and 86.63 ± 24.98 mg·kg−1, respectively; the nugget coefficients of Cr, Pb and Zn were 30.79–47.35%. Pb was the main element causing heavy metal pollution in the study area. Higher PN values were concentrated north of the highway in the study area, resulting in lower soil quality in the northern region and a trend of decreasing soil quality from south to north. The results of this research showed that the average SQI was 0.351 and the soil quality was extremely low. Thus, industrial activities and transportation activities in the Gaoshawo Industrial Zone significantly impact the desert steppe soil quality index.

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