scholarly journals Control of SRC molecular dynamics encodes distinct cytoskeletal responses by specifying signaling pathway usage

2021 ◽  
Vol 134 (2) ◽  
pp. jcs254599
Author(s):  
Adèle Kerjouan ◽  
Cyril Boyault ◽  
Christiane Oddou ◽  
Edwige Hiriart-Bryant ◽  
Alexei Grichine ◽  
...  

ABSTRACTUpon activation by different transmembrane receptors, the same signaling protein can induce distinct cellular responses. A way to decipher the mechanisms of such pleiotropic signaling activity is to directly manipulate the decision-making activity that supports the selection between distinct cellular responses. We developed an optogenetic probe (optoSRC) to control SRC signaling, an example of a pleiotropic signaling node, and we demonstrated its ability to generate different acto-adhesive structures (lamellipodia or invadosomes) upon distinct spatio-temporal control of SRC kinase activity. The occurrence of each acto-adhesive structure was simply dictated by the dynamics of optoSRC nanoclusters in adhesive sites, which were dependent on the SH3 and Unique domains of the protein. The different decision-making events regulated by optoSRC dynamics induced distinct downstream signaling pathways, which we characterized using time-resolved proteomic and network analyses. Collectively, by manipulating the molecular mobility of SRC kinase activity, these experiments reveal the pleiotropy-encoding mechanism of SRC signaling.

2019 ◽  
Author(s):  
Adèle Kerjouan ◽  
Cyril Boyault ◽  
Christiane Oddou ◽  
Edwige Hiriart-Bryant ◽  
Alexei Grichine ◽  
...  

AbstractMulti-domain signaling proteins sample numerous stimuli to coordinate distinct cellular responses. Understanding the mechanisms of their pleiotropic signaling activity requires to directly manipulate their activity of decision leading to distinct cellular responses. We developed an optogenetic probe, optoSRC, to control spatio-temporally the SRC kinase, a representative example of versatile signaling node, and challenge its ability to generate different cellular responses. Genesis of different local molecular fluxes of the same optoSRC to adhesion sites, was sufficient to trigger distinct and specific acto-adhesive responses. Collectively, this study reveals how hijacking the pleiotropy of SRC signaling by modulating in space and time subcellular molecular fluxes of active SRC kinases.


2010 ◽  
Vol 316 (1) ◽  
pp. 55-67 ◽  
Author(s):  
Dorte Stautz ◽  
Archana Sanjay ◽  
Matilde Thye Hansen ◽  
Reidar Albrechtsen ◽  
Ulla M. Wewer ◽  
...  

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Abhik Datta ◽  
Kian Fong Ng ◽  
Deepan Balakrishnan ◽  
Melissa Ding ◽  
See Wee Chee ◽  
...  

AbstractFast, direct electron detectors have significantly improved the spatio-temporal resolution of electron microscopy movies. Preserving both spatial and temporal resolution in extended observations, however, requires storing prohibitively large amounts of data. Here, we describe an efficient and flexible data reduction and compression scheme (ReCoDe) that retains both spatial and temporal resolution by preserving individual electron events. Running ReCoDe on a workstation we demonstrate on-the-fly reduction and compression of raw data streaming off a detector at 3 GB/s, for hours of uninterrupted data collection. The output was 100-fold smaller than the raw data and saved directly onto network-attached storage drives over a 10 GbE connection. We discuss calibration techniques that support electron detection and counting (e.g., estimate electron backscattering rates, false positive rates, and data compressibility), and novel data analysis methods enabled by ReCoDe (e.g., recalibration of data post acquisition, and accurate estimation of coincidence loss).


2020 ◽  
Vol 21 (18) ◽  
pp. 6650
Author(s):  
Usha Kabilan ◽  
Tyson E. Graber ◽  
Tommy Alain ◽  
Dmitry Klokov

Protein synthesis, or mRNA translation, is one of the most energy-consuming functions in cells. Translation of mRNA into proteins is thus highly regulated by and integrated with upstream and downstream signaling pathways, dependent on various transacting proteins and cis-acting elements within the substrate mRNAs. Under conditions of stress, such as exposure to ionizing radiation, regulatory mechanisms reprogram protein synthesis to translate mRNAs encoding proteins that ensure proper cellular responses. Interestingly, beneficial responses to low-dose radiation exposure, known as radiation hormesis, have been described in several models, but the molecular mechanisms behind this phenomenon are largely unknown. In this review, we explore how differences in cellular responses to high- vs. low-dose ionizing radiation are realized through the modulation of molecular pathways with a particular emphasis on the regulation of mRNA translation control.


2003 ◽  
Vol 14 (8) ◽  
pp. 649-652 ◽  
Author(s):  
L. R. M. Bevilaqua ◽  
J. I. Rossato ◽  
J. H. Medina ◽  
I. Izquierdo ◽  
M. Cammarota

Neuroreport ◽  
2002 ◽  
Vol 13 (8) ◽  
pp. 1057-1061 ◽  
Author(s):  
Pelin Kelicen ◽  
Ippolita Cantuti-Castelvetri ◽  
Can Pekiner ◽  
K. Eric Paulson

2006 ◽  
Vol 5 (12) ◽  
pp. 3014-3022 ◽  
Author(s):  
Alan Serrels ◽  
Iain R.J. Macpherson ◽  
T.R. Jeffry Evans ◽  
Francis Y. Lee ◽  
Edwin A. Clark ◽  
...  

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