scholarly journals pubassistant.ch: consolidating publication profiles of researchers

F1000Research ◽  
2021 ◽  
Vol 10 ◽  
pp. 989
Author(s):  
Reto Gerber ◽  
Mark D. Robinson
Keyword(s):  
Open Access ◽  
Google Scholar ◽  
Scientific Publications ◽  
Interactive Exploration ◽  
Shiny App ◽  
R Shiny

Online accounts to keep track of scientific publications, such as Open Researcher and Contributor ID (ORCID) or Google Scholar, can be time consuming to maintain and synchronize. Furthermore, the open access status of publications is often not easily accessible, hindering potential opening of closed publications. To lessen the burden of managing personal profiles, we developed a R shiny app that allows publication lists from multiple platforms to be retrieved and consolidated, as well as interactive exploration and comparison of publication profiles. A live version can be found at pubassistant.ch.

scholarly journals pubassistant.ch: consolidating publication profiles of researchers

F1000Research ◽  
2021 ◽  
Vol 10 ◽  
pp. 989
Author(s):  
Reto Gerber ◽  
Mark D. Robinson
Keyword(s):  
Open Access ◽  
Google Scholar ◽  
Scientific Publications ◽  
Interactive Exploration ◽  
Shiny App ◽  
R Shiny

Online accounts to keep track of scientific publications, such as Open Researcher and Contributor ID (ORCID) or Google Scholar, can be time consuming to maintain and synchronize. Furthermore, the open access status of publications is often not easily accessible, hindering potential opening of closed publications. To lessen the burden of managing personal profiles, we developed a R shiny app that allows publication lists from multiple platforms to be retrieved and consolidated, as well as interactive exploration and comparison of publication profiles. A live version can be found at pubassistant.ch.

scholarly journals Evidence of Open Access of scientific publications in Google Scholar: a large-scale analysis

2018 ◽  
Author(s):  
Alberto Martín-Martín ◽  
Rodrigo Costas ◽  
Thed van Leeuwen ◽  
Emilio Delgado López-Cózar
Keyword(s):  
Open Access ◽  
Large Scale ◽  
Web Of Science ◽  
Google Scholar ◽  
Scale Analysis ◽  
Scientific Publications ◽  
Large Scale Analysis ◽  
Citation Indexes ◽  
Legal Forms ◽  
The Web

This article uses Google Scholar (GS) as a source of data to analyse Open Access (OA) levels across all countries and fields of research. All articles and reviews with a DOI and published in 2009 or 2014 and covered by the three main citation indexes in the Web of Science (2,269,022 documents) were selected for study. The links to freely available versions of these documents displayed in GS were collected. To differentiate between more reliable (sustainable and legal) forms of access and less reliable ones, the data extracted from GS was combined with information available in DOAJ, CrossRef, OpenDOAR, and ROAR. This allowed us to distinguish the percentage of documents in our sample that are made OA by the publisher (23.1%, including Gold, Hybrid, Delayed, and Bronze OA) from those available as Green OA (17.6%), and those available from other sources (40.6%, mainly due to ResearchGate). The data shows an overall free availability of 54.6%, with important differences at the country and subject category levels. The data extracted from GS yielded very similar results to those found by other studies that analysed similar samples of documents, but employed different methods to find evidence of OA, thus suggesting a relative consistency among methods.

scholarly journals Evidence of open access of scientific publications in Google Scholar: A large-scale analysis

2018 ◽  
Vol 12 (3) ◽  
pp. 819-841 ◽  
Author(s):  
Alberto Martín-Martín ◽  
Rodrigo Costas ◽  
Thed van Leeuwen ◽  
Emilio Delgado López-Cózar
Keyword(s):  
Open Access ◽  
Large Scale ◽  
Google Scholar ◽  
Scale Analysis ◽  
Scientific Publications ◽  
Large Scale Analysis

GREEN OPEN ACCESS IN KENYA: A REVIEW OF THE CONTENT, POLICIES AND USAGE OF INSTITUTIONAL REPOSITORIES

Mousaion ◽  
2016 ◽  
Vol 33 (3) ◽  
pp. 25-54
Author(s):  
Wanyenda Leonard Chilimo
Keyword(s):  
Developing Countries ◽  
Open Access ◽  
Descriptive Study ◽  
Google Scholar ◽  
Research Institutions ◽  
Journal Articles ◽  
Content Type ◽  
Institutional Repositories ◽  
Current State ◽  
Theses And Dissertations

 There is scant research-based evidence on the development and adoption of open access (OA) and institutional repositories (IRs) in Africa, and in Kenya in particular. This article reports on a study that attempted to fill that gap and provide feedback on the various OA projects and advocacy work currently underway in universities and research institutions in Kenya and in other developing countries. The article presents the findings of a descriptive study that set out to evaluate the current state of IRs in Kenya. Webometric approaches and interviews with IR managers were used to collect the data for the study. The findings showed that Kenya has made some progress in adopting OA with a total of 12 IRs currently listed in the Directory of Open Access Repositories (OpenDOAR) and five mandatory self-archiving policies listed in the Registry of Open Access Repositories Mandatory Archiving Policies (ROARMAP). Most of the IRs are owned by universities where theses and dissertations constitute the majority of the content type followed by journal articles. The results on the usage and impact of materials deposited in Kenyan IRs indicated that the most viewed publications in the repositories also received citations in Google Scholar, thereby signifying their impact and importance. The results also showed that there was a considerable interest in Swahili language publications among users of the repositories in Kenya.

Unified exact design with early stopping rules for single arm clinical trials with multiple endpoints

2021 ◽  
pp. 096228022110130
Author(s):  
Wei Wei ◽  
Denise Esserman ◽  
Michael Kane ◽  
Daniel Zelterman
Keyword(s):  
Clinical Trials ◽  
Early Phase ◽  
Decision Rules ◽  
Stopping Rules ◽  
Multiple Endpoints ◽  
Shiny App ◽  
R Shiny ◽  
Early Phase Clinical Trials ◽  
User Friendly ◽  
Exact Design

Adaptive designs are gaining popularity in early phase clinical trials because they enable investigators to change the course of a study in response to accumulating data. We propose a novel design to simultaneously monitor several endpoints. These include efficacy, futility, toxicity and other outcomes in early phase, single-arm studies. We construct a recursive relationship to compute the exact probabilities of stopping for any combination of endpoints without the need for simulation, given pre-specified decision rules. The proposed design is flexible in the number and timing of interim analyses. A R Shiny app with user-friendly web interface has been created to facilitate the implementation of the proposed design.

scholarly journals A resource to explore the discovery of rare diseases and their causative genes

2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Friederike Ehrhart ◽  
Egon L. Willighagen ◽  
Martina Kutmon ◽  
Max van Hoften ◽  
Leopold M. G. Curfs ◽  
...  
Keyword(s):  
Rare Disease ◽  
Rare Diseases ◽  
Genetic Background ◽  
Gene Discovery ◽  
Google Scholar ◽  
Semantic Model ◽  
Causative Gene ◽  
Scientific Publications ◽  
Monogenic Diseases ◽  
First Time

AbstractHere, we describe a dataset with information about monogenic, rare diseases with a known genetic background, supplemented with manually extracted provenance for the disease itself and the discovery of the underlying genetic cause. We assembled a collection of 4166 rare monogenic diseases and linked them to 3163 causative genes, annotated with OMIM and Ensembl identifiers and HGNC symbols. The PubMed identifiers of the scientific publications, which for the first time described the rare diseases, and the publications, which found the genes causing the diseases were added using information from OMIM, PubMed, Wikipedia, whonamedit.com, and Google Scholar. The data are available under CC0 license as spreadsheet and as RDF in a semantic model modified from DisGeNET, and was added to Wikidata. This dataset relies on publicly available data and publications with a PubMed identifier, but by our effort to make the data interoperable and linked, we can now analyse this data. Our analysis revealed the timeline of rare disease and causative gene discovery and links them to developments in methods.

Exploring Possibilities for Transforming Established Subscription-based Scientific Journals into Open Access Journals

2016 ◽  
Vol 55 (06) ◽  
pp. 481-487 ◽  
Author(s):  
Stefanie Kuballa ◽  
Mareike Schulze ◽  
Claudia Böhm ◽  
Olaf Gefeller ◽  
Jan Haaf ◽  
...  
Keyword(s):  
Open Access ◽  
Information And Communication Technologies ◽  
Communication Technologies ◽  
Open Access Publishing ◽  
Scientific Publications ◽  
Open Access Journals ◽  
Important Approach ◽  
Information And Communication ◽  
International Research Project

SummaryBackground: Based on today‘s information and communication technologies the open access paradigm has become an important approach for adequately communicating new scientific knowledge.Objectives: Summarizing the present situa -tion for journal transformation. Presenting criteria for adequate transformation as well as a specific approach for it. Describing our exemplary implementation of such a journal transformation.Methods: Studying the respective literature as well as discussing this topic in various discussion groups and meetings (primarily of editors and publishers, but also of authors and readers), with long term experience as editors and /or publishers of scientific publications as prerequisite.Results: There is a clear will, particularly of political and funding organizations, towards open access publishing. In spite of this, there is still a large amount of scientific knowl edge, being communicated through subscription-based journals. For successfully transforming such journals into open access, sixteen criteria for a goal-oriented, stepwise, sustainable, and fair transformation are suggested. The Tandem Model as transformation approach is introduced. Our exemplary implementation is done in the Trans-O-MIM project. It is exploring strategies, models and evaluation metrics for journal transforma tion. As instance the journal Methods of Information in Medicine will apply the Tandem Model from 2017 onwards.Conclusions: Within Trans-O-MIM we will reach at least nine of the sixteen criteria for adequate transformation. It was positive to implement Trans-O-MIM as international research project. After first steps for transforming Methods have successfully been made, challenges will remain, among others, in identifying appropriate incentives for open access publishing in order to support its transformation.

scholarly journals РИЗИКИ ВПРОВАДЖЕННЯ ЕЛЕКТРОННИХ БІБЛІОМЕТРИЧНИХ СИСТЕМ ОЦІНЮВАННЯ ЕФЕКТИВНОСТІ ДІЯЛЬНОСТІ НАУКОВИХ ПРАЦІВНИКІВ

2015 ◽  
Vol 48 (4) ◽  
pp. 1
Author(s):  
Valeriy Yu. Bykov ◽  
Nataliia V. Soroko
Keyword(s):  
Objective Evaluation ◽  
Scientific Activity ◽  
Publication Activity ◽  
Google Scholar ◽  
Network Services ◽  
Electronic Systems ◽  
Scientific Publications ◽  
Scientometric Indicators ◽  
Personal Contribution

The article deals with the results of the analysis of international and domestic experience in the use of network services, which can independently evaluate the quality of electronic publications and scientists’ publication activity. It can be achieved by the analysis of the values of scientometric indicators included in the bibliometric open electronic systems. This approach is associated with certain risks of objective evaluation of researchers’ scientific activity efficiency. The conditions for the inclusion of scientific publications in the search systems like Google Scholar are considered. It is concluded that the scientometric base, which is today an international and widely used in practice, should be developed to provide a more adequate reflection of the character and level of scientists’ scientific activity, as well as their personal contribution to the development of certain areas of science.

Scientific Authorship and E-commons

2010 ◽  
pp. 193-205
Author(s):  
Luc Schneider
Keyword(s):  
Open Access ◽  
Open Source ◽  
Scientific Knowledge ◽  
Scientific Community ◽  
Scientific Literature ◽  
Source Model ◽  
Public Domain ◽  
Scientific Publications ◽  
Scientific Authorship ◽  
The Web

This contribution tries to assess how the Web is changing the ways in which scientific knowledge is produced, distributed and evaluated, in particular how it is transforming the conventional conception of scientific authorship. After having properly introduced the notions of copyright, public domain and (e-)commons, I will critically assess James Boyle's (2003, 2008) thesis that copyright and scientific (e-) commons are antagonistic, but I will mostly agree with the related claim by Stevan Harnad (2001a,b, 2008) that copyright has become an obstacle to the accessibility of scientific works. I will even go further and argue that Open Access schemes not only solve the problem of the availability of scientific literature, but may also help to tackle the uncontrolled multiplication of scientific publications, since these publishing schemes are based on free public licenses allowing for (acknowledged) re-use of texts. However, the scientific community does not seem to be prepared yet to move towards an Open Source model of authorship, probably due to concerns related to attributing credit and responsability for the expressed hypotheses and results. Some strategies and tools that may encourage a change of academic mentality in favour of a conception of scientific authorship modelled on the Open Source paradigm are discussed.

Is grey literature really grey or a hidden glory to showcase the sleeping beauty

2020 ◽  
Vol ahead-of-print (ahead-of-print) ◽  
Author(s):  
Sumeer Gul ◽  
Tariq Ahmad Shah ◽  
Suhail Ahmad ◽  
Farzana Gulzar ◽  
Taseen Shabir
Keyword(s):  
Open Access ◽  
Web Of Science ◽  
Grey Literature ◽  
Sleeping Beauty ◽  
Developmental Perspective ◽  
Google Scholar ◽  
Content Type ◽  
Metadata Standards ◽  
Theses And Dissertations ◽  
Sciverse Scopus

Purpose The study aims to showcase the developmental perspective of “grey literature” and its importance to different sectors of the society. Furthermore, issues, challenges and possibilities concerned with the existence of “grey literature” have also been discoursed. Design/methodology/approach The study is based on the existing literature published in the field of “grey literature” which was identified with the aid of three leading indexing and abstracting services, Web of Science, SciVerse Scopus, and Google Scholar. Keywords like grey literature, black literature, The Grey Journal, The International Journal on Grey Literature, International Conference on Grey Literature, non-conventional literature, semi-published literature, System for Information on Grey Literature in Europe (SIGLE), European Association for the Exploitation of Grey Literature (EAGLE), white literature, white papers, theses and dissertations, GreyNet, grey literature-electronic media, Grey market, open access, OpenNet, open access repositories, institutional repositories, open archives, electronic theses and dissertations, institutional libraries, scholarly communication, access to knowledge, metadata standards for grey literature, metadata heterogeneity, disciplinary grey literature, etc. were searched in the select databases. Simple as well as advanced search feature of the databases were made use of. Moreover, for more recent and updated information on the topic, the “citing articles” feature of the databases was also used. The “citing articles” were consulted on the basis of their relevance with the subject content. Findings The study helps to understand the definitive framework and developmental perspective of “grey literature”. “Grey Literature” has emerged as a promising content for enhancing the visibility of the ideas that were earlier unexplored and least made use of “Grey literature” has also overcome the problems and issues with its existence and adoption. Technology has played a catalytic role in eradicating the issues and problems pertinent to the “grey literature” to a greater extent. Research limitations/implications The study is based on the published literature that is indexed by only three databases, i.e. Web of Science, SciVerse Scopus and Google Scholar. Furthermore, some limited aspects of “grey literature” have been covered. Practical implications The study will be of great help to various stakeholders and policymakers to showcase the value and importance of “grey literature” for better access and exploitation. It will also be of importance to those interested to know how the literature tagged as grey changed with the passing time and how it through its unseen characteristics has evolved as an important source of information at par with the “white literature”. Originality/value The study tries to provide a demarcated and segregated outlook of the “grey literature”. It also focuses on various issues, problems and possibilities pertinent to the adoption and existence of “grey literature”.

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