scholarly journals Identification and genetic diversity of Spodoptera frugiperda in Lampung Province, Indonesia

2020 ◽  
Vol 21 (4) ◽  
Author(s):  
Puji Lestari ◽  
ADRIYANA BUDIARTI ◽  
Yuyun Fitriana ◽  
FX. SUSILO ◽  
I GEDE SWIBAWA ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Sequence Analysis ◽  
Spodoptera Frugiperda ◽  
Insect Pest ◽  
Morphological Characters ◽  
Molecular Techniques ◽  
Coi Gene ◽  
Plant Damage ◽  
Foreign Countries ◽  
The Absolute

Abstract. Lestari P, Budiarti A, Fitriana Y, Susilo FX, Swibawa IG, Sudarsono H, Suharjo R, Hariri AM, Purnomo, Nuryasin, Solikhin, Wibowo L, Jumari, Hartaman M. 2020. Identification and genetic diversity of Spodoptera frugiperda in Lampung Province, Indonesia. Biodiversitas 21: 1670-1677. Spodoptera frugiperda is one of the most recent invasive and destructive insect pest in Indonesia. Recently, it has been reported that this pest was found in some cornfield areas in Sumatera, including Lampung. This research was performed to confirm the presence of S. frugiperda in Lampung Province by collecting and identifying larvae of Spodoptera found in the field as well as investigation on the genetic diversity of the established populations and to observe the damage caused by this pest on cornfields in the Lampung Province. The observation was conducted from February-April 2019 at four locations (districts) representing corn-producing areas in Lampung, namely Lampung Selatan, Lampung Timur, Pesawaran and Pringsewu, each location comprising five plots. The plot is a cornfield with plants aged 14-40 days after planting. Twenty plants were randomly chosen in every plot as plant samples to collect the Spodoptera larvae and to calculate the absolute plant damage caused by the larvae. The absolute plant damage was analyzed by dividing the attacked plants with total plants observed and multiply by 100%. Identification of the Spodoptera larvae was performed based on morphological characters and molecular techniques using sequence analysis of Cytochrome c Oxidase subunit I (COI) gene. The result confirmed that the larvae found in the cornfield in Lampung were S. frugiperda. There was no nucleotides variation in the sequence of COI gene among S. frugiperda found in Lampung Province (Lampung Selatan, Lampung Timur, Pesawaran and Pringsewu) as well as S. frugiperda that was found in corn from foreign countries. The absolute plant damage caused by this pest in the four districts of Lampung was in the range of 26.50-70%.

COI gene sequence analysis for testing cyclical mating in securing genetic diversity of Macrobrachium rosenbergii

2015 ◽  
Vol 62 ◽  
pp. 178-185 ◽  
Author(s):  
Mohamed Omer Elsheikh ◽  
Firuza Begham Mustafa ◽  
Ihlam Ibrahim Eid ◽  
Ayucera Lutas ◽  
Subha Bhassu
Keyword(s):  
Genetic Diversity ◽  
Sequence Analysis ◽  
Gene Sequence ◽  
Macrobrachium Rosenbergii ◽  
Coi Gene ◽  
Gene Sequence Analysis

scholarly journals Molecular techniques in the assessment of genetic relationships between populations of Consolida (Ranunculaceae)

Caryologia ◽  
2021 ◽  
Vol 74 (2) ◽  
pp. 149-161
Author(s):  
Jing Ma ◽  
Wenyan Fan ◽  
Shujun Jiang ◽  
Xiling Yang ◽  
Wenshuai Li ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Relationships ◽  
Random Amplified Polymorphic Dna ◽  
Principal Component ◽  
Morphological Characters ◽  
Mantel Test ◽  
Molecular Techniques ◽  
Group Method ◽  
Plant Resources ◽  
High Genetic Diversity

Genetic diversity studies are essential to understand the conservation and management of plant resources in any environment. The genus Consolida (DC.) Gray (Ranuculaceae) belongs to tribe Delphinieae. It comprises approximately 52 species, including the members of the genus Aconitella Spach. No detailed Random Amplified Polymorphic DNA (RAPD) studies were conducted to study Consolida genetic diversity. Therefore, we collected and analyzed 19 species from 12 provinces of regions. Overall, one hundred and twenty-seven plant specimens were collected. We showed significant differences in quantitative morphological characters in plant species. Unweighted pair group method with arithmetic mean and principal component analysis (PCA) divided Consolida species into two groups. All primers produced polymorphic amplicons though the extent of polymorphism varied with each primer. The primer OPA-06 was found to be most powerful and efficient as it generated a total of 24 bands of which 24 were polymorphic. The Mantel test showed correlation (r = 0.34, p=0.0002) between genetic and geographical distances. We reported high genetic diversity, which clearly shows the Consolida species can adapt to changing environments since high genetic diversity is linked to species adaptability. Present results highlighted the utility of RAPD markers and morphometry methods to investigate genetic diversity in Consolida species. Our aims were 1) to assess genetic diversity among Consolida species 2) is there a correlation between species genetic and geographical distance? 3) Genetic structure of populations and taxa.

scholarly journals Molecular Identity of Subterranean Termites

2020 ◽  
Vol 8 (4) ◽  
pp. 410-416
Author(s):  
Srinivasa Murthy Kotilingam
Keyword(s):  
Sequence Analysis ◽  
Life Stage ◽  
Morphological Characters ◽  
Caste System ◽  
Coi Gene ◽  
Subterranean Termites ◽  
Morphological Identification ◽  
Sequence Information ◽  
Molecular Sequence ◽  
Morphological Differences

Identification of termites is a challenging task due to variable morphological differences among species and their eusocial behaviour with different caste system. A method for easy and accurate species-level identification at any life stage is required. In this study, a 658-base pair region of the mitochondrial cytochrome oxidase I (COI) gene was used to explore its utility in the identification of important subterranean termites. Termite specimens collected from 25 locations from various states, were characterized using specific primers for their identification. Sequence analysis and divergence among the species was assessed. The composition of the mitochondrial sequence of the COI gene in the present study was expectedly AT biased. GenBank accession numbers were obtained for the species. Sequence analysis and divergence among the species was assessed, which revealed significantly high percentage of A+T base composition. Molecular sequence information from NCBI revealed relatedness in all the collected termites, accurately as revealed by their morphological characters. The studies indicate the relevance of DNA sequencing to match different forms of termites and address ambiguities in morphological identification. The information on species diversity would help plan strategies for management of termites. Int. J. Appl. Sci. Biotechnol. Vol 8(4): 410-416

scholarly journals A comparative analysis of genetic diversity in Portuguese grape germplasm from ampelographic collections fit for quality wine production

2016 ◽  
Vol 14 (4) ◽  
pp. e0712 ◽  
Author(s):  
Isaura Castro ◽  
Olinda Pinto-Carnide ◽  
Jesús M. Ortiz ◽  
Vanessa Ferreira ◽  
Juan P. Martín
Keyword(s):  
Genetic Diversity ◽  
Random Amplified Polymorphic Dna ◽  
Morphological Characters ◽  
Inter Simple Sequence Repeat ◽  
Issr Markers ◽  
Molecular Techniques ◽  
Wine Production ◽  
Rapd And Issr ◽  
Simple Sequence

Grapevine cultivars diversity is vast and full of synonyms and homonyms. Up to few decades ago characterization of grapevine was based on morphological characters. In the last decades, molecular markers were developed and have been used as tools to study genetic diversity in a range of different plant species. Fifty-six Portuguese accessions representative of ‘Vinhos Verdes’ and ‘Douro’ Controlled Designations of Origin (DOC) were analysed through DNA fingerprints generated by Random Amplified Polymorphic DNA (RAPD) and Inter Simple Sequence Repeat (ISSR). The study aimed to compare the effectiveness of RAPD and ISSR molecular techniques in the detection of synonyms, homonyms and misnames. RAPD and ISSR analysis enabled the detection of 36 different band patterns, reducing in about 36% the initial material. Several accessions grown under different names, between and within collections, were confirmed as the same genotype, namely Gouveio/Verdelho, Sousão Douro/Vinhão and Arinto Oeste/Pedernã. Similarly, some homonyms/misnames were also identified, namely within Azal Tinto and Rabigato accessions. RAPD and ISSR markers revealed to be adequate molecular techniques for grapevine varieties fingerprinting with advantages over other molecular procedures, contributing for a good management of grapevine collections.

Study of genetic diversity in wild raspberry (Rubus idaeus L.) germplasm collection using morphological characters and RAPD markers

Biologija ◽  
2008 ◽  
Vol 54 (2) ◽  
pp. 66-74 ◽  
Author(s):  
Jolanta Patamsytė ◽  
Donatas Žvingila ◽  
Juozas Labokas ◽  
Virgilijus Baliuckas ◽  
Laimutė Balčiūnienė ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Rapd Markers ◽  
Germplasm Collection ◽  
Morphological Characters ◽  
Rubus Idaeus

scholarly journals Effectiveness of Push–Pull Systems to Fall Armyworm (Spodoptera frugiperda) Management in Maize Crops in Morelos, Mexico

Insects ◽  
2021 ◽  
Vol 12 (4) ◽  
pp. 298
Author(s):  
Ouorou Ganni Mariel Guera ◽  
Federico Castrejón-Ayala ◽  
Norma Robledo ◽  
Alfredo Jiménez-Pérez ◽  
Georgina Sánchez-Rivera ◽  
...  
Keyword(s):  
Spodoptera Frugiperda ◽  
Insect Pest ◽  
Fall Armyworm ◽  
Maize Yield ◽  
Morphological Development ◽  
Main Method ◽  
Development Of Resistance ◽  
Pull Systems ◽  
Complex Scenario ◽  
Block Experiment

Chemical control is the main method used to combat fall armyworm in maize crops. However, its indiscriminate use usually leads to a more complex scenario characterized by loss of its effectiveness due to the development of resistance of the insect pest, emergence of secondary pests, and reduction of the populations of natural enemies. For this reason, efforts to develop strategies for agroecological pest management such as Push–Pull are increasingly growing. In this context, the present study was carried out to evaluate field effectiveness of Push–Pull systems for S. frugiperda management in maize crops in Morelos, Mexico. In a randomized block experiment, the incidence and severity of S. frugiperda, the development and yield of maize were evaluated in nine Push–Pull systems and a maize monoculture. The Push–Pull systems presented incidence/severity values lower than those of the monoculture. Morphological development and maize yield in the latter were lower than those of most Push–Pull systems. Mombasa—D. ambrosioides, Mulato II—T. erecta, Mulato II—C. juncea, Tanzania—T. erecta and Tanzania—D. ambrosioides systems presented higher yields than those of monocultures.

scholarly journals Investigating the Parasitoid Community Associated with the Invasive Mealybug Phenacoccus solenopsis in Southern China

Insects ◽  
2021 ◽  
Vol 12 (4) ◽  
pp. 290
Author(s):  
Hua-Yan Chen ◽  
Hong-Liang Li ◽  
Hong Pang ◽  
Chao-Dong Zhu ◽  
Yan-Zhou Zhang
Keyword(s):  
Biological Control ◽  
Species Delimitation ◽  
Southern China ◽  
Insect Pest ◽  
Integrated Approach ◽  
Molecular Data ◽  
Coi Gene ◽  
Morphological Examination ◽  
Accurate Identification ◽  
Phenacoccus Solenopsis

The cotton mealybug Phenacoccus solenopsis Tinsley (Hemiptera: Pseudococcidae), is an emerging invasive insect pest in China. Hymenopteran parasitoids are the key organisms for suppressing populations of P. solenopsis in the field, and therefore could be used as biological agents. Accurate identification of the associated parasitoids is the critical step to assess their potential role in biological control. In this study, we facilitated the identification of the parasitoid composition of P. solenopsis using an integrated approach of species delimitation, combining morphology with molecular data. Eighteen Hymenoptera parasitoid species belonging to 11 genera of four families are recognized based on morphological examination and molecular species delimitation of the mitochondrial cytochrome c oxidase 1 (COI) gene and the 28S rDNA using the automatic barcode gap discovery (ABGD) and the Bayesian Poisson tree processes model (bPTP). Among these species, eight species are primary parasitoids with Aenasius arizonensis (Girault) (Hymenoptera: Encyrtidae) being the dominant taxon, while the other 10 species are probably hyperparasitoids, with a prevalence of Cheiloneurus nankingensis Li & Xu (Hymenoptera: Encyrtidae). These results indicate that parasitoid wasps associated with P. solenopsis from China are diverse and the integrated taxonomic approach applied in this study could enhance the accurate identification of these parasitoids that should be assessed in future biological control programs.

scholarly journals Phylogeography of the Brittle Star Ophiura sarsii Lütken, 1855 (Echinodermata: Ophiuroidea) from the Barents Sea and East Atlantic

Diversity ◽  
2021 ◽  
Vol 13 (2) ◽  
pp. 40
Author(s):  
Evgeny Genelt-Yanovskiy ◽  
Yixuan Li ◽  
Ekaterina Stratanenko ◽  
Natalia Zhuravleva ◽  
Natalia Strelkova ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Barents Sea ◽  
Haplotype Diversity ◽  
Brittle Star ◽  
The Arctic ◽  
Coi Gene ◽  
High Genetic Diversity ◽  
Svalbard Archipelago ◽  
Mitochondrial Coi ◽  
The Barents Sea

Ophiura sarsii is a common brittle star species across the Arctic and Sub-Arctic regions of the Atlantic and the Pacific oceans. Ophiurasarsii is among the dominant echinoderms in the Barents Sea. We studied the genetic diversity of O.sarsii by sequencing the 548 bp fragment of the mitochondrial COI gene. Ophiurasarsii demonstrated high genetic diversity in the Barents Sea. Both major Atlantic mtDNA lineages were present in the Barents Sea and were evenly distributed between the northern waters around Svalbard archipelago and the southern part near Murmansk coast of Kola Peninsula. Both regions, and other parts of the O.sarsii range, were characterized by high haplotype diversity with a significant number of private haplotypes being mostly satellites to the two dominant haplotypes, each belonging to a different mtDNA clade. Demographic analyses indicated that the demographic and spatial expansion of O.sarsii in the Barents Sea most plausibly has started in the Bølling–Allerød interstadial during the deglaciation of the western margin of the Barents Sea.

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