scholarly journals Label-free classification of cells based on supervised machine learning of subcellular structures

PLoS ONE ◽  
2019 ◽  
Vol 14 (1) ◽  
pp. e0211347 ◽  
Author(s):  
Yusuke Ozaki ◽  
Hidenao Yamada ◽  
Hirotoshi Kikuchi ◽  
Amane Hirotsu ◽  
Tomohiro Murakami ◽  
...  
2021 ◽  
pp. 1-1
Author(s):  
Mohammadrahim Kazemzadeh ◽  
Colin L. Hisey ◽  
Priscila Dauros-Singorenko ◽  
Simon Swift ◽  
Kamran Zargar-Shoshtari ◽  
...  

PLoS ONE ◽  
2021 ◽  
Vol 16 (4) ◽  
pp. e0249196
Author(s):  
Luke Sheneman ◽  
Gregory Stephanopoulos ◽  
Andreas E. Vasdekis

We report the application of supervised machine learning to the automated classification of lipid droplets in label-free, quantitative-phase images. By comparing various machine learning methods commonly used in biomedical imaging and remote sensing, we found convolutional neural networks to outperform others, both quantitatively and qualitatively. We describe our imaging approach, all implemented machine learning methods, and their performance with respect to computational efficiency, required training resources, and relative method performance measured across multiple metrics. Overall, our results indicate that quantitative-phase imaging coupled to machine learning enables accurate lipid droplet classification in single living cells. As such, the present paradigm presents an excellent alternative of the more common fluorescent and Raman imaging modalities by enabling label-free, ultra-low phototoxicity, and deeper insight into the thermodynamics of metabolism of single cells.


2018 ◽  
Vol 11 (4) ◽  
pp. e201700244 ◽  
Author(s):  
Lana Woolford ◽  
Mingzhou Chen ◽  
Kishan Dholakia ◽  
C. Simon Herrington

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