Theoretical Insights into the Role of Water Molecule in The Aqueous/Cu(111) Interface during Corrosion Pathway

The absorption and possible reaction paths during corrosion have been systematically identified at the molecular level by us-ing density functional theory calculations. The results show that the co-adsorbed water molecule has a two-fold impact on the corrosive kinetics process. The one is the solvation effect, where water molecule affects the various reactions through ion dipole interaction, without bond fracture and formation. Another is the H-transfer mediator, where the bond of co-adsorbed water molecule breaks and regenerates in order to transfer hydrogen atoms.

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Role of Chemistry and Crystal Structure on the Electronic Defect States in Cs-Based Halide Perovskites

Materials ◽

10.3390/ma14041032 ◽

2021 ◽

Vol 14 (4) ◽

pp. 1032

Author(s):

Anirban Naskar ◽

Rabi Khanal ◽

Samrat Choudhury

Keyword(s):

Crystal Structure ◽

Density Functional ◽

Covalent Bond ◽

Density Functional Theory Calculations ◽

Antisite Defect ◽

Defect States ◽

Functional Theory ◽

Electronic Defect ◽

Constituent Elements

The electronic structure of a series perovskites ABX3 (A = Cs; B = Ca, Sr, and Ba; X = F, Cl, Br, and I) in the presence and absence of antisite defect XB were systematically investigated based on density-functional-theory calculations. Both cubic and orthorhombic perovskites were considered. It was observed that for certain perovskite compositions and crystal structure, presence of antisite point defect leads to the formation of electronic defect state(s) within the band gap. We showed that both the type of electronic defect states and their individual energy level location within the bandgap can be predicted based on easily available intrinsic properties of the constituent elements, such as the bond-dissociation energy of the B–X and X–X bond, the X–X covalent bond length, and the atomic size of halide (X) as well as structural characteristic such as B–X–B bond angle. Overall, this work provides a science-based generic principle to design the electronic states within the band structure in Cs-based perovskites in presence of point defects such as antisite defect.

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Density functional theory study of the role of benzylic hydrogen atoms in the antioxidant properties of lignans

Scientific Reports ◽

10.1038/s41598-018-30860-5 ◽

2018 ◽

Vol 8 (1) ◽

Cited By ~ 31

Author(s):

Quan V. Vo ◽

Pham Cam Nam ◽

Mai Van Bay ◽

Nguyen Minh Thong ◽

Nguyen Duc Cuong ◽

...

Keyword(s):

Density Functional Theory ◽

Density Functional ◽

Antioxidant Properties ◽

Density Functional Theory Study ◽

Hydrogen Atoms ◽

Functional Theory

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Computational Evidence Suggests That 1-chloroethanol May Be an Intermediate in the Thermal Decomposition of 2-chloroethanol into Acetaldehyde and HCl

10.26434/chemrxiv.7608857.v1 ◽

2019 ◽

Author(s):

Zoi Salta ◽

Agnie M. Kosmas ◽

Oscar Ventura ◽

Vincenzo Barone

Keyword(s):

Aqueous Solution ◽

Water Molecule ◽

Gas Phase ◽

Density Functional ◽

Water Molecules ◽

Functional Theory ◽

Direct Transformation ◽

The Density Functional Theory ◽

Successive Step ◽

The One

The dehalogenation of 2-chloroethanol (2ClEtOH) in gas phase with and without participation of catalytic water molecules has been investigated using methods rooted into the density functional theory. The well-known HCl elimination leading to vinyl alcohol (VA) was compared to the alternative elimination route towards oxirane and shown to be kinetically and thermodynamically more favorable. However, the isomerization of VA to acetaldehyde in the gas phase, in the absence of water, was shown to be kinetically and thermodynamically less favorable than the recombination of VA and HCl to form the isomeric 1-chloroethanol (1ClEtOH) species. This species is more stable than 2ClEtOH by about 6 kcal mol-1, and the reaction barrier is 22 kcal mol-1 vs 55 kcal mol-1 for the direct transformation of VA to acetaldehyde. In a successive step, 1ClEtOH can decompose directly to acetaldehyde and HCl with a lower barrier (29 kcal mol-1) than that of VA to the same products (55 kcal mol-1). The calculations were repeated using a single ancillary water molecule (W) in the complexes 2ClEtOH_W and 1ClEtOH_W. The latter adduct is now more stable than 2ClEtOH_W by about 8 kcal mol-1, implying that the water molecule increased the already higher stability of 1ClEtOH in the gas phase. However, this catalytic water molecule lowers dramatically the barrier for the interconversion of VA to acetaldehyde (from 55 to 6 kcal mol-1). This barrier is now smaller than the one for the conversion to 1ClEtOH (which also decreases, but not so much, from 22 to 12 kcal mol-1). Thus, it is concluded that while 1ClEtOH may be a plausible intermediate in the gas phase dehalogenation of 2ClEtOH, it is unlikely that it plays a major role in water complexes (or, by inference, aqueous solution). It is also shown that neither in the gas phase nor in the cluster with one water molecule, the oxirane path is competitive with the VA alcohol path.

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DFT Studies of Graphene-Functionalised Derivatives of Capecitabine

Zeitschrift für Naturforschung A ◽

10.1515/zna-2017-0290 ◽

2017 ◽

Vol 72 (12) ◽

pp. 1131-1138 ◽

Cited By ~ 1

Author(s):

Mehdi Aramideh ◽

Mahmoud Mirzaei ◽

Ghadamali Khodarahmi ◽

Oğuz Gülseren

Keyword(s):

Density Functional ◽

Density Functional Theory Calculations ◽

Atomic Scale ◽

Phase System ◽

Molecular Models ◽

Functional Theory ◽

Atomic Properties ◽

Scale Properties ◽

Derivatives Of

AbstractCancer is one of the major problems for so many people around the world; therefore, dedicating efforts to explore efficient therapeutic methodologies is very important for researchers of life sciences. In this case, nanostructures are expected to be carriers of medicinal compounds for targeted drug design and delivery purposes. Within this work, the graphene (Gr)-functionalised derivatives of capecitabine (CAP), as a representative anticancer, have been studied based on density functional theory calculations. Two different sizes of Gr molecular models have been used for the functionalisation of CAP counterparts, CAP-Gr3 and CAP-Gr5, to explore the effects of Gr-functionalisation on the original properties of CAP. All singular and functionalised molecular models have been optimised and the molecular and atomic scale properties have been evaluated for the optimised structures. Higher formation favourability has been obtained for CAP-Gr5 in comparison with CAP-Gr3 and better structural stability has been obtained in the water-solvated system than the isolated gas-phase system for all models. The CAP-Gr5 model could play a better role of electron transferring in comparison with the CAP-Gr3 model. As a concluding remark, the molecular properties of CAP changed from singular to functionalised models whereas the atomic properties remained almost unchanged, which is expected for a carrier not to use significant perturbations to the original properties of the carried counterpart.

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Large H2O solubility in dense silica and its implications for the interiors of water-rich planets

Proceedings of the National Academy of Sciences ◽

10.1073/pnas.1917448117 ◽

2020 ◽

Vol 117 (18) ◽

pp. 9747-9754 ◽

Cited By ~ 2

Author(s):

Carole Nisr ◽

Huawei Chen ◽

Kurt Leinenweber ◽

Andrew Chizmeshya ◽

Vitali B. Prakapenka ◽

...

Keyword(s):

Density Functional ◽

High Pressures ◽

Density Functional Theory Calculations ◽

Mutual Solubility ◽

Hydrogen Atoms ◽

Functional Theory ◽

Geochemical Cycle ◽

High Pressures And Temperatures ◽

State Of Matter ◽

Formula Type

Sub-Neptunes are common among the discovered exoplanets. However, lack of knowledge on the state of matter in H2O-rich setting at high pressures and temperatures (P−T) places important limitations on our understanding of this planet type. We have conducted experiments for reactions between SiO2 and H2O as archetypal materials for rock and ice, respectively, at high P−T. We found anomalously expanded volumes of dense silica (up to 4%) recovered from hydrothermal synthesis above ∼24 GPa where the CaCl2-type (Ct) structure appears at lower pressures than in the anhydrous system. Infrared spectroscopy identified strong OH modes from the dense silica samples. Both previous experiments and our density functional theory calculations support up to 0.48 hydrogen atoms per formula unit of (Si1−xH4x)O2 (x=0.12). At pressures above 60 GPa, H2O further changes the structural behavior of silica, stabilizing a niccolite-type structure, which is unquenchable. From unit-cell volume and phase equilibrium considerations, we infer that the niccolite-type phase may contain H with an amount at least comparable with or higher than that of the Ct phase. Our results suggest that the phases containing both hydrogen and lithophile elements could be the dominant materials in the interiors of water-rich planets. Even for fully layered cases, the large mutual solubility could make the boundary between rock and ice layers fuzzy. Therefore, the physical properties of the new phases that we report here would be important for understanding dynamics, geochemical cycle, and dynamo generation in water-rich planets.

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The Role of SiH3 Diffusion in Determining the Surface Smoothness of Plasma-Deposited Amorphous Si Thin Films: An Atomic-Scale Analysis

MRS Proceedings ◽

10.1557/proc-862-a3.2 ◽

2005 ◽

Vol 862 ◽

Author(s):

Mayur S. Valipa ◽

Tamas Bakos ◽

Eray S. Aydil ◽

Dimitrios Maroudas

Keyword(s):

Thin Films ◽

Density Functional ◽

Activation Barrier ◽

Density Functional Theory Calculations ◽

Atomic Scale ◽

Functional Theory ◽

Weak Adsorption ◽

Dynamics Simulations ◽

Hydrogenated Amorphous

AbstractDevice-quality hydrogenated amorphous silicon (a-Si:H) thin films grown under conditions where the SiH3 radical is the dominant deposition precursor are remarkably smooth, as the SiH3 radical is very mobile and fills surface valleys during its diffusion on the a-Si:H surface. In this paper, we analyze atomic-scale mechanisms of SiH3 diffusion on a-Si:H surfaces based on molecular-dynamics simulations of SiH3 radical impingement on surfaces of a-Si:H films. The computed average activation barrier for radical diffusion on a-Si:H is 0.16 eV. This low barrier is due to the weak adsorption of the radical onto the a-Si:H surface and its migration predominantly through overcoordination defects; this is consistent with our density functional theory calculations on crystalline Si surfaces. The diffusing SiH3 radical incorporates preferentially into valleys on the a-Si:H surface when it transfers an H atom and forms a Si-Si backbond, even in the absence of dangling bonds.

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Density Functional Theory Calculations of the Radical Scavenging Activity of Alkannin Derivatives

Applied Mechanics and Materials ◽

10.4028/www.scientific.net/amm.189.225 ◽

2012 ◽

Vol 189 ◽

pp. 225-231

Author(s):

Xiang Peng Guo ◽

Rui Fa Jin

Keyword(s):

Density Functional ◽

Radical Scavenging Activity ◽

Radical Scavenging ◽

Density Functional Theory Calculations ◽

Hydrogen Atom Transfer ◽

Scavenging Activity ◽

Functional Theory ◽

Hydrogen Bond Formation ◽

Structural And Electronic Properties ◽

The One

The structural and electronic properties of alkannin and its derivatives and their radicals were investigated at density functional level. It turned out that the presence of the dihydroxy functionality increases the radical stability through hydrogen bond formation. The hydrogen atom transfer for alkannin derivatives is difficult to occur compared with zero compound phenol. However, alkannin derivatives appear to be good candidates for the one-electron-transfer, particularly for alkannin derivatives with –OCOCH=CH(CH3)2 and –OCOCH2CH(CH3)2 groups. It suggests that 1–7 are expected to be the promising candidates for radical scavenging activity compounds because The ionization potential (IP) values of 1–7 are lower than that of the zero compound phenol.

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Classical Polarizable Force Field to Study Hydrated Hectorite: Optimization on DFT Calculations and Validation against XRD Data

Minerals ◽

10.3390/min8050205 ◽

2018 ◽

Vol 8 (5) ◽

pp. 205 ◽

Cited By ~ 3

Author(s):

Ragnhild Hånde ◽

Vivien Ramothe ◽

Stéphane Tesson ◽

Baptiste Dazas ◽

Eric Ferrage ◽

...

Keyword(s):

Force Field ◽

Density Functional ◽

Density Functional Theory Calculations ◽

X Ray Diffraction ◽

Electronic Density ◽

Functional Theory ◽

Polarizable Force Field ◽

Xrd Patterns ◽

The One ◽

Dynamics Simulations

Following our previous works on dioctahedral clays, we extend the classical Polarizable Ion Model (PIM) to trioctahedral clays, by considering dry Na-, Cs-, Ca- and Sr-hectorites as well as hydrated Na-hectorite. The parameters of the force field are determined by optimizing the atomic forces and dipoles on density functional theory calculations. The simulation results are validated by comparison with experimental X-ray diffraction (XRD) data. The XRD patterns calculated from classical molecular dynamics simulations performed with the PIM force field are in very good agreement with experimental results. In the bihydrated state, the less structured electronic density profile obtained with PIM compared to the one from the state-of-the-art non-polarizable force field clayFF explains the slightly better agreement between the PIM results and experiments.

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