scholarly journals Phospholipid Fatty Acid (PLFA) Analysis of Rhizosphere Bacterial Communities in a Peat Soil

2002 ◽  
Vol 51 (1-2) ◽  
pp. 123-128 ◽  
Author(s):  
András Halbritter ◽  
T. Mogyoróssy

To analyze the rhizosphere bacterial communities in wetlands, the total lipid content was extracted from a peat soil and 4 abundant wetland plant roots ( Typha angustifolia L., Salix cinerea L., Carex pseudocyperus L., Thelypteris palustris Salisb.). The separated phospholipid fraction was further fractionated and deriva­tized prior to gas chromatography-mass spectrometry (GC-MS) measurement. In the evaluation only the bacteria-specific fatty acids were used in order to neglect fatty acid information derived from plant root cells. Based on these analyses, a high level bacterial concentration was demonstrated in the rhizosphere, and the relative occurrence of aerobe and anaerobe, Gram positive and negative bacteria, methanotrophs, sulphate reducers and Actinobacteria was determined. Through the PLFA analysis the study of bacteria regardless of culturability was possible.

Author(s):  
Natascha Lewe ◽  
Syrie Hermans ◽  
Gavin Lear ◽  
Laura T. Kelly ◽  
Georgia Thomson-Laing ◽  
...  

2017 ◽  
Vol 71 (1-2) ◽  
pp. 91-98 ◽  
Author(s):  
Sławomira Drzymała-Czyż ◽  
Mariusz Szczepanik ◽  
Patrycja Krzyżanowska ◽  
Monika Duś-Żuchowska ◽  
Andrzej Pogorzelski ◽  
...  

Background/Aims: Cystic fibrosis (CF) liver disease is the third most frequent cause of death in CF patients. Although it alters fatty acid (FA) metabolism, data concerning the profile of FA in CF patients with liver cirrhosis is lacking. This study aimed to assess the FA composition of serum phospholipids in CF patients with and without liver cirrhosis. Methods: The study comprised 25 CF patients with liver cirrhosis and 25 without it. We assessed Z-scores for body height and weight, lung function, exocrine pancreatic sufficiency and colonization with Pseudomonas aeruginosa. FAs' profile of serum glycerophospholipids was quantified by gas chromatography mass spectrometry. Results: In CF patients with liver cirrhosis, the levels of C16:0 were higher and the amounts of C20:2n-6, C20:3n-6, C20:4n-6, and all the n-3 polyunsaturated FAs (PUFAs) (C18:3n-3, C20:5n-3, C22:5n-3, C22:6n-3) were lower than those in CF subjects without liver cirrhosis. The n-6/n-3, C20:4n-6/C18:2n-6, total n-6/C18:2n-6, C20:5n-3/C18:3n-3 and total n-3/C18:3n-3 ratios did not differ between the 2 groups. Conclusions: Liver cirrhosis may associate with profound abnormalities in the composition of serum glycerophospholipids FAs in CF patients. None of the analyzed clinical factors could explain the greater prevalence of low levels of PUFAs in this CF subgroup.


2001 ◽  
Vol 67 (10) ◽  
pp. 4796-4804 ◽  
Author(s):  
Maria Alexandrino ◽  
Claudia Knief ◽  
André Lipski

ABSTRACT Deuterated styrene ([2H8]styrene) was used as a tracer in combination with phospholipid fatty acid (PLFA) analysis for characterization of styrene-degrading microbial populations of biofilters used for treatment of waste gases. Deuterated fatty acids were detected and quantified by gas chromatography-mass spectrometry. The method was evaluated with pure cultures of styrene-degrading bacteria and defined mixed cultures of styrene degraders and non-styrene-degrading organisms. Incubation of styrene degraders for 3 days with [2H8]styrene led to fatty acids consisting of up to 90% deuterated molecules. Mixed-culture experiments showed that specific labeling of styrene-degrading strains and only weak labeling of fatty acids of non-styrene-degrading organisms occurred after incubation with [2H8]styrene for up to 7 days. Analysis of actively degrading filter material from an experimental biofilter and a full-scale biofilter by this method showed that there were differences in the patterns of labeled fatty acids. For the experimental biofilter the fatty acids with largest amounts of labeled molecules were palmitic acid (16:0), 9,10-methylenehexadecanoic acid (17:0 cyclo9-10), and vaccenic acid (18:1 cis11). These lipid markers indicated that styrene was degraded by organisms with aPseudomonas-like fatty acid profile. In contrast, the most intensively labeled fatty acids of the full-scale biofilter sample were palmitic acid and cis-11-hexadecenoic acid (16:1cis11), indicating that an unknown styrene-degrading taxon was present. Iso-, anteiso-, and 10-methyl-branched fatty acids showed no or weak labeling. Therefore, we found no indication that styrene was degraded by organisms with methyl-branched fatty fatty acids, such as Xanthomonas, Bacillus,Streptomyces, or Gordonia spp.


2018 ◽  
Vol 15 (7) ◽  
pp. 424 ◽  
Author(s):  
Cristina Truzzi ◽  
Anna Annibaldi ◽  
Matteo Antonucci ◽  
Giuseppe Scarponi ◽  
Silvia Illuminati

Environmental contextGlobal warming is an important problem for life on Earth, and there is an increasing need to understand how organisms respond to rising temperatures. We show that an Antarctic fish, the emerald rockcod, can acclimate to thermal shock by modifying the fatty acid composition and total lipid content in its gills. This study contributes to our understanding of how the physiology of Antarctic life could be influenced by climate change. AbstractAs a result of rising temperatures in the Antarctic seawater, there is an increasing interest to investigate the capacities for inducing a temperature acclimation response in Antarctic organisms. We analysed the effect of a thermal shock on the fatty acid (FA) composition of gills of the Antarctic notothenioid Trematomus bernacchii. To perform the quantification of fatty acids in gills, we applied an analytical method based on a fast microwave-assisted extraction (MAE) of lipids from a lyophilised sample, a base-catalysed trans-esterification of lipid extract to obtain fatty acid methyl esters (FAMEs), and their separation and identification by gas chromatography–mass spectrometry. The percentage of lipids extracted with MAE preceded by sample lyophilisation, 0.6 ± 0.3 % ww (wet weight), was consistent with the lipids obtained by the official Bligh and Dyer method, 0.8 ± 0.3 % ww. These data are among the first ever published for T. bernacchii. Specimens, caught in Terra Nova Bay (Ross Sea), were held in different tanks at 0, +1 and +2 °C, for 1, 5 and 10 days. In general, thermal shock produced an alteration in total lipid content, an increase in the percentage of saturated FAs, a decrease in mono-unsaturated FAs, and a variable response of poly-unsaturated FAs (an increase in specimens exposed to 0 and +1 °C, a decrease in those exposed to +2 °C). A chemometric approach based on principal component analysis indicated that temperature and exposure time influenced the composition of FAs in the gills, probably through an alteration of the metabolic pathways of FAs. This is the first study ever published on the FA composition of total lipids in gills of T. bernacchii exposed to high temperatures. This study demonstrates that T. bernacchii is capable of rapidly acclimating to a thermal shock, and contributes to increasing the knowledge on the effect of temperature on Antarctic notothenioids.


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