scholarly journals Genetic and QTL Analysis for Hilum-Eye Types in Cowpea (Vigna Unguiculata L. Walp)

2022 ◽  
Author(s):  
Brijesh Angira ◽  
Yang Zhang ◽  
Hong-Bin Zhang ◽  
Meiping Zhang ◽  
B.B. Singh ◽  
...  
Keyword(s):  
Seed Size ◽  
Seed Coat ◽  
Complete Agreement ◽  
Seed Color ◽  
Gene Model ◽  
Complex Interactions ◽  
Number Of Genes ◽  
Different Types ◽  
Type Pattern ◽  
Cowpea Seed

Abstract Cowpea is an important food legume widely grown in the semi-arid tropics and serves as a main source of dietary protein, minerals, and vitamins. However, varieties differ from region to region based on the consumer’s preference for seed types determined by seed size, seed coat texture, seed color, and hilum-eye types. The genetics of seed size, seed color, and seed coat texture have been well documented, but the hilum-eye types have not been studied well because they represent seven different types with complex interactions. We studied the genetic segregation for hilum-eye types and determined the number of genes involved in a recombinant inbred line (RIL) population derived from a cross between a small eye parent ‘GEC’ and a Watson eye parent ‘IT98K-476-8’. The results demonstrated a three-gene model, W (Watson), S (small), and R (large), for cowpea seed hilum-eye type pattern and the interaction of these three genes, W, S, and R, resulted in five phenotypes, viz. self, Watson, small, large, and ring hilum-eye types. Moreover, we also mapped the RILs for hilum-eye types, identified three quantitative trait loci (QTLs), and aligned to the cowpea reference genome as QTL qHilum7.1, qHilum9.1, and qHilum10.1, corresponding to these three genes, Ring type (R), Watson type (W), and Small type (S) hilum-eye type patterns, respectively. Therefore, there was a complete agreement between the genetic analysis and QTL mapping for the number of genes controlling the hilum types in cowpea.

scholarly journals A New Genotype for White Seed Coat Discovered in `Early Wax' Snap Bean

1991 ◽  
Vol 116 (1) ◽  
pp. 131-136 ◽  
Author(s):  
Mark J. Bassett ◽  
Arie Blom
Keyword(s):  
Seed Coat ◽  
Supporting Evidence ◽  
Seed Color ◽  
Breeding Line ◽  
Gene Model ◽  
Snap Bean ◽  
New Genotype ◽  
Recessive Genes ◽  
Progeny Tests ◽  
New Hypothesis

The white-seeded snap bean `Early Wax' (Phaseolus vulgaris L.) was crossed with a black-seeded breeding line 5-593. The F2 segregation data are consistent with a three-gene model, in which all three genes must be homozygous recessive to give white seed coat. One of the genes is t because of segregation in F2 for plants with white flowers and partial seed coat coloration. We hypothesize that the genes ers and ers2 in the presence of f block all seed color expression in all genes for partial coloration of seed. The hypothesis of three recessive genes was confirmed in a backcross test involving `Early Wax' x F1. The interaction of ers and ers2 was tested in progeny tests of partly colored BC-F1 plants. One of the erasure genes, ers2, blocks color expression in color zones close to the hilum, but only in the presence of ers. The other erasure gene, ers, blocks color expression only in color zones beyond those close to the hilum in a manner similar to the restr locus of Prakken (1972). The old hypothesis that partly colored seed phenotypes require the presence of a second factor e in addition to t, where the function of e is vague and unspecified, should be discarded for lack of supporting evidence, Under the new hypothesis, soldier series phenotypes (e.g., bipunctata, arcus, virgata, and virgarcus) may express in t ers Ers2 by action of ers or in t Ers Ers2 by action of various genes for partly colored seeds other than ers.

scholarly journals Biophysics and Modeling of Mechanotransduction in Neurons: A Review

Mathematics ◽  
2021 ◽  
Vol 9 (4) ◽  
pp. 323
Author(s):  
Martina Nicoletti ◽  
Letizia Chiodo ◽  
Alessandro Loppini
Keyword(s):  
Ion Channels ◽  
Cell Membrane ◽  
Sensory Neurons ◽  
Neuronal Cell ◽  
Molecular Processes ◽  
Biological Mechanisms ◽  
Mechanosensitive Ion Channels ◽  
Complex Interactions ◽  
Different Types ◽  
Intracellular Organelles

Mechanosensing is a key feature through which organisms can receive inputs from the environment and convert them into specific functional and behavioral outputs. Mechanosensation occurs in many cells and tissues, regulating a plethora of molecular processes based on the distribution of forces and stresses both at the cell membrane and at the intracellular organelles levels, through complex interactions between cells’ microstructures, cytoskeleton, and extracellular matrix. Although several primary and secondary mechanisms have been shown to contribute to mechanosensation, a fundamental pathway in simple organisms and mammals involves the presence of specialized sensory neurons and the presence of different types of mechanosensitive ion channels on the neuronal cell membrane. In this contribution, we present a review of the main ion channels which have been proven to be significantly involved in mechanotransduction in neurons. Further, we discuss recent studies focused on the biological mechanisms and modeling of mechanosensitive ion channels’ gating, and on mechanotransduction modeling at different scales and levels of details.

scholarly journals Two β-glucuronosyltransferases involved in the biosynthesis of type II arabinogalactans function in mucilage polysaccharide matrix organization in Arabidopsis thaliana

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Oyeyemi O. Ajayi ◽  
Michael A. Held ◽  
Allan M. Showalter
Keyword(s):  
Arabidopsis Thaliana ◽  
Seed Size ◽  
Seed Coat ◽  
Glucuronic Acid ◽  
Industrial Applications ◽  
Crystalline Cellulose ◽  
Sugar Residue ◽  
Composition Analysis ◽  
Cellulose Content ◽  
Type Ii

Abstract Background Arabinogalactan-proteins (AGPs) are heavily glycosylated with type II arabinogalactan (AG) polysaccharides attached to hydroxyproline residues in their protein backbone. Type II AGs are necessary for plant growth and critically important for the establishment of normal cellular functions. Despite the importance of type II AGs in plant development, our understanding of the underlying role of these glycans/sugar residues in mucilage formation and seed coat epidermal cell development is poorly understood and far from complete. One such sugar residue is the glucuronic acid residues of AGPs that are transferred onto AGP glycans by the action of β-glucuronosyltransferase genes/enzymes. Results Here, we have characterized two β-glucuronosyltransferase genes, GLCAT14A and GLCAT14C, that are involved in the transfer of β-glucuronic acid (GlcA) to type II AGs. Using a reverse genetics approach, we observed that glcat14a-1 mutants displayed subtle alterations in mucilage pectin homogalacturonan (HG) compared to wild type (WT), while glcat14a-1glcat14c-1 mutants displayed much more severe mucilage phenotypes, including loss of adherent mucilage and significant alterations in cellulose ray formation and seed coat morphology. Monosaccharide composition analysis showed significant alterations in the sugar amounts of glcat14a-1glcat14c-1 mutants relative to WT in the adherent and non-adherent seed mucilage. Also, a reduction in total mucilage content was observed in glcat14a-1glcat14c-1 mutants relative to WT. In addition, glcat14a-1glcat14c-1 mutants showed defects in pectin formation, calcium content and the degree of pectin methyl-esterification (DM) as well as reductions in crystalline cellulose content and seed size. Conclusions These results raise important questions regarding cell wall polymer interactions and organization during mucilage formation. We propose that the enzymatic activities of GLCAT14A and GLCAT14C play partially redundant roles and are required for the organization of the mucilage matrix and seed size in Arabidopsis thaliana. This work brings us a step closer towards identifying potential gene targets for engineering plant cell walls for industrial applications.

Seed morphology and ultrastructure in Citrus garrawayi (Rutaceae) in relation to germinability

2007 ◽  
Vol 55 (6) ◽  
pp. 618 ◽  
Author(s):  
Kim N. Hamilton ◽  
Sarah E. Ashmore ◽  
Rod A. Drew ◽  
Hugh W. Pritchard
Keyword(s):  
Moisture Content ◽  
Seed Size ◽  
Seed Coat ◽  
Outer Integument ◽  
Dry Weight ◽  
Seed Morphology ◽  
Embryonic Axis ◽  
Morphological Development ◽  
Seed Moisture Content ◽  
Immature Seeds

Combinational traits of seed size and seed-coat hardness in Citrus garrawayi (F.M.Bailey) (syn. of Microcitrus garrowayi) were investigated as markers for estimation of seed morphological and physiological maturity. Seed size (length) and coat hardness correlated well with changes in seed coat and embryo morphological development, dry-weight accumulation, decreases in moisture content and a significant increase in germinability. Seed moisture content decreased from 82 ± 1% in immature seeds to 40 ± 1% at seed maturation. The outer integument of immature seeds consisted of thin-walled epidermal fibres from which outgrowths of emerging protrusions were observed. In comparison, mature seed coats were characterised by the thickening of the cell walls of the epidermal fibres from which arose numerous protrusions covered by an extensive mucilage layer. Immature seeds, with incomplete embryo and seed-coat histodiffereniation, had a low mean germination percentage of 4 ± 4%. Premature seeds, with a differentiated embryonic axis, were capable of much higher levels of germination (51 ± 10%) before the attainment of mass maturity. Mature seeds, with the most well differentiated embryonic axis and maximum mean dry weight, had the significantly highest level of germination (88 ± 3%).

Correlation Studies of Some Agronomic Characters in Sesame

1970 ◽  
Vol 6 (1) ◽  
pp. 27-31 ◽  
Author(s):  
M. Osman Khidir ◽  
H. El Gizouli Osman
Keyword(s):  
Seed Size ◽  
Seed Coat ◽  
Coat Colour ◽  
Stem Height ◽  
Agronomic Characters ◽  
Seed Coat Colour ◽  
Correlation Studies ◽  
First Maturity ◽  
Criteria For Selection ◽  
Number Of Branches

SummaryIn 90 local sesame types there was some association between seed coat colour and seed size, stem height, number of branches, number of pods, yield per plant and earliness. Forty-five coefficients show the degree of correlation between ten agronomic characters. Yield was significantly and positively correlated with all characters except the number of days to first flowering and to first maturity. Stem height, number of pods per plant and seed size seem to be the best criteria for selection in sesame.

Changes in mechanisms and intensity of Western U.S. floods, 1960-2013

2021 ◽  
Author(s):  
Jessica Fayne ◽  
Huilin Huang ◽  
Mike Fischella ◽  
Yufei Liu ◽  
Zhaoxin Ban ◽  
...  
Keyword(s):  
Extreme Precipitation ◽  
Large Scale ◽  
Critical Factor ◽  
Flood Frequency ◽  
Atmospheric Rivers ◽  
Convective Storms ◽  
Noticeable Increase ◽  
Complex Interactions ◽  
Different Types ◽  
The Impact

<p>Extreme precipitation, a critical factor in flooding, has selectively increased with warmer temperatures in the Western U.S. Despite this, the streamflow measurements have captured no noticeable increase in large-scale flood frequency or intensity. As flood studies have mostly focused on specific flood events in particular areas, analyses of large-scale floods and their changes have been scarce. For floods during 1960-2013, we identify six flood generating mechanisms (FGMs) that are prominent across the Western U.S., including atmospheric rivers and non-atmospheric rivers, monsoons, convective storms, radiation-driven snowmelt, and rain-on-snow, in order to identify to what extent different types of floods are changing based on the dominant FGM. The inconsistency between extreme precipitation and lack of flood increase suggests that the impact of climate change on flood risk has been modulated by hydro-meteorological and physiographic processes such as sharp increases in temperature that drive increased evapotranspiration and decreased soil moisture. Our results emphasize the importance of FGMs in understanding the complex interactions of flooding and climatic changes and explain the broad spatiotemporal changes that have occurred across the vast Western U.S. for the past 50 years.</p>

scholarly journals Mapping and identification of yellow seed coat color genes in Brassica juncea L.

2020 ◽  
Author(s):  
Zhen Huang ◽  
Yang Wang ◽  
Hong Lu ◽  
Xiang Liu ◽  
Lu Liu ◽  
...  
Keyword(s):  
Candidate Gene ◽  
Brassica Juncea ◽  
Seed Coat ◽  
Coat Color ◽  
Seed Color ◽  
Seed Coat Color ◽  
Flavonoid Pathway ◽  
Yellow Seed ◽  
Color Formation ◽  
Yellow Seed Coat

Abstract BackgroundYellow seed breeding is an effective method to improve the oil content in rapeseed. Yellow seed coat color formation is influenced by various factors, and no clear mechanisms are known. In this study, Bulked segregant RNA-Seq (BSR-Seq) of BC9 population of Wuqi mustard (yellow seed) and Wugong mustard (brown seed) was used to identity the candidate genes controlling the yellow seed color in Brassica juncea L.ResultsYellow seed coat color gene was mapped to chromosome A09, and differentially expressed genes (DEGs) between brown and yellow bulks enriched in the flavonoid pathway. A significant correlation between the expression of BjF3H and BjTT5 and the content of the seed coat color related indexes was identified. Two intron polymorphism (IP) markers linked to the target gene were developed around BjF3H. Therefore, BjF3H was considered as the candidate gene. The BjF3H coding sequences (CDS) of Wuqi mustard and Wugong mustard are 1071-1077bp, encoding protein of 356-358 amino acids. One amino acid change (254, F/V) was identified in the conserved domain. This mutation site was detected in four Brassica rapa (B. rapa) and six Brassica juncea (B. juncea) lines, but not in Brassica napus (B. napus).ConclusionsThe results indicated BjF3H is a candidate gene that related to yellow seed coat color formation in Brassica juncea and provided a comprehensive understanding of the yellow seed coat color mechanism.

Soybean Seed Size Influences Expression of the Impermeable Seed‐Coat Trait 1

Crop Science ◽  
1986 ◽  
Vol 26 (3) ◽  
pp. 634-637 ◽  
Author(s):  
H. J. Hill ◽  
S. H. West ◽  
K. Hinson
Keyword(s):  
Seed Size ◽  
Seed Coat ◽  
Soybean Seed ◽  
Impermeable Seed Coat

Susceptibility of mungbean varieties to the bruchid species Callosobruchus maculatus (F.), C. phaseoli (Gyll.), C. chinensis (L.), and Acanthoscelides obtectus (Say.) (Coleoptera:Chrysomelidae)

2000 ◽  
Vol 51 (1) ◽  
pp. 85 ◽  
Author(s):  
C. J. Lambrides ◽  
B. C. Imrie
Keyword(s):  
Seed Size ◽  
Seed Coat ◽  
Callosobruchus Maculatus ◽  
Acanthoscelides Obtectus ◽  
Oviposition Deterrents ◽  
Bruchid Resistance ◽  
Small Seed ◽  
Biochemical Resistance ◽  
Acanthoscelides Obtectus Say

Twenty-six mungbean varieties and accessions were screened for resistance to 4 bruchid species (Coleoptera : Chrysomelidae). On the basis of the percentage of seeds damaged all Australian commercial mungbean varieties tested here were highly susceptible to strains of Callosobruchus maculatus and C. chinensis, the 2 species that cause most damage worldwide to mungbean in storage. In addition, 3 accessions of wild mungbean appeared to have bruchid resistance. The texture layer present on the seed coat of some mungbean varieties and small seed size may act as oviposition deterrents. Consequently, these assays for determining resistance to bruchid infestation may not be suitable for identifying biochemical resistance of some mungbean genotypes.

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