scholarly journals Leaf δ15N, δ13C and Their Associations with Soil Fungal Biodiversity, Ectomycorrhizal and Plant Pathogenic Abundance in Forest Ecosystems of China

2020 ◽  
Author(s):  
Wenchen Song
Keyword(s):  
Relative Abundance ◽  
Plant Pathogen ◽  
Large Scale ◽  
Plant Pathogens ◽  
Forest Ecosystems ◽  
Fungal Communities ◽  
Factors Affecting ◽  
Biogeographic Patterns ◽  
Fungal Biodiversity ◽  
Temperature And Precipitation

Abstract Leaf δ15N and δ13C are important functional traits in biogeographic studies of forest ecosystems. However, little is known about their relationships with soil fungal biodiversity, ectomycorrhizal, and plant pathogen abundance at large scales. In this study, leaf and soil samples were collected from 33 forest reserves along a large range across China to explore the associations between leaf δ15N and δ13C and soil fungal biodiversity, ectomycorrhizal, and plant pathogen relative abundance using molecular and stable isotope techniques. We found large-scale biogeographic patterns for leaf δ15N, δ13C, soil fungal biodiversity, and ectomycorrhizal relative abundance. The soil-plant-microbial interaction may contribute to the variations in leaf δ15N, δ13C, and soil fungal communities across different types of forest ecosystems. Temperature and precipitation were the main factors affecting large-scale biogeographic patterns of latitude and longitude. Leaf δ15N was mainly affected by the relative abundance of ectomycorrhizal fungi and leaf δ13C was affected by the relative abundance of plant pathogens. Leaf δ15N and δ13C may be indicators reflecting soil fungal communities in forest ecosystems.

Distinct large-scale biogeographic patterns of fungal communities in bulk soil and soybean rhizosphere in China

2018 ◽  
Vol 644 ◽  
pp. 791-800 ◽  
Author(s):  
Jun Zhang ◽  
Baogang Zhang ◽  
Yao Liu ◽  
Yanqing Guo ◽  
Peng Shi ◽  
...  
Keyword(s):  
Large Scale ◽  
Fungal Communities ◽  
Bulk Soil ◽  
Biogeographic Patterns

Verticillium dahliaealtersPseudomonasspp. populations and HCN gene expression in the rhizosphere of strawberry

2010 ◽  
Vol 56 (11) ◽  
pp. 906-915 ◽  
Author(s):  
Nadine J. DeCoste ◽  
Vijay J. Gadkar ◽  
Martin Filion
Keyword(s):  
Gene Expression ◽  
Plant Pathogen ◽  
Plant Pathogens ◽  
Rhizosphere Soil ◽  
Pseudomonas Sp ◽  
Factors Affecting ◽  
Qrt Pcr ◽  
Reverse Transcription Pcr ◽  
Production Of Hydrogen ◽  
Culture Independent

The production of hydrogen cyanide (HCN) by beneficial root-associated bacteria is an important mechanism for the biological control of plant pathogens. However, little is known about the biotic factors affecting HCN gene expression in the rhizosphere of plants. In this study, real-time reverse transcription PCR (qRT–PCR) assays were developed to investigate the effect of the plant pathogen Verticillium dahliae on hcnC (encoding for HCN biosynthesis) gene expression in Pseudomonas sp. LBUM300. Strawberry plants were inoculated with Pseudomonas sp. LBUM300 and (or) V. dahliae and grown in pots filled with nonsterilized field soil. RNA was extracted from rhizosphere soil sampled at 0, 15, 30, and 45 days following inoculation with V. dahliae and used for qRT–PCR analyses. Populations of V. dahliae and Pseudomonas sp. LBUM300 were also monitored using a culture-independent qPCR approach. hcnC expression was detected at all sampling dates. The presence of V. dahliae had a significant stimulation effect on hcnC gene expression and also increased the population of Pseudomonas sp. LBUM300. However, the V. dahliae population was not altered by the presence of Pseudomonas sp. LBUM300. To our knowledge, this study is the first to evaluate the effect of a plant pathogen on HCN gene expression in the rhizosphere soil.

scholarly journals Dispersal Limitation Plays Stronger Role in the Community Assembly of Fungi Relative to Bacteria in Rhizosphere Across the Arable Area of Medicinal Plant

2021 ◽  
Vol 12 ◽  
Author(s):  
Guozhuang Zhang ◽  
Guangfei Wei ◽  
Fugang Wei ◽  
Zhongjian Chen ◽  
Mingjun He ◽  
...  
Keyword(s):  
Community Assembly ◽  
Large Scale ◽  
Panax Notoginseng ◽  
Dispersal Limitation ◽  
Fungal Communities ◽  
Ecosystem Functions ◽  
Biogeographic Patterns ◽  
Ecological Patterns ◽  
Bacteria And Fungi ◽  
Occurrence Patterns

Understanding the ecological patterns of rhizosphere microbial communities is critical for propelling sustainable agriculture and managing ecosystem functions by exploiting microorganisms. However, this knowledge is still unclear, especially under host-associated large-scale and regarding the comparison between bacteria and fungi. We examined community assembly processes and community characters including environmental thresholds and co-occurrence patterns across the cultivatable area of Panax notoginseng for bacteria and fungi. Both are vital members of the rhizosphere but differ considerably in their life history and dispersal potentiality. Edaphic factors drove the parallel variations of bacterial and fungal communities. Although bacterial and fungal communities exhibited similar biogeographic patterns, the assembly of fungi was more driven by dispersal limitation than selection compared with bacteria. This finding supported the ‘size-dispersal’ hypothesis. pH and total nitrogen respectively mediated the relative importance of deterministic and stochastic processes in shaping bacterial and fungal communities. In addition, fungal communities exhibited potentially broader environmental thresholds and more modular co-occurrence patterns than bacteria (bacteria: 0.67; fungi: 0.78). These results emphasized the importance of dispersal limitation in structuring rhizosphere microbiota and shaping community features of ecologically distinct microorganisms. This study provides insights into the improved prediction and management of the key functions of rhizosphere microbiota.

scholarly journals Soil bacterial and fungal communities of six bahiagrass cultivars

PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e7014 ◽  
Author(s):  
Lukas Beule ◽  
Ko-Hsuan Chen ◽  
Chih-Ming Hsu ◽  
Cheryl Mackowiak ◽  
Jose C.B. Dubeux Jr. ◽  
...  
Keyword(s):  
Microbial Communities ◽  
Community Composition ◽  
Relative Abundance ◽  
Fungal Community ◽  
Plant Pathogens ◽  
Soil Microbial Communities ◽  
Fungal Communities ◽  
Soil Dna ◽  
Soil Microbial ◽  
Soil Bacterial

BackgroundCultivars of bahiagrass (Paspalum notatumFlüggé) are widely used for pasture in the Southeastern USA. Soil microbial communities are unexplored in bahiagrass and they may be cultivar-dependent, as previously proven for other grass species. Understanding the influence of cultivar selection on soil microbial communities is crucial as microbiome taxa have repeatedly been shown to be directly linked to plant performance.ObjectivesThis study aimed to determine whether different bahiagrass cultivars interactively influence soil bacterial and fungal communities.MethodsSix bahiagrass cultivars (‘Argentine’, ‘Pensacola’, ‘Sand Mountain’, ‘Tifton 9’, ‘TifQuik’, and ‘UF-Riata’) were grown in a randomized complete block design with four replicate plots of 4.6 × 1.8 m per cultivar in a Rhodic Kandiudults soil in Northwest Florida, USA. Three soil subsamples per replicate plot were randomly collected. Soil DNA was extracted and bacterial 16S ribosomal RNA and fungal ribosomal internal transcribed spacer 1 genes were amplified and sequenced with one Illumina Miseq Nano.ResultsThe soil bacterial and fungal community across bahiagrass cultivars showed similarities with communities recovered from other grassland ecosystems. Few differences in community composition and diversity of soil bacteria among cultivars were detected; none were detected for soil fungi. The relative abundance of sequences assigned to nitrite-oxidizingNitrospirawas greater under ‘Sand Mountain’ than ‘UF-Riata’. Indicator species analysis revealed that several bacterial and fungal indicators associated with either a single cultivar or a combination of cultivars are likely to be plant pathogens or antagonists.ConclusionsOur results suggest a low impact of plant cultivar choice on the soil bacterial community composition, whereas the soil fungal community was unaffected. Shifts in the relative abundance ofNitrospiramembers in response to cultivar choice may have implications for soil N dynamics. The cultivars associated with presumptive plant pathogens or antagonists indicates that the ability of bahiagrass to control plant pathogens may be cultivar-dependent, however, physiological studies on plant-microbe interactions are required to confirm this presumption. We therefore suggest that future studies should explore the potential of different bahiagrass cultivars on plant pathogen control, particularly in sod-based crop rotation.

Ecological and environmental factors affecting the foraging activity of the White-bellied Heron Ardea insignis (Hume, 1878) in Bhutan

2021 ◽  
pp. 1-18
Author(s):  
PEMA KHANDU ◽  
GEORGE A. GALE ◽  
SARA BUMRUNGSRI
Keyword(s):  
Relative Abundance ◽  
Habitat Restoration ◽  
Prey Species ◽  
Catch Per Unit Effort ◽  
Factors Affecting ◽  
Prey Biomass ◽  
Gravel Mining ◽  
Unit Effort ◽  
Prey Preferences ◽  
The Government

Summary White-bellied Heron Ardea insignis (WBH) is critically endangered, but we lack data on many aspects of its basic ecology and threats to the species are not clearly understood. The goal of this study was to analyse WBH foraging microhabitat selection, foraging behaviour, and prey preferences in two river basins (Punatsangchhu and Mangdechhu) in Bhutan which are likely home to one of the largest remaining populations of WBH. We also explored the relationship between the relative abundance of the WBH and prey biomass catch per unit effort within four foraging river microhabitats (pool, pond, riffle and run). Prey species were sampled in 13 different 100-m thalweg lengths of the rivers using cast nets and electrofishing gear. Riffles and pools were the most commonly used microhabitats; relative abundance was the highest in riffles. The relative abundance of WBH and prey biomass catch per unit effort (CPUE) also showed a weak but significant positive correlation (rs = 0.22). The highest biomass CPUE was observed in riffles while the lowest was found in the ponds. From the 97 prey items caught by the WBH, 95% of the prey were fish. The WBH mainly exploited three genera of fish (Garra, Salmo, and Schizothorax) of which Schizothorax (64%) was the most frequently consumed. This study provides evidence in support of further protection of critical riverine habitat and fish resources for this heron. Regular monitoring of sand and gravel mining, curbing illegal fishing, habitat restoration/mitigation, and developing sustainable alternatives for local people should be urgently implemented by the government and other relevant agencies. Further study is also required for understanding the seasonal variation and abundance of its prey species in their prime habitats along the Punatsangchhu and Mangdechhu basins.

scholarly journals Seasonal Variation Characteristics of Bacteria and Fungi in PM2.5 in Typical Basin Cities of Xi’an and Linfen, China

Atmosphere ◽  
2021 ◽  
Vol 12 (7) ◽  
pp. 809
Author(s):  
Sen Wang ◽  
Wanyu Liu ◽  
Jun Li ◽  
Haotian Sun ◽  
Yali Qian ◽  
...  
Keyword(s):  
Seasonal Variation ◽  
Relative Abundance ◽  
Pathogenic Bacteria ◽  
High Throughput Sequencing ◽  
Fine Particulate Matter ◽  
Ecological Functions ◽  
Factors Affecting ◽  
Bacterial Phyla ◽  
Variation Characteristics ◽  
Bacteria And Fungi

Microorganisms existing in airborne fine particulate matter (PM2.5) have key implications in biogeochemical cycling and human health. In this study, PM2.5 samples, collected in the typical basin cities of Xi’an and Linfen, China, were analyzed through high-throughput sequencing to understand microbial seasonal variation characteristics and ecological functions. For bacteria, the highest richness and diversity were identified in autumn. The bacterial phyla were dominated by Proteobacteria, Actinobacteria, Firmicutes, and Bacteroidetes. Metabolism was the most abundant pathway, with the highest relative abundance found in autumn. Pathogenic bacteria (Pseudomonas, Acinetobacter, Serratia, and Delftia) were positively correlated with most disease-related pathways. Besides, C cycling dominated in spring and summer, while N cycling dominated in autumn and winter. The relative abundance of S cycling was highest during winter in Linfen. For fungi, the highest richness was found in summer. Basidiomycota and Ascomycota mainly constituted the fungal phyla. Moreover, temperature (T) and sulfur dioxide (SO2) in Xi’an, and T, SO2, and nitrogen dioxide (NO2) in Linfen were the key factors affecting microbial community structures, which were associated with different pollution characteristics in Xi’an and Linfen. Overall, these results provide an important reference for the research into airborne microbial seasonal variations, along with their ecological functions and health impacts.

scholarly journals On the geophysical processes impacting palaeo-sea-level observations

2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Yusuke Yokoyama ◽  
Anthony Purcell
Keyword(s):  
Sea Level ◽  
Large Scale ◽  
Global Climate ◽  
Sea Level Change ◽  
Sea Level Changes ◽  
Factors Affecting ◽  
Ice Volume ◽  
Level Change ◽  
Recent Developments ◽  
Geophysical Processes

AbstractPast sea-level change represents the large-scale state of global climate, reflecting the waxing and waning of global ice sheets and the corresponding effect on ocean volume. Recent developments in sampling and analytical methods enable us to more precisely reconstruct past sea-level changes using geological indicators dated by radiometric methods. However, ice-volume changes alone cannot wholly account for these observations of local, relative sea-level change because of various geophysical factors including glacio-hydro-isostatic adjustments (GIA). The mechanisms behind GIA cannot be ignored when reconstructing global ice volume, yet they remain poorly understood within the general sea-level community. In this paper, various geophysical factors affecting sea-level observations are discussed and the details and impacts of these processes on estimates of past ice volumes are introduced.

scholarly journals Factors affecting presence and relative abundance of the Endangered volcano rabbit Romerolagus diazi, a habitat specialist

Oryx ◽  
2021 ◽  
pp. 1-10
Author(s):  
Felipe Osuna ◽  
Roger Guevara ◽  
Enrique Martínez-Meyer ◽  
Raúl Alcalá ◽  
Alejandro Espinosa de los Monteros
Keyword(s):  
Sierra Nevada ◽  
Relative Abundance ◽  
Linear Models ◽  
Cattle Grazing ◽  
Patch Occupancy ◽  
Factors Affecting ◽  
Rock Cover ◽  
Volcanic Fields ◽  
Mountain Grasslands ◽  
Insight Into

Abstract Habitat specialists are particularly vulnerable to extinction when habitat conditions are altered. Information on the habitat use of such species is thus important because it provides insight into factors that influence distribution and abundance, which is crucial for conservation. Here, we aimed to identify factors that influence the patterns of presence and abundance of the Endangered volcano rabbit Romerolagus diazi, a rare leporid with a patchy distribution. Through exhaustive sampling of its range in the Sierra Chichinautzin and Sierra Nevada volcanic fields, Mexico, and using generalized linear models, we found that the probability of patch occupancy was higher where bunchgrass cover exceeded 75%, rock cover exceeded 5%, no cattle grazing was observed and human settlements were at least 7 km away. Patches with greater relative abundance were those with similar characteristics, but located at elevations > 3,600 m, and with rock cover < 15%. Cattle grazing was identified as a major threat to local populations of the volcano rabbit, particularly in the Sierra Chichinautzin. Because of the significance of bunchgrasses for this species, the protection of the mountain grasslands is required in both volcanic fields.

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