scholarly journals Comparative Transcriptome Analysis of Storage Root Reveals Regulatory Mechanisms of Lignin Biosynthesis During Root Development in Two Sweetpotato Cultivars

2021 ◽  
Author(s):  
Fuyun Hou ◽  
Zhen Qin ◽  
Taifeng Du ◽  
Yuanyuan Zhou ◽  
Aixian Li ◽  
...  
Keyword(s):  
Root Development ◽  
Ipomoea Batatas ◽  
Molecular Mechanisms ◽  
Signal Transduction Pathway ◽  
Lignin Biosynthesis ◽  
Storage Root ◽  
Storage Roots ◽  
Homologous Genes ◽  
Phenylpropanoid Biosynthesis ◽  
Storage Root Development

Abstract BackgroundSweetpotato(Ipomoea batatas (L.) Lam.) is one of the most important crops with high storage roots yield. Lignin affects the storage root formation. However, the molecular mechanisms of lignin biosynthesis in storage roots development have been lacking.ResultsTo reveal the molecular mechanism of lignin biosynthesis and identify new homologous genes in lignin biosynthesis during storage root development, the storage root (SR) at three different stages (D1, D2 and D3) in the two cultivars (Jishu25 and Jishu29) was investigated with full-length and second-generation transcriptome. A total of 52,137 transcripts and 21,148 unigenes were obtained after corrected with Hiseq2500 sequencing. Through the comparative analysis, 9577 unigenes were found to be differently expressed in the different stage in two cultivars. Among of them, 91 unigenes enriched in the phenylpropanoid biosynthesis, and 201 unigenes in hormone signal transduction pathway with KEGG analysis. Weighted gene co-expression network analysis of differentially expressed unigenes showed that lignin biosynthesis genes might be co-expressed with transcription factors such as AP2/ERF and MYB at the transcription level, and regulated by phytohormones auxin and GA3.ConclusionsTaken together, our findings will throw light on molecular regulatory mechanism of lignin biosynthesis involved in storage root development.

scholarly journals Comparative analysis of the SPL genes among four Ipomoea species and the evidence for a role of some IbSPLs in storage root development in sweet potato (Ipomoea batatas)

2021 ◽  
Author(s):  
Haoyun Sun ◽  
Jingzhao Mei ◽  
Wenqian Hou ◽  
Yang Zhang ◽  
Tao Xu ◽  
...  
Keyword(s):  
Root Development ◽  
Ipomoea Batatas ◽  
Target Genes ◽  
Functional Divergence ◽  
Expression Patterns ◽  
Evolutionary Analysis ◽  
Storage Root ◽  
Storage Roots ◽  
Spl Genes ◽  
Storage Root Development

Abstract Background As a major family of plant-specific transcription factors, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) genes play crucial regulatory roles in plant growth, development, and stress tolerance. SPL transcription factor family has been widely studied in various plant species, however, there are no systematic studies on SPL genes in genus Ipomoea. Results In this study, a total of 29, 27, 26, 23 SPL genes were identified in Ipomoea batatas, Ipomoea trifida, Ipomoea triloba, and Ipomoea nil, respectively. Phylogenetic analysis indicated that Ipomoea SPL genes could be clustered into eight clades. SPL members within the same clade showed similar gene structures, domain organizations, and cis-acting element compositions, suggesting similarity of biological function potentially. Evolutionary analysis revealed that segmental duplication events played a major role in the Ipomoea genus-specific expansion of SPL genes. Of these Ipomoea SPL genes, 69 were predicted as the target genes of miR156, and 7 IbSPL genes were further confirmed by degradome data. Additionally, IbSPL genes showed diverse expression patterns in various tissues, implying their functional conservation and divergence. Finally, by combining the information from expression patterns and regulatory sub-networks, we found that four IbSPL genes (IbSPL16/IbSPL17/IbSPL21/IbSPL28) may be involved in the formation and development of storage roots. Conclusions This study not only provides novel insights into the evolutionary and functional divergence of the SPL genes in all available sequenced species in genus Ipomoea, but also lays a foundation for further elucidation of the potential functional roles of IbSPL genes during storage root development.

scholarly journals Carbohydrate-Related Changes in Sweetpotato Storage Roots during Development

2000 ◽  
Vol 125 (2) ◽  
pp. 200-204 ◽  
Author(s):  
Don R. La Bonte ◽  
David H. Picha ◽  
Hester A. Johnson
Keyword(s):  
Root Development ◽  
Ipomoea Batatas ◽  
Clonal Selection ◽  
Sucrose Content ◽  
Storage Root ◽  
Storage Roots ◽  
Glucose Content ◽  
Total Sugars ◽  
Storage Root Development ◽  
The Relationship

The quantity and pattern of carbohydrate-related changes during storage root development differed among six sweetpotato cultivars [Ipomoea batatas (L.) Poir. `Beauregard', `Heart-o-Gold', `Jewel', `Rojo Blanco', `Travis', and `White Star']. Measurements were taken for individual sugars, total sugars, alcohol-insoluble solids (AIS, crude starch), and dry weight (DW) at 2-week intervals from 7 to 19 weeks after transplanting (WAT) in two separate years. Sucrose was the major sugar during all stages of development, representing at least 68% of total sugars across all cultivars and dates. Pairwise comparisons showed `Heart-o-Gold' had the highest sucrose content among the cultivars. Sucrose content increased by 56% for `Heart-o-Gold' over the 12 weeks of assay, ranking first among the cultivars at 17 and 19 WAT and possessing 27% more sucrose than the next highest ranking cultivar, `Jewel', at 19 WAT. Fructose content profiles varied among and within cultivars. `Beauregard' showed a consistent increase in fructose throughout development while `Whitestar' showed a consistent decrease. The other cultivars were inconsistent in their fructose content profiles. Glucose content profiles were similar to those for fructose changes during development. The relationship between monosaccharides was fructose = 0.7207 × glucose + 0.0241. Cultivars with the highest fructose and glucose content could be selected by breeders after 13 WAT. Early clonal selection for high sucrose and total sugars is less promising because substantive changes in clonal rank occurred for sucrose and total sugars after 15 WAT. Cultivars ranking the highest in total sugars had either more monosaccharides to compensate for a lower sucrose content or more sucrose to compensate for a lower monosaccharide content. The relationship between DW and AIS was similar (AIS = 0.00089 × DW), and DW and AIS increased with time for most cultivars. Cultivars with high DW and AIS can be selected early during storage root development.

scholarly journals A low-cost aeroponic phenotyping system for storage root development: unravelling the below-ground secrets of cassava (Manihot esculenta)

Plant Methods ◽  
2019 ◽  
Vol 15 (1) ◽  
Author(s):  
Michael Gomez Selvaraj ◽  
Maria Elker Montoya-P ◽  
John Atanbori ◽  
Andrew P. French ◽  
Tony Pridmore
Keyword(s):  
Root Growth ◽  
Root Development ◽  
Low Cost ◽  
Root Traits ◽  
Suitable Model ◽  
Root Initiation ◽  
Storage Root ◽  
Economic Traits ◽  
Storage Roots ◽  
Storage Root Development

Abstract Background Root and tuber crops are becoming more important for their high source of carbohydrates, next to cereals. Despite their commercial impact, there are significant knowledge gaps about the environmental and inherent regulation of storage root (SR) differentiation, due in part to the innate problems of studying storage roots and the lack of a suitable model system for monitoring storage root growth. The research presented here aimed to develop a reliable, low-cost effective system that enables the study of the factors influencing cassava storage root initiation and development. Results We explored simple, low-cost systems for the study of storage root biology. An aeroponics system described here is ideal for real-time monitoring of storage root development (SRD), and this was further validated using hormone studies. Our aeroponics-based auxin studies revealed that storage root initiation and development are adaptive responses, which are significantly enhanced by the exogenous auxin supply. Field and histological experiments were also conducted to confirm the auxin effect found in the aeroponics system. We also developed a simple digital imaging platform to quantify storage root growth and development traits. Correlation analysis confirmed that image-based estimation can be a surrogate for manual root phenotyping for several key traits. Conclusions The aeroponic system developed from this study is an effective tool for examining the root architecture of cassava during early SRD. The aeroponic system also provided novel insights into storage root formation by activating the auxin-dependent proliferation of secondary xylem parenchyma cells to induce the initial root thickening and bulking. The developed system can be of direct benefit to molecular biologists, breeders, and physiologists, allowing them to screen germplasm for root traits that correlate with improved economic traits.

Sweetpotato root development influences susceptibility to black rot caused by the fungal pathogen Ceratocystis fimbriata

2021 ◽  
Author(s):  
Camilo Humberto Parada Rojas ◽  
Kenneth Pecota ◽  
Christie Almeyda ◽  
G. Craig Yencho ◽  
Lina Quesada-Ocampo
Keyword(s):  
Root Development ◽  
Disease Incidence ◽  
Black Rot ◽  
Wild Relative ◽  
Storage Root ◽  
Storage Roots ◽  
Ceratocystis Fimbriata ◽  
Breeding Lines ◽  
Below Ground ◽  
Storage Root Development

Black rot of sweetpotato caused by Ceratocystis fimbriata, is an important reemerging disease threatening sweetpotato production in the United States. This study assessed disease susceptibility of the storage root surface, storage root cambium, and slips (vine cuttings) of 48 sweetpotato cultivars, advanced breeding lines, and wild relative accessions. We also characterized the effect of storage root development on susceptibility to C. fimbriata. None of the cultivars examined at the storage root level were resistant, with most cultivars exhibiting similar levels of susceptibility. In storage roots, Jewel and Covington were the least susceptible and significantly different from White Bonita, the most susceptible cultivar. In the slip, significant differences in disease incidence were observed for above and below ground plant structures among cultivars, advanced breeding lines, and wild relative accessions. Burgundy and Ipomoea littoralis displayed less below ground disease incidence as compared to NASPOT 8, Sunnyside and LSU-417, the most susceptible cultivars. Correlation of black rot susceptibility between storage roots and slips was not significant, suggesting that slip assays are not useful to predict resistance in storage roots. Immature, early developing storage roots were comparatively more susceptible than older, fully developed storage roots. The high significant correlation between storage root cross-section area and cross-sectional lesion ratio suggests the presence of an unfavorable environment for C. fimbriata as the storage root develops. Incorporating applications of effective fungicides at transplanting and during early storage root development when sweetpotato tissues are most susceptible to black rot infection may improve disease management efforts.

scholarly journals Characterization of Adventitious Root Development in Sweetpotato

HortScience ◽  
2009 ◽  
Vol 44 (3) ◽  
pp. 651-655 ◽  
Author(s):  
Arthur Q. Villordon ◽  
Don R. La Bonte ◽  
Nurit Firon ◽  
Yanir Kfir ◽  
Etan Pressman ◽  
...  
Keyword(s):  
Root Development ◽  
Adventitious Root ◽  
Adventitious Roots ◽  
Vascular Cambium ◽  
Storage Root ◽  
Storage Roots ◽  
Adventitious Root Development ◽  
Xylem Elements ◽  
Storage Root Development

Adventitious roots of ‘Beauregard’ and ‘Georgia Jet’ sweetpotato were observed and anatomically characterized over a period of 60 days of storage root development. The majority of ‘Beauregard’ and ‘Georgia Jet’ adventitious roots sampled at 5 to 7 days after transplanting (DAT) possessed anatomical features (five or more protoxylem elements) associated with storage root development. The majority of ‘Beauregard’ (86%) and ‘Georgia Jet’ (89%) storage roots sampled at 60 to 65 DAT were traced directly to adventitious roots extant at 5 to 7 DAT. The two varieties, however, differed in the timing in which regular and anomalous cambia were formed. Regular vascular cambium development, i.e., initiation and completion, was observed in both varieties at 19 to 21 DAT. Formation of complete regular vascular cambium was negligible for ‘Beauregard’ (4%) in comparison with ‘Georgia Jet’ (32%) at 26 to 28 DAT. However, anomalous cambia development adjacent to xylem elements was greater in ‘Beauregard’ (30%) in comparison with ‘Georgia Jet’ (13%). Nearly 40% to 50% of samples in both varieties showed extensive lignification in the stele region. At 32 to 35 DAT, 62% to 70% of the adventitious roots for both varieties had either been initiated (developed anomalous cambium) or were lignified. The remaining adventitious roots showed intermediate stages of vascular cambium development. The adventitious root count increased up to 19 to 21 DAT and then remained constant up to 32 to 35 DAT. These accumulated results suggest that the initial stages of adventitious root development are critical in determining storage root set in sweetpotato.

scholarly journals Molecular Characterization and Target Prediction of Candidate miRNAs Related to Abiotic Stress Responses and/or Storage Root Development in Sweet Potato

Genes ◽  
2022 ◽  
Vol 13 (1) ◽  
pp. 110
Author(s):  
Li Sun ◽  
Yiyu Yang ◽  
Hong Pan ◽  
Jiahao Zhu ◽  
Mingku Zhu ◽  
...  
Keyword(s):  
Sweet Potato ◽  
Root Development ◽  
Stress Responses ◽  
Expression Patterns ◽  
Target Prediction ◽  
Storage Root ◽  
Storage Roots ◽  
Specific Expression ◽  
Storage Root Development ◽  
Fibrous Roots

Sweet potato is a tuberous root crop with strong environmental stress resistance. It is beneficial to study its storage root formation and stress responses to identify sweet potato stress- and storage-root-thickening-related regulators. Here, six conserved miRNAs (miR156g, miR157d, miR158a-3p, miR161.1, miR167d and miR397a) and six novel miRNAs (novel 104, novel 120, novel 140, novel 214, novel 359 and novel 522) were isolated and characterized in sweet potato. Tissue-specific expression patterns suggested that miR156g, miR157d, miR158a-3p, miR167d, novel 359 and novel 522 exhibited high expression in fibrous roots or storage roots and were all upregulated in response to storage-root-related hormones (indole acetic acid, IAA; zeaxanthin, ZT; abscisic acid, ABA; and gibberellin, GAs). The expression of miR156g, miR158a-3p, miR167d, novel 120 and novel 214 was induced or reduced dramatically by salt, dehydration and cold or heat stresses. Moreover, these miRNAs were all upregulated by ABA, a crucial hormone modulator in regulating abiotic stresses. Additionally, the potential targets of the twelve miRNAs were predicted and analyzed. Above all, these results indicated that these miRNAs might play roles in storage root development and/or stress responses in sweet potato as well as provided valuable information for the further investigation of the roles of miRNA in storage root development and stress responses.

scholarly journals Transcriptomic analysis of melon/squash graft junction reveals molecular mechanisms potentially underlying the graft union development

PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e12569
Author(s):  
Chuanqiang Xu ◽  
Ying Zhang ◽  
Mingzhe Zhao ◽  
Yiling Liu ◽  
Xin Xu ◽  
...  
Keyword(s):  
Molecular Mechanisms ◽  
Healing Process ◽  
Signal Transduction Pathway ◽  
Lignin Biosynthesis ◽  
Graft Healing ◽  
Oriental Melon ◽  
Future Production ◽  
Grafting Technique ◽  
Phenylpropanoid Biosynthesis ◽  
Transcriptional Changes

Oriental melon (Cucumis melo var. makuwa Makino) has become a widely planted horticultural crop in China especially in recent years and has been subjected to the grafting technique for the improvement of cultivation and stress resistance. Although grafting has a long history in horticulture, there is little known about the molecular mechanisms of the graft healing process in oriental melon. This study aims to reveal the molecular changes involved in the graft healing process. In the present work, anatomical observations indicated that the 2, 6, and 9 DAG were three critical stages for the graft healing and therefore, were selected for the subsequent high-throughput RNA-seq analysis. A total of 1,950 and 1,313 DEGs were identified by comparing IL vs. CA and CA vs. VB libraries, respectively. More DEGs in the melon scion exhibited abundant transcriptional changes compared to the squash rootstock, providing increased metabolic activity and thus more material basis for the graft healing formation in the scion. Several DEGs were enriched in the plant hormone signal transduction pathway, phenylpropanoid biosynthesis, and carbon metabolism. In addition, the results showed that concentrations of IAA, GA3, and ZR were induced in the graft junctions. In conclusion, our study determined that genes involved in the hormone-signaling pathway and lignin biosynthesis played the essential roles during graft healing. These findings expand our current understandings of the molecular basis of the graft junction formation and facilitate the improvement and success of melon grafting in future production.

Compensation Response of Drip-irrigated Sugar Beets (Beta vulgaris L.) to Different Water Deficits during Storage Root Development

2016 ◽  
Vol 42 (11) ◽  
pp. 1727
Author(s):  
Yang-Yang LI ◽  
Cong FEI ◽  
Jing CUI ◽  
Kai-Yong WANG ◽  
Fu-Yu MA ◽  
...  
Keyword(s):  
Beta Vulgaris ◽  
Root Development ◽  
Storage Root ◽  
Sugar Beets ◽  
Water Deficits ◽  
Storage Root Development
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