scholarly journals An automated framework for high-throughput predictions of NMR chemical shifts within liquid solutions

Author(s):  
Rasha Atwi ◽  
Ying Chen ◽  
Kee Sung Han ◽  
Karl Mueller ◽  
Vijayakumar Murugesan ◽  
...  

Abstract Identifying stable speciation in multicomponent liquid solutions is of fundamental importance to areas ranging from electrochemistry to organic chemistry and biomolecular systems. However, elucidating this complex solvation environment is a daunting task even when using advanced experimental and computational techniques. Here, we introduce a fully automated, high-throughput computational framework for the accurate and robust prediction of stable species present in liquid solutions by computing the nuclear magnetic resonance (NMR) chemical shifts of molecules. The framework automatically extracts and categorizes hundreds of thousands of atomic clusters from classical molecular dynamics (CMD) simulations to identify the most stable speciation in the solution and calculate their NMR chemical shifts via DFT calculations. Additionally, the framework creates an output database of computed chemical shifts for liquid solutions across a wide chemical and parameter space. This task can be infeasible experimentally and challenging using conventional computational methods. To demonstrate the capabilities of our framework, we compare our computational results to experimental measurements for a complex test case of magnesium bis(trifluoromethanesulfonyl)imide Mg(TFSI)2 salt in dimethoxyethane (DME) solvent, which is a common electrolyte system for Mg-based batteries. Our extensive benchmarking and analysis of the Mg2+ solvation structural evolutions reveal critical factors such as the effect of force field parameters that influence the accuracy of NMR chemical shift predictions in liquid solutions. Furthermore, we show how the framework reduces the efforts of performing and managing over 300 13C and 600 1H DFT chemical shift predictions to a single submission procedure. By enabling more efficient and accurate high-throughput computations of NMR chemical shifts, our approach can accelerate theory-guided design of liquid solutions for various applications.

2020 ◽  
Vol 49 (45) ◽  
pp. 16453-16463 ◽  
Author(s):  
Winn Huynh ◽  
Matthew P. Conley

The origin in deshielding of 29Si NMR chemical shifts in R3Si–X, where X = H, OMe, Cl, OTf, [CH6B11X6], toluene, and OX (OX = surface oxygen), as well as iPr3Si+ and Mes3Si+ were studied using DFT methods.


1996 ◽  
Vol 74 (7) ◽  
pp. 1329-1334 ◽  
Author(s):  
Jennifer L. Mueller ◽  
Martin S. Gibson ◽  
J. Stephen Hartman

Carbon-13 chemical shifts of alkene carbons are observed in the ranges 78–109 ppm (Cα) and 154–164 ppm (Cβ) for a series of 11 2-acylidene-3,5-diaryl-2,3-dihydro-1,3,4-thiadiazoles, 3 2-acylidene-3-alkyl-2,3-dihydrobenzothiazoles, and 2 2-acylidene-3-alkyl-2,3-dihydrobenzoselenazoles of known geometry, indicating appreciable charge polarization in these compounds as in other push–pull olefins. Substitution that promotes more extensive charge delocalization results in the Cα signal shifting to the higher-frequency end of the chemical shift range. The observed shifts are compared with those calculated according to the Pretsch scheme. Key words: carbon-13 NMR, chemical shifts, push–pull olefins, 1,3,4-thiadiazoles, benzothiazoles, benzoselenazoles.


2015 ◽  
Vol 17 (35) ◽  
pp. 23183-23194 ◽  
Author(s):  
Bogdan A. Marekha ◽  
Oleg N. Kalugin ◽  
Marc Bria ◽  
Abdenacer Idrissi

Competition between ion solvation and association in mixtures of imidazolium ionic liquids and molecular solvents can be systematically addressed by the analysis of relative chemical shift variation with mixture composition.


1982 ◽  
Vol 60 (5) ◽  
pp. 596-600 ◽  
Author(s):  
Raj. K. Chadha ◽  
Jack M. Miller

13C nmr chemical shifts are reported for some aromatic and aliphatic tellurium compounds. For a given organic group, the shift of the C1 atom varies in the order [Formula: see text], as expected from electronegative considerations. The C2 atom experiences an opposite trend while the C3 and C4 atoms of the ring experience smaller changes. The chemical shifts of para-substituted aromatic tellurium compounds do not show additivity of contributions from the substituents.


2006 ◽  
Vol 1 (11) ◽  
pp. 1934578X0600101
Author(s):  
Pawan K. Agrawal ◽  
Chandan Agrawal ◽  
Shravan Agrawal

The 13C NMR resonances corresponding to the C-Me group of C-6 and/or C-8 C-methylated-flavonoids absorb between 6.7–10.0 ppm and typically between 6.7–8.7 ppm. A comparative 13C NMR study reflects that the 13C NMR chemical shifts reported for 6-hydroxy-5-methyl-3′,4′,5′-trimethoxyaurone-4-O-α-L-rhamnoside from Pterocarpus santalinus and 8-C-methyl-5,7,2′,4′- tetramethoxyflavanone from Terminalia alata are inconsistent with the assigned structures, and therefore need reconsideration.


Molecules ◽  
2019 ◽  
Vol 24 (12) ◽  
pp. 2290 ◽  
Author(s):  
Saima H. Mari ◽  
Panayiotis C. Varras ◽  
Atia-tul-Wahab ◽  
Iqbal M. Choudhary ◽  
Michael G. Siskos ◽  
...  

Detailed solvent and temperature effects on the experimental 1H-NMR chemical shifts of the natural products chrysophanol (1), emodin (2), and physcion (3) are reported for the investigation of hydrogen bonding, solvation and conformation effects in solution. Very small chemical shift of │Δδ│ < 0.3 ppm and temperature coefficients │Δδ/ΔΤ│ ≤ 2.1 ppb/K were observed in DMSO-d6, acetone-d6 and CDCl3 for the C(1)–OH and C(8)–OH groups which demonstrate that they are involved in a strong intramolecular hydrogen bond. On the contrary, large chemical shift differences of 5.23 ppm at 298 K and Δδ/ΔΤ values in the range of −5.3 to −19.1 ppb/K between DMSO-d6 and CDCl3 were observed for the C(3)–OH group which demonstrate that the solvation state of the hydroxyl proton is a key factor in determining the value of the chemical shift. DFT calculated 1H-NMR chemical shifts, using various functionals and basis sets, the conductor-like polarizable continuum model, and discrete solute-solvent hydrogen bond interactions, were found to be in very good agreement with the experimental 1H-NMR chemical shifts even with computationally less demanding level of theory. The 1H-NMR chemical shifts of the OH groups which participate in intramolecular hydrogen bond are dependent on the conformational state of substituents and, thus, can be used as molecular sensors in conformational analysis. When the X-ray structures of chrysophanol (1), emodin (2), and physcion (3) were used as input geometries, the DFT-calculated 1H-NMR chemical shifts were shown to strongly deviate from the experimental chemical shifts and no functional dependence could be obtained. Comparison of the most important intramolecular data of the DFT calculated and the X-ray structures demonstrate significant differences for distances involving hydrogen atoms, most notably the intramolecular hydrogen bond O–H and C–H bond lengths which deviate by 0.152 tο 0.132 Å and 0.133 to 0.100 Å, respectively, in the two structural methods. Further differences were observed in the conformation of –OH, –CH3, and –OCH3 substituents.


2020 ◽  
Vol 11 (12) ◽  
pp. 3180-3191 ◽  
Author(s):  
Jie Li ◽  
Kochise C. Bennett ◽  
Yuchen Liu ◽  
Michael V. Martin ◽  
Teresa Head-Gordon

UCBShift predicts NMR chemical shifts of proteins that exceeds accuracy of other popular chemical shift predictors on real-world data sets.


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