scholarly journals Using Isozyme Polymorphisms for Identifying and Assessing Genetic Variation in Cultivated Pawpaw [Asimina triloba (L.) Dunal]

1997 ◽  
Vol 122 (4) ◽  
pp. 504-511 ◽  
Author(s):  
Hongwen Huang ◽  
Desmond R. Layne ◽  
R. Neal Peterson
Keyword(s):  
Genetic Variation ◽  
Cultivar Identification ◽  
Allozyme Variation ◽  
Breeding Systems ◽  
Pairwise Comparisons ◽  
Shikimate Dehydrogenase ◽  
Woody Perennials ◽  
Asimina Triloba ◽  
Nei's Distance ◽  
Polymorphic Enzymes

The utility of isozyme phenotypes for identifying and determining genetic variation in pawpaw cultivars was studied using isoelectric focusing in thin-layer polyacrylamide gels. Based on a sample of 32 clones (cultivars and advanced selections) and 23 enzyme systems, 7 enzymes were found to be polymorphic, involving 9 polymorphic loci [acid phosphatase (ACP), dihydrolipoamide dehydrogenase (DDH), malic enzyme (ME), phosphoglucoisomerase (PGI), phosphoglucomutase (PGM), peroxidase (PRX), and shikimate dehydrogenase (SKD)]. Altogether these 9 loci and 32 clones yielded 28 multi-locus isozymic phenotypes useful for cultivar identification; 24 of the 32 clones were uniquely identified. The allozyme variation in these clones has the average of other long-lived woody perennials of widespread geographic range in temperate regions with insect-pollinated outcrossing breeding systems, secondary asexual reproduction, and animal-dispersed seed. Genetic differentiation among these pawpaw clones, measured by Nei's distance, D, was substantial: 496 pairwise comparisons of genetic distance among the 32 clones indicated that they differed on average of D = 0.068 ± 0.04 and ranged from 0 to 0.188. Cluster analysis (UPGMA) produced a most likely division of the 32 clones into 7 groups; however, these groups did not conform to known pedigree relations. Additional polymorphic enzymes are needed for accurate allozyme-based genetic discrimination.

Intra- and interspecific allozyme variation in eucalypts from the spotted gum group, Corymbia, section 'Politaria' (Myrtaceae)

2000 ◽  
Vol 13 (4) ◽  
pp. 491 ◽  
Author(s):  
M. W. McDonald ◽  
P. A. Butcher ◽  
J. C. Bell ◽  
J. S. Larmour
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Genetic Differentiation ◽  
Related Species ◽  
Allozyme Variation ◽  
Geographic Range ◽  
Breeding Systems ◽  
Closely Related Species ◽  
Tropical Regions ◽  
Corymbia Citriodora

The distribution of genetic variation within and among species inCorymbia section‘Politaria’ was examined using allozymes.This section consists of four species,Corymbia citriodora (Hook.) K.D.Hill & L.A.S.Johnson, C. maculata (Hook.) K.D.Hill & L.A.S.Johnson, C. henryi (Blake) K.D.Hill & L.A.S.Johnson and C. variegata (F.Muell.) K.D.Hill & L.A.S.Johnson, which are of commercial interest for plantation and farmforestry. Thirty populations representing the species’ range-widedistributions were studied, extending from upland tropical regions of northQueensland, south to eastern Victoria. Despite relatively low allozymedivergence between species, there was a relationship between geographicdistribution patterns of populations and allozyme variation. The section wasshown to comprise very closely related species with only 15% of thetotal genetic diversity attributed to differences between species. Twodistinct genetic alliances were evident:C. maculata–C. henryi andC. citriodora–C. variegata.Corymbia citriodora andC. variegata, however, could not be distinguished bytheir allozyme profiles. The lack of genetic differentiation between thesetaxa suggests that they represent one species composed of two chemical races.Corymbia maculata and C. henryiwere shown to be closely allied but genetically distinct.Corymbia henryi had the highest genetic diversity in thegroup and lowest differentiation among populations, whileC. maculata had the lowest diversity but the highestgenetic differentiation among populations. There was evidence ofisolation-by-distance among populations ofC. citriodora, C. maculata andC. variegata but not in C. henryi,which has a smaller geographic range. The inclusion in the study ofC. torelliana (F.Muell.) K.D.Hill & L.A.S.Johnson asan outgroup accentuated the small genetic differences between species in thegroup. The patterns of genetic diversity are discussed in relation to thespecies’ taxonomic relationships, breeding systems and utilisation.

Corrigendum to: Intra- and interspecific allozyme variation in eucalypts from the spotted gum group, Corymbia, section 'Politaria' (Myrtaceae)

2003 ◽  
Vol 16 (5) ◽  
pp. 643 ◽  
Author(s):  
M. W. McDonald ◽  
P. A. Butcher ◽  
J. S. Larmour ◽  
J. C. Bell
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Genetic Differentiation ◽  
Related Species ◽  
Allozyme Variation ◽  
Geographic Range ◽  
Breeding Systems ◽  
Closely Related Species ◽  
Tropical Regions ◽  
Corymbia Citriodora

The distribution of genetic variation within and among species inCorymbia section‘Politaria’ was examined using allozymes.This section consists of four species,Corymbia citriodora (Hook.) K.D.Hill & L.A.S.Johnson, C. maculata (Hook.) K.D.Hill & L.A.S.Johnson, C. henryi (Blake) K.D.Hill & L.A.S.Johnson and C. variegata (F.Muell.) K.D.Hill & L.A.S.Johnson, which are of commercial interest for plantation and farmforestry. Thirty populations representing the species’ range-widedistributions were studied, extending from upland tropical regions of northQueensland, south to eastern Victoria. Despite relatively low allozymedivergence between species, there was a relationship between geographicdistribution patterns of populations and allozyme variation. The section wasshown to comprise very closely related species with only 15% of thetotal genetic diversity attributed to differences between species. Twodistinct genetic alliances were evident:C. maculata–C. henryi andC. citriodora–C. variegata.Corymbia citriodora andC. variegata, however, could not be distinguished bytheir allozyme profiles. The lack of genetic differentiation between thesetaxa suggests that they represent one species composed of two chemical races.Corymbia maculata and C. henryiwere shown to be closely allied but genetically distinct.Corymbia henryi had the highest genetic diversity in thegroup and lowest differentiation among populations, whileC. maculata had the lowest diversity but the highestgenetic differentiation among populations. There was evidence ofisolation-by-distance among populations ofC. citriodora, C. maculata andC. variegata but not in C. henryi,which has a smaller geographic range. The inclusion in the study ofC. torelliana (F.Muell.) K.D.Hill & L.A.S.Johnson asan outgroup accentuated the small genetic differences between species in thegroup. The patterns of genetic diversity are discussed in relation to thespecies’ taxonomic relationships, breeding systems and utilisation.

scholarly journals POPULATION GENETICS OF ALLOZYME VARIATION IN NEUROSPORA INTERMEDIA

Genetics ◽  
1975 ◽  
Vol 80 (4) ◽  
pp. 785-805
Author(s):  
P T Spieth
Keyword(s):  
Genetic Variation ◽  
Vegetative Reproduction ◽  
Vascular Plant ◽  
Natural Populations ◽  
Allozyme Variation ◽  
Regular Feature ◽  
Local Populations ◽  
Neurospora Intermedia ◽  
Pattern Of Variation ◽  
High Level

ABSTRACT Electrophoretically detectable variation in the fungus Neurospora intermedia has been surveyed among isolates from natural populations in Malaya, Papua, Australia and Florida. The principal result is a pattern of genetic variation within and between populations that is qualitatively no different than the well documented patterns for Drosophila and humans. In particular, there is a high level of genetic variation, the majority of which occurs at the level of local populations. Evidence is presented which argues that N. intermedia has a population structure analogous to that of an annual vascular plant with a high level of vegetative reproduction. Sexual reproduction appears to be a regular feature in the biology of the species. Substantial heterokaryon function seems unlikely in natural populations of N. intermedia. Theoretical considerations concerning the mechanisms underlying the observed pattern of variation most likely should be consistent with haploid selection theory. The implications of this constraint upon the theory are discussed in detail, leading to the presentation of a model based upon the concept of environmental heterogeneity. The essence of the model, which is equally applicable to haploid and diploid situations, is a shifting distribution of multiple adaptive niches among local populations such that a given population has a small net selective pressure in favor of one allele or another, depending upon its particular distribution of niches. Gene flow among neighboring populations with differing net selective pressures is postulated as the principal factor underlying intrapopulational allozyme variation.

Direct comparison of levels of genetic variation in tomato detected by a GACA-containing microsatellite probe and by random amplified polymorphic DNA

Genome ◽  
1994 ◽  
Vol 37 (3) ◽  
pp. 375-381 ◽  
Author(s):  
W. Rus-Kortekaas ◽  
M. J. M. Smulders ◽  
P. Arens ◽  
B. Vosman
Keyword(s):  
Tissue Culture ◽  
Genetic Variation ◽  
Somaclonal Variation ◽  
Random Amplified Polymorphic Dna ◽  
Dna Fingerprint ◽  
Pairwise Comparisons ◽  
Lycopersicon Pennellii ◽  
Lycopersicon Species ◽  
Polymorphic Bands ◽  
Simple Sequence

In this study, a direct comparison was made of the ability of four selected random amplified polymorphic DNA (RAPD) primers and a GACA-containing microsatellite probe to detect genetic variation in Lycopersicon. Of the 89 RAPD primers initially tested, 85 showed differences between a representative of Lycopersicon pennellii and L. esculentum, but only 4 distinguished among three L. esculentum cultivars. These four primers were subsequently tested on representatives of six Lycopersicon species. In pairwise comparisons of species, all or 14 of the 15 combinations could be distinguished by single primers. When the primers were tested on 15 L. esculentum cultivars, 90 of the 105 combinations could be distinguished by the four primers together. Finally, none of 118 tested primers showed reproducible differences among calli or progeny of régénérants from tissue culture, although some of the plants had inherited morphological mutations. The probe pWVA16, which detects GACA-containing microsatellites, could distinguish in TaqI-digested DNA the representatives of Lycopersicon species as well as all the L. esculentum cultivars tested. The probe was unable to detect polymorphisms among calli and the progeny of regenerants from tissue culture. An analysis of the results showed that the four selected RAPD primers were able to detect polymorphic bands among species at a frequency of 80%, and among cultivars at a frequency of 44%. In contrast, the microsatellite probe detected polymorphic bands at a frequency of 100 and 95%, respectively. The GACA-containing probe did not detect any common bands among the representatives of the six species, while band sharing with RAPDs was 48%. These results indicate that the two methods detect two types of DNA that differ in their degree of variability.Key words: DNA fingerprint, RAPD, simple sequence, somaclonal variation, tissue culture.

scholarly journals POPULATION GENETIC CONSEQUENCES OF FEEDING HABITS IN SOME FOREST LEPIDOPTERA

Genetics ◽  
1979 ◽  
Vol 92 (3) ◽  
pp. 1005-1021
Author(s):  
Charles Mitter ◽  
Douglas J Futuyma
Keyword(s):  
Genetic Variation ◽  
Environmental Heterogeneity ◽  
Feeding Habits ◽  
Functional Relation ◽  
Allozyme Variation ◽  
Unexpected Result ◽  
Polymorphic Loci ◽  
Allozyme Loci ◽  
Race Formation ◽  
Relationship Of

ABSTRACT By surveying variation at allozyme loci in several phytophagous lepidopteran species (Geometridae), we have tested two hypotheses about the relationship of genetic variation to environmental heterogeneity: (1) that allozyme polymorphisms may exist because of associations between genotypes and "niches" (different host plants, in this instance), and (2) that the overall genetic variation of a species is correlated with environmental heterogeneity (or breadth of the species' overall ecological niche) .—Genetic differentiation among samples of oligophagous or polyphagous species taken from different host species was observed in one of three species, at only one of seven polymorphic loci. The data thus provide no evidence for pronounced genetic sub-structuring, or "host race" formation in these sexually reproducing species, although host plant-genotype associations in a parthenogenetic moth give evidence of the potential for diversifying selection.—In a comparison of allozyme variation in polyphagous ("generalized") and oligophagous ("specialized") species, heterozygosity appeared to be higher in specialized species, at all polymorphic loci but one. I t is possible that this unexpected result arises from a functional relation between breadth of diet and genetic variation.

Seasonal variation and clonal selection in cyclically parthenogenetic rose aphids (Macrosiphum rosae)

1985 ◽  
Vol 27 (2) ◽  
pp. 224-232 ◽  
Author(s):  
L. R. Rhomberg ◽  
S. Joseph ◽  
R. S. Singh
Keyword(s):  
Genetic Variation ◽  
Seasonal Variation ◽  
Clonal Selection ◽  
Natural Populations ◽  
Allozyme Variation ◽  
Polymorphic Loci ◽  
Esterase Loci ◽  
Allozyme Loci ◽  
Macrosiphum Rosae ◽  
Asexual Cycle

Patterns of geographic and seasonal genetic variation were assessed in natural populations of cyclically parthenogenetic rose aphids Macrosiphum rosae (L.). Nine populations were studied for a red–green colour morph and 30 allozyme loci (20 coding for enzymes and 10 for abundant proteins). Genetic variation was found at 5 of 20 enzyme loci (20%); all 10 abundant proteins proved monomorphic. The average heterozygosity was 4.3%. At some polymorphic loci genotypic frequencies showed significant deviations from Hardy–Weinberg proportions. Six local populations from Hamilton, Ontario, were studied for seasonal variation at the colour locus and at two polymorphic esterase loci (Est-2 and Est-4). All three loci showed large changes in genotypic frequencies over the season during the asexual cycle, but only for Est-4 were changes consistent among populations. This locus undergoes a regular seasonal cycle, the directional changes during the asexual phase presumably being balanced by changes during the sexual phase. The frequencies of three-locus genotypes within each locality fluctuated dramatically over the course of a season, reflecting the domination of local infestations by a few particularly successful clones. We speculate that because of such clonal competition followed by extensive migration, much of the selectively neutral variation is purged from aphid populations. The remaining polymorphic loci, which are mostly di- or tri-allelic, are subject to balancing natural selection at the gene or at closely linked loci. The Est-4 in rose aphids is an example of such a selectively maintained polymorphism.Key words: aphids, allozyme variation, seasonal variation, parthenogenesis, clonal selection, population structure.

Very Low Fruit : Flower Ratios in Grevillea (Proteaceae) are Independent of Breeding System

1998 ◽  
Vol 46 (4) ◽  
pp. 465 ◽  
Author(s):  
Luise Hermanutz ◽  
David Innes ◽  
Andrew Denham ◽  
Robert Whelan
Keyword(s):  
Fruit Set ◽  
Pollen Limitation ◽  
Breeding Systems ◽  
Mature Fruit ◽  
Closely Related Species ◽  
Woody Perennials ◽  
The Family ◽  
Self Compatibility ◽  
Species Specific

Members of the family Proteaceae have extremely low mature fruit : flower (FR : FL) ratios (range 0.001–0.163) compared with other temperate, hermaphroditic, woody perennials. Sutherland’s (1986) survey of FR : FL ratios indicated that compatibility was an important factor explaining levels of fruit set. The role of compatibility in regulating FR : FL ratios was tested in five closely related species of Grevillea (Proteaceae). Species-specific compatibility was compared using the self-compatibility index (SI = ratio of selfed fruit set to crossed fruit set) calculated at fruit initiation to minimise the confounding effect of other post-fertilisation fruit losses, such as inbreeding depression and pre-dispersal predation. Fruit : flower ratios at initiation ranged from 0.041–0.249, and at maturity 0.015–0.096. Grevillea species showed highly variable breeding systems: G. linearifolia was self-incompatible (SI = 0.003), G. sphacelata, G. mucronulata, and G. oleoides were partially self-compatible (SI = 0.07–0.28) and G. longifolia was self-compatible (SI = 0.61). Intrapopulation variability in the level of self-incompatibility was high in all species but G. linearifolia. The correlation between SI and FR: FL ratios was non-significant, indicating that compatibility has a minimal effect on fruit set in the Grevillea species studied, and that these data, together with other data on proteaceous species do not support trends observed in Sutherland’s survey. Low FR : FL ratios resulted from of a combination of pollen limitation, and high levels of flower and fruit predation.

Allozyme variation of the endangered Florida torreya (Torreyataxifolia)

1993 ◽  
Vol 23 (12) ◽  
pp. 2598-2602 ◽  
Author(s):  
Mark W. Schwartz
Keyword(s):  
Genetic Variation ◽  
Spatial Pattern ◽  
Genetic Information ◽  
Allelic Variation ◽  
Polymorphic Locus ◽  
Allozyme Variation ◽  
Soil Types ◽  
In The Wild ◽  
Apalachicola River ◽  
The 1950S

Torreyataxifolia Arn. is an endangered conifer restricted to ravine slopes along the Apalachicola River in northern Florida. The species began a decline in the 1950s that has resulted in fewer than 1500 trees remaining extant in the wild. Allelic variation was examined for 189 trees throughout its range. The species is characterized by low overall levels of genetic variation: seven of 20 loci were variable; each polymorphic locus had no more than two alleles; mean heterozygosity (He) was 0.064. Over 78% of this measured genetic variation was found within populations; no spatial pattern was detected in the remaining variation between populations within drainage regions, across drainage regions, or across soil types. This genetic information was used to plan tissue collection for a permanent offsite population.

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