Allozyme variation of the endangered Florida torreya (Torreyataxifolia)

1993 ◽  
Vol 23 (12) ◽  
pp. 2598-2602 ◽  
Author(s):  
Mark W. Schwartz
Keyword(s):  
Genetic Variation ◽  
Spatial Pattern ◽  
Genetic Information ◽  
Allelic Variation ◽  
Polymorphic Locus ◽  
Allozyme Variation ◽  
Soil Types ◽  
In The Wild ◽  
Apalachicola River ◽  
The 1950S

Torreyataxifolia Arn. is an endangered conifer restricted to ravine slopes along the Apalachicola River in northern Florida. The species began a decline in the 1950s that has resulted in fewer than 1500 trees remaining extant in the wild. Allelic variation was examined for 189 trees throughout its range. The species is characterized by low overall levels of genetic variation: seven of 20 loci were variable; each polymorphic locus had no more than two alleles; mean heterozygosity (He) was 0.064. Over 78% of this measured genetic variation was found within populations; no spatial pattern was detected in the remaining variation between populations within drainage regions, across drainage regions, or across soil types. This genetic information was used to plan tissue collection for a permanent offsite population.

scholarly journals Development of microsatellite markers in the razor clam Solen marginatus (Bivalvia: Solenidae)

2007 ◽  
Vol 87 (4) ◽  
pp. 977-978 ◽  
Author(s):  
Marta Francisco-Candeira ◽  
Ana González-Tizón ◽  
Miguel A. Varela ◽  
Andrés Martínez-Lage
Keyword(s):  
Population Structure ◽  
Genetic Variation ◽  
Microsatellite Loci ◽  
Allelic Variation ◽  
Issr Markers ◽  
Enriched Library ◽  
Sequence Repeat ◽  
Razor Clam ◽  
Future Studies ◽  
In The Wild

Four microsatellite loci in the razor clam Solen marginatus are described. Loci were isolated from the sequences of intersimple sequence repeat (ISSR) markers and an enriched library. Detailed analysis of these sequences led to the design of eight primer pairs. Allelic variation was assessed in 20 individuals from Redondela, Spain. The genetic variation observed in the markers presented here will be useful for future studies on the population structure of Solen marginatus in the wild and for aquaculture of this species.

Genetic Analysis of Chinese Cucumber Collections in the U.S. National Germplasm Collection

HortScience ◽  
1998 ◽  
Vol 33 (3) ◽  
pp. 534e-534 ◽  
Author(s):  
J. Staub ◽  
Felix Sequen ◽  
Tom Horejsi ◽  
Jin Feng Chen
Keyword(s):  
Genetic Diversity ◽  
Principal Component Analysis ◽  
Genetic Variation ◽  
Genetic Analysis ◽  
Allelic Variation ◽  
Germplasm Collection ◽  
Principal Component ◽  
Isozyme Loci ◽  
National Plant Germplasm System ◽  
The U.S

Genetic variation in cucumber accessions from China was assessed by examining variation at 21 polymorphic isozyme loci. Principal component analysis of allelic variation allowed for the depiction of two distinct groupings of Chinese accessions collected in 1994 and 1996 (67 accessions). Six isozyme loci (Gpi, Gr, Mdh-2, Mpi-2, Pep-gl, and Pep-la) were important in elucidating these major groups. These groupings were different from a single grouping of Chinese 146 accessions acquired before 1994. Allelic variation in Chinese accessions allowed for comparisons with other accessions in the U.S. National Plant Germplasm System (U.S. NPGS) collection grouped by continent and sub-continent. When Chinese accessions taken collectively were compared with an array of 853 C. sativus U.S. NPGS accessions examined previously, relationships differed between accessions grouped by country or subcontinent. Data indicate that acquisition of additional Chinese and Indian cucumber accessions would be strategically important for increasing genetic diversity in the U.S. NPGS cucumber collection.

scholarly journals POPULATION GENETICS OF ALLOZYME VARIATION IN NEUROSPORA INTERMEDIA

Genetics ◽  
1975 ◽  
Vol 80 (4) ◽  
pp. 785-805
Author(s):  
P T Spieth
Keyword(s):  
Genetic Variation ◽  
Vegetative Reproduction ◽  
Vascular Plant ◽  
Natural Populations ◽  
Allozyme Variation ◽  
Regular Feature ◽  
Local Populations ◽  
Neurospora Intermedia ◽  
Pattern Of Variation ◽  
High Level

ABSTRACT Electrophoretically detectable variation in the fungus Neurospora intermedia has been surveyed among isolates from natural populations in Malaya, Papua, Australia and Florida. The principal result is a pattern of genetic variation within and between populations that is qualitatively no different than the well documented patterns for Drosophila and humans. In particular, there is a high level of genetic variation, the majority of which occurs at the level of local populations. Evidence is presented which argues that N. intermedia has a population structure analogous to that of an annual vascular plant with a high level of vegetative reproduction. Sexual reproduction appears to be a regular feature in the biology of the species. Substantial heterokaryon function seems unlikely in natural populations of N. intermedia. Theoretical considerations concerning the mechanisms underlying the observed pattern of variation most likely should be consistent with haploid selection theory. The implications of this constraint upon the theory are discussed in detail, leading to the presentation of a model based upon the concept of environmental heterogeneity. The essence of the model, which is equally applicable to haploid and diploid situations, is a shifting distribution of multiple adaptive niches among local populations such that a given population has a small net selective pressure in favor of one allele or another, depending upon its particular distribution of niches. Gene flow among neighboring populations with differing net selective pressures is postulated as the principal factor underlying intrapopulational allozyme variation.

scholarly journals POPULATION GENETIC CONSEQUENCES OF FEEDING HABITS IN SOME FOREST LEPIDOPTERA

Genetics ◽  
1979 ◽  
Vol 92 (3) ◽  
pp. 1005-1021
Author(s):  
Charles Mitter ◽  
Douglas J Futuyma
Keyword(s):  
Genetic Variation ◽  
Environmental Heterogeneity ◽  
Feeding Habits ◽  
Functional Relation ◽  
Allozyme Variation ◽  
Unexpected Result ◽  
Polymorphic Loci ◽  
Allozyme Loci ◽  
Race Formation ◽  
Relationship Of

ABSTRACT By surveying variation at allozyme loci in several phytophagous lepidopteran species (Geometridae), we have tested two hypotheses about the relationship of genetic variation to environmental heterogeneity: (1) that allozyme polymorphisms may exist because of associations between genotypes and "niches" (different host plants, in this instance), and (2) that the overall genetic variation of a species is correlated with environmental heterogeneity (or breadth of the species' overall ecological niche) .—Genetic differentiation among samples of oligophagous or polyphagous species taken from different host species was observed in one of three species, at only one of seven polymorphic loci. The data thus provide no evidence for pronounced genetic sub-structuring, or "host race" formation in these sexually reproducing species, although host plant-genotype associations in a parthenogenetic moth give evidence of the potential for diversifying selection.—In a comparison of allozyme variation in polyphagous ("generalized") and oligophagous ("specialized") species, heterozygosity appeared to be higher in specialized species, at all polymorphic loci but one. I t is possible that this unexpected result arises from a functional relation between breadth of diet and genetic variation.

scholarly journals The molecular through ecological genetics of abnormal abdomen. IV. Components of genetic variation in a natural population of Drosophila mercatorum.

Genetics ◽  
1992 ◽  
Vol 130 (2) ◽  
pp. 355-366
Author(s):  
H Hollocher ◽  
A R Templeton ◽  
R DeSalle ◽  
J S Johnston
Keyword(s):  
Genetic Variation ◽  
Natural Population ◽  
Allelic Variation ◽  
Natural Populations ◽  
Developmental Time ◽  
Ecological Genetics ◽  
Adult Longevity ◽  
Genetic Determinants ◽  
Drosophila Mercatorum ◽  
Y Chromosomes

Abstract Natural populations of Drosophila mercatorum are polymorphic for a phenotypic syndrome known as abnormal abdomen (aa). This syndrome is characterized by a slow-down in egg-to-adult developmental time, retention of juvenile abdominal cuticle in the adult, increased early female fecundity, and decreased adult longevity. Previous studies revealed that the expression of this syndrome in females is controlled by two closely linked X chromosomal elements: the occurrence of an R1 insert in a third or more of the X-linked 28S ribosomal genes (rDNA), and the failure of replicative selection favoring uninserted 28S genes in larval polytene tissues. The expression of this syndrome in males in a laboratory stock was associated with the deletion of the rDNA normally found on the Y chromosome. In this paper we quantify the levels of genetic variation for these three components in a natural population of Drosophila mercatorum found near Kamuela, Hawaii. Extensive variation is found in the natural population for both of the X-linked components. Moreover, there is a significant association between variation in the proportion of R1 inserted 28S genes with allelic variation at the underreplication (ur) locus such that both of the necessary components for aa expression in females tend to cosegregate in the natural population. Accordingly, these two closely linked X chromosomal elements are behaving as a supergene in the natural population. Because of this association, we do not believe the R1 insert to be actively transposing to an appreciable extent. The Y chromosomes extracted from nature are also polymorphic, with 16% of the Ys lacking the Y-specific rDNA marker. The absence of this marker is significantly associated with the expression of aa in males. Hence, all three of the major genetic determinants of the abnormal abdomen syndrome are polymorphic in this natural population.

Teaching the Teachers the Genetics of Learning: An Application of the Mixed Blessings Model

2021 ◽  
Author(s):  
Sally A. Larsen ◽  
Callie Little
Keyword(s):  
Genetic Variation ◽  
Teacher Perceptions ◽  
Genetic Information ◽  
Teaching Practice ◽  
Genetic Research ◽  
Genetic Influences ◽  
School Contexts ◽  
Genetics Research ◽  
New Directions ◽  
And Behavior

Decades of educational genetics research has highlighted that differences in academic achievement are partly explained by genetic variation between individuals. Consequently, there is ongoing discussion about whether genetic influences on educationally-related traits should be more widely acknowledged in schools and communicated specifically to teachers. Nonetheless, there is little research on how teachers might interpret such information, and how it might alter their perceptions of the students they teach, or their teaching practice. In this review we draw on the mixed blessings model proposed by Haslam and Kvaale (2015) as a framework for defining both positive and negative repercussions of disseminating the findings of educational genetic research to teachers. We discuss research examining teacher perceptions of student ability and behavior, and findings outlining perceptions of psychological disorders when genetic explanations are invoked. We conclude by proposing new directions for research designed to better understand interpretations of genetic information in school contexts.

scholarly journals Localized Hypermutation is the Major Driver of Meningococcal Genetic Variability during Persistent Asymptomatic Carriage

mBio ◽  
2020 ◽  
Vol 11 (2) ◽  
Author(s):  
Luke R. Green ◽  
Ali A. Al-Rubaiawi ◽  
Mohammad A. R. M. Al-Maeni ◽  
Odile B. Harrison ◽  
Matthew Blades ◽  
...  
Keyword(s):  
Genetic Variation ◽  
Gene Transfer ◽  
Outer Membrane ◽  
Antigenic Variation ◽  
Allelic Variation ◽  
Host Responses ◽  
Content Type ◽  
Type Iv ◽  
Asymptomatic Carriage ◽  
Genes Encoding

ABSTRACT Host persistence of bacteria is facilitated by mutational and recombinatorial processes that counteract loss of genetic variation during transmission and selection from evolving host responses. Genetic variation was investigated during persistent asymptomatic carriage of Neisseria meningitidis. Interrogation of whole-genome sequences for paired isolates from 25 carriers showed that de novo mutations were infrequent, while horizontal gene transfer occurred in 16% of carriers. Examination of multiple isolates per time point enabled separation of sporadic and transient allelic variation from directional variation. A comprehensive comparative analysis of directional allelic variation with hypermutation of simple sequence repeats and hyperrecombination of class 1 type IV pilus genes detected an average of seven events per carrier and 2:1 bias for changes due to localized hypermutation. Directional genetic variation was focused on the outer membrane with 69% of events occurring in genes encoding enzymatic modifiers of surface structures or outer membrane proteins. Multiple carriers exhibited directional and opposed switching of allelic variants of the surface-located Opa proteins that enables continuous expression of these adhesins alongside antigenic variation. A trend for switching from PilC1 to PilC2 expression was detected, indicating selection for specific alterations in the activities of the type IV pilus, whereas phase variation of restriction modification (RM) systems, as well as associated phasevarions, was infrequent. We conclude that asymptomatic meningococcal carriage on mucosal surfaces is facilitated by frequent localized hypermutation and horizontal gene transfer affecting genes encoding surface modifiers such that optimization of adhesive functions occurs alongside escape of immune responses by antigenic variation. IMPORTANCE Many bacterial pathogens coexist with host organisms, rarely causing disease while adapting to host responses. Neisseria meningitidis, a major cause of meningitis and septicemia, is a frequent persistent colonizer of asymptomatic teenagers/young adults. To assess how genetic variation contributes to host persistence, whole-genome sequencing and hypermutable sequence analyses were performed on multiple isolates obtained from students naturally colonized with meningococci. High frequencies of gene transfer were observed, occurring in 16% of carriers and affecting 51% of all nonhypermutable variable genes. Comparative analyses showed that hypermutable sequences were the major mechanism of variation, causing 2-fold more changes in gene function than other mechanisms. Genetic variation was focused on genes affecting the outer membrane, with directional changes in proteins responsible for bacterial adhesion to host surfaces. This comprehensive examination of genetic plasticity in individual hosts provides a significant new platform for rationale design of approaches to prevent the spread of this pathogen.

The potential impact of mining on population genetic variation in the Banded Ironstone Formation endemic Tetratheca erubescens (Elaeocarpaceae)

2019 ◽  
Vol 67 (3) ◽  
pp. 172 ◽  
Author(s):  
Siegfried L. Krauss ◽  
Janet M. Anthony
Keyword(s):  
Genetic Variation ◽  
Population Genetic ◽  
Allelic Variation ◽  
Continuous Distribution ◽  
Genetic Structuring ◽  
Expected Heterozygosity ◽  
Spatial Structuring ◽  
Genetic Clusters ◽  
Population Genetic Variation ◽  
Entire Distribution

Tetratheca erubescens is a narrowly endemic species including ~6300 plants restricted to a 2-km2 distribution on the south Koolyanobbing Range Banded Ironstone Formation (BIF) in Western Australia. A key objective of the present study was to characterise population genetic variation, and its spatial structuring across the entire distribution of T. erubescens, to enable a quantification of genetic variation that may be affected by proposed mining of the BIF. In total, 436 plants (~30 at each of 14 sites) from across the entire distribution were sampled, genotyped and scored for allelic variation at 11 polymorphic microsatellite loci. Fifty-nine alleles were detected (mean alleles per locus=5.36, range 2–10), and observed heterozygosity was low to moderate and typically lower than expected heterozygosity across all loci (mean observed heterozygosity (Ho)=0.41, mean expected heterozygosity (He)=0.48). Given the restricted distribution of T. erubescens, overall genetic structuring was surprisingly strong (overall FST=0.098). A range-wide spatial autocorrelation analysis indicated a significant positive genetic correlation at distances up to 450m, largely corresponding to the scale of more-or-less continuous distribution within each of two geographic clusters. In support, a STRUCTURE analysis identified an optimal number of genetic clusters as K=2, with assignment of individuals to one of two genetic clusters corresponding with the main geographic clusters. The genetic impact of proposed mining on T. erubescens was assessed on the basis of identifying plants within the proposed mine footprint (all plants from 4 of 14 sites). Repeating analyses of genetic variation after removal of these samples, and comparing to the complete dataset adjusted for sample size, resulted in the loss of one (very rare: overall frequency=0.001) allele (i.e. 58 of 59 alleles (98.3%) were recovered). All other parameters of genetic variation (mean Na, Ne, I, Ho, He, F) were unaffected. Consequently, although up to 22% of all plants fall within the mine footprint and, therefore, may be lost, <2% of alleles detected will be lost, and other genetic parameters remained unaffected. Although these results suggest that the proposed mining will result in a negligible impact on the assessed genetic variation and its spatial structuring in T. erubescens, further research on impacts to, and management of, quantitative genetic variation and key population genetic processes is required.

Genetic variation of rs7958311 in P2X7R gene is associated with the susceptibility and disease activity of ankylosing spondylitis

2019 ◽  
Vol 95 (1123) ◽  
pp. 251-257
Author(s):  
Zhipeng Pan ◽  
Xu Zhang ◽  
Yubo Ma ◽  
Shengqian Xu ◽  
Zongwen Shuai ◽  
...  
Keyword(s):  
Genetic Variation ◽  
Ankylosing Spondylitis ◽  
Protective Effect ◽  
Disease Activity ◽  
Allelic Variation ◽  
Activity Index ◽  
Disease Activity Index ◽  
Nucleotide Polymorphisms ◽  
Genotype Frequencies ◽  
Male Patients

ObjectivesTo describe association between the genetic variation of inflammation-associated gene, P2X7R, and ankylosing spondylitis (AS) susceptibility.MethodsFour single nucleotide polymorphisms (SNPs) of P2X7R gene were genotyped in 673 patients with AS and 687 healthy controls. Allele and genotype frequencies and different genetic models were performed to calculate ORs and 95% CIs, the demographic and clinical characteristics of patients were recorded. The data analyses were also conducted by sex.ResultsCompared with controls, genetic variation in rs7958311 but not the other three SNPs was statistically significant in female patients (χ2=6.907, p=0.032). Specifically, the P2X7R gene rs7958311 polymorphism A allele showed a protective effect in AS susceptibility (OR=0.704, p=0.049, pFDR=0.061). In addition, female individuals with GA and/or AA genotypes had a lower risk of having AS compared with those with GG genotype (GA vs GG: OR=0.446, p=0.012, pFDR=0.030; AA vs GG: OR=0.440, p=0.039, pFDR=0.061; GA/AA vs GG: OR=0.445, p=0.009, pFDR=0.030). Furthermore, individuals with A allele (ie, GA/AA vs GG) had a higher disease activity, including Bath Ankylosing Spondylitis Disease Activity Index (overall: Z=− 2.630, p=0.014; male: Z=− 2.243, p=0.025), Schober test (overall: Z=− 3.041, p<0.001; male: Z=− 2.243, p=0.025) and chest expansion (overall: Z=− 3.895, p=0.004; male: Z=− 2.403, p=0.016).ConclusionThe allelic variation of rs7958311 SNP in P2X7R gene may have a protective effect on AS susceptibility in females and is associated with disease activity in male patients.

Genetic analysis of populations of north-western Australian fish species

1993 ◽  
Vol 44 (5) ◽  
pp. 673 ◽  
Author(s):  
MS Johnson ◽  
DR Hebbert ◽  
MJ Moran
Keyword(s):  
Allelic Variation ◽  
Aldehyde Oxidase ◽  
Allozyme Variation ◽  
Clinal Variation ◽  
Electrophoretic Study ◽  
Allelic Frequencies ◽  
Consistent Picture ◽  
Australian Fish ◽  
Western Australian ◽  
North Western

Allozyme variation was used to investigate the genetic structure of Lutjanus sebae, Lethrinus nebulosus, Lethrinus choerorynchus, and Epinephelus multinotatus, which are components of a multispecies fishery off north-western Australia. Samples of each species were obtained from five or six localities, over a total distance of 1400-2080 km. Allelic variation was found at 13-16 loci in each species. The consistent picture to emerge was one of little genetic subdivision in all four species, with average values of FST ranging from 0.003 in L. sebae to 0.012 in E. multinotatus. Although there was statistically significant variation in allelic frequencies in three of the species, there were no clear geographical groupings of populations. With the possible exception of clinal variation for aldehyde oxidase in E. multinotatus, all heterogeneity of allelic frequencies was within the range that could easily be due to within-generation effects of selection. Thus, the allozyme data are consistent with the view that there are extensive connections of populations over large distances. The electrophoretic study also confirmed that, contrary to suggestions in the literature, L. nebulosus, L. choerorynchus, and Lethrinus laticaudis are reproductively isolated species.

Sign in / Sign up

Export Citation Format

Share Document