scholarly journals Deep-learning-driven event reconstruction applied to simulated data from a single Large-Sized Telescope of CTA

2021 ◽  
Author(s):  
Pietro Grespan ◽  
Mikael Jacquemont ◽  
Ruben Lopez-Coto ◽  
Tjark Miener ◽  
Daniel Nieto-Castaño ◽  
...  
Sensors ◽  
2021 ◽  
Vol 21 (12) ◽  
pp. 4155
Author(s):  
Bulent Ayhan ◽  
Chiman Kwan

Detecting nuclear materials in mixtures is challenging due to low concentration, environmental factors, sensor noise, source-detector distance variations, and others. This paper presents new results on nuclear material identification and relative count contribution (also known as mixing ratio) estimation for mixtures of materials in which there are multiple isotopes present. Conventional and deep-learning-based machine learning algorithms were compared. Realistic simulated data using Gamma Detector Response and Analysis Software (GADRAS) were used in our comparative studies. It was observed that a deep learning approach is highly promising.


2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Gilad Liberman ◽  
Benedikt A. Poser

AbstractModern sequences for Magnetic Resonance Imaging (MRI) trade off scan time with computational challenges, resulting in ill-posed inverse problems and the requirement to account for more elaborated signal models. Various deep learning techniques have shown potential for image reconstruction from reduced data, outperforming compressed sensing, dictionary learning and other advanced techniques based on regularization, by characterization of the image manifold. In this work we suggest a framework for reducing a “neural” network to the bare minimum required by the MR physics, reducing the network depth and removing all non-linearities. The networks performed well both on benchmark simulated data and on arterial spin labeling perfusion imaging, showing clear images while preserving sensitivity to the minute signal changes. The results indicate that the deep learning framework plays a major role in MR image reconstruction, and suggest a concrete approach for probing into the contribution of additional elements.


2020 ◽  
Vol 492 (4) ◽  
pp. 5023-5029 ◽  
Author(s):  
Niall Jeffrey ◽  
François Lanusse ◽  
Ofer Lahav ◽  
Jean-Luc Starck

ABSTRACT We present the first reconstruction of dark matter maps from weak lensing observational data using deep learning. We train a convolution neural network with a U-Net-based architecture on over 3.6 × 105 simulated data realizations with non-Gaussian shape noise and with cosmological parameters varying over a broad prior distribution. We interpret our newly created dark energy survey science verification (DES SV) map as an approximation of the posterior mean P(κ|γ) of the convergence given observed shear. Our DeepMass1 method is substantially more accurate than existing mass-mapping methods. With a validation set of 8000 simulated DES SV data realizations, compared to Wiener filtering with a fixed power spectrum, the DeepMass method improved the mean square error (MSE) by 11 per cent. With N-body simulated MICE mock data, we show that Wiener filtering, with the optimal known power spectrum, still gives a worse MSE than our generalized method with no input cosmological parameters; we show that the improvement is driven by the non-linear structures in the convergence. With higher galaxy density in future weak lensing data unveiling more non-linear scales, it is likely that deep learning will be a leading approach for mass mapping with Euclid and LSST.


2021 ◽  
Author(s):  
Amin Zehtabian ◽  
Paul Markus Müller ◽  
Maximilian Goisser ◽  
Leon Obendorf ◽  
Lea Jänisch ◽  
...  

The combination of image analysis and fluorescence superresolution microscopy methods allows for unprecedented insight into the organization of macromolecular assemblies in cells. Advances in deep learning-based object recognition enables the automated processing of large amounts of data, resulting in high accuracy through averaging. However, while the analysis of highly symmetric structures of constant size allows for a resolution approaching the dimensions of structural biology, deep learning methods are prone to different forms of bias. A biased recognition of structures may prohibit the development of readouts for processes that involve significant changes in size or shape of amorphous macromolecular complexes. What is required to overcome this problem is a detailed investigation of potential sources of bias and the rigorous testing of trained models using real or simulated data covering a wide dynamic range of possible results. Here we combine single molecule localization-based superresolution microscopy of septin ring structures with the training of several different deep learning models for a quantitative investigation of bias resulting from different training approaches and finally quantitative changes in septin ring structures. We find that trade-off exists between measurement accuracy and the dynamic range of recognized phenotypes. Using our trained models, we furthermore find that septin ring size can be explained by the number of subunits they are assembled from alone. Our work provides a new experimental system for the investigation of septin polymerization.


2021 ◽  
Author(s):  
Mirco Huennefeld ◽  
Rasha Abbasi ◽  
Markus Ackermann ◽  
Jenni Adams ◽  
Juanan Aguilar ◽  
...  

2021 ◽  
Author(s):  
Jodel Cornelio ◽  
Syamil Mohd Razak ◽  
Atefeh Jahandideh ◽  
Behnam Jafarpour ◽  
Young Cho ◽  
...  

Abstract Transfer learning is a machine learning concept whereby the knowledge gained (e.g., a model developed) in one task can be transferred (applied) to solve a different but related task. In the context of unconventional reservoirs, the concept can be used to transfer a machine learning model that is learned from data in one field (or shale play) to another, thereby significantly reducing the data needs and efforts to build a new model from scratch. In this work, we study the feasibility of developing deep learning models that can capture and transfer common features in a rich dataset pertaining to a mature unconventional play to enable production prediction in a new unconventional play with limited available data. The focus in this work is on method development using simulated data that correspond to the Bakken and Eagle Ford Shale Plays as two different unconventional plays in the US. We use formation and completion parameter ranges that correspond to the Bakken play with their simulated production responses to explore different approaches for training neural network models that enable transfer learning to predict production responses of input parameters corresponding to the Eagle Ford play (previously unseen input parameters). We explore different schemes by accessing the internal components of the model to extrapolate and categorize salient features that are represented in the trained neural network. Ultimately, our goal is to use these new mechanisms to enable effective sharing and reuse of discovered features from one unconventional well to another. To extract salient trends from formation and completion input parameters and their corresponding simulated production responses, we use deep learning architectures that consist of convolutional encoder-decoder networks. The architecture is then trained with rich simulated data from one field to generate a robust mapping between the input and the output feature spaces. The "learned" parameters from this network can then be "transferred" to develop a different predictive model for another field that may lack sufficient historical data. The results show that using standard training approaches, a neural network model that is trained with sufficiently large data samples from Bakken could produce reliable prediction models for typical wells that may be found in that field. The same neural network, however, could not produce reliable predictions for a typical Eagle Ford well. Furthermore, we observe that a neural network trained with insufficient data samples from Eagle Ford produces a poor prediction model for typical wells that may be found in Eagle Ford. However, when extrapolated feature components of the Bakken neural network were integrated into the training process of the Eagle Ford neural network, the resulting predictions for typical Eagle Ford wells improved significantly. Moreover, we observe that the ability to transfer learning can improve when specialized training strategies are adopted to enable transfer learning. Using several numerical experiments, the paper presents and assesses various transfer learning strategies to predict the production performance of unconventional wells in a new area with limited information by integrating knowledge from more mature plays.


Author(s):  
Naoto Yokoya ◽  
Kazuki Yamanoi ◽  
Wei He ◽  
Gerald Baier ◽  
Bruno Adriano ◽  
...  

Tomography ◽  
2021 ◽  
Vol 7 (3) ◽  
pp. 358-372
Author(s):  
Matthew D. Holbrook ◽  
Darin P. Clark ◽  
Rutulkumar Patel ◽  
Yi Qi ◽  
Alex M. Bassil ◽  
...  

We are developing imaging methods for a co-clinical trial investigating synergy between immunotherapy and radiotherapy. We perform longitudinal micro-computed tomography (micro-CT) of mice to detect lung metastasis after treatment. This work explores deep learning (DL) as a fast approach for automated lung nodule detection. We used data from control mice both with and without primary lung tumors. To augment the number of training sets, we have simulated data using real augmented tumors inserted into micro-CT scans. We employed a convolutional neural network (CNN), trained with four competing types of training data: (1) simulated only, (2) real only, (3) simulated and real, and (4) pretraining on simulated followed with real data. We evaluated our model performance using precision and recall curves, as well as receiver operating curves (ROC) and their area under the curve (AUC). The AUC appears to be almost identical (0.76–0.77) for all four cases. However, the combination of real and synthetic data was shown to improve precision by 8%. Smaller tumors have lower rates of detection than larger ones, with networks trained on real data showing better performance. Our work suggests that DL is a promising approach for fast and relatively accurate detection of lung tumors in mice.


Author(s):  
Hiroki MINAKAWA ◽  
Issaku AZECHI ◽  
Masaomi KIMURA ◽  
Naoto OKUMURA ◽  
Nobuaki KIMURA ◽  
...  

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