scholarly journals Identification of BLB resistant genes in some rice varieties for development of high yielding bacterial leaf blight tolerant types

2020 ◽  
Vol 41 (1) ◽  
pp. 85-91
Author(s):  
K. Majumder ◽  
◽  
S.I. Mondal ◽  
R. Mallick ◽  
T. Dasgupta ◽  
...  
Keyword(s):  
Leaf Blight ◽  
Bacterial Leaf Blight ◽  
Rice Varieties ◽  
Resistant Genes

scholarly journals Marker Assisted Selection for Bacterial Leaf Blight Resistance in Segregating Populations of Cottondora Sannalu

2014 ◽  
Vol 2 (3) ◽  
pp. 229-237 ◽  
Author(s):  
Manu Maya Magar ◽  
Ch.V. Durga Rani ◽  
G Auradha
Keyword(s):  
Target Genes ◽  
Rice Variety ◽  
Durable Resistance ◽  
Mendelian Inheritance ◽  
Leaf Blight ◽  
Bacterial Leaf Blight ◽  
Rice Varieties ◽  
Phenotypic Data ◽  
Fine Grain ◽  
Resistant Genes

The present investigation was undertaken with the objective to develop high yielding, fine grain rice varieties possessing broad spectrum durable resistance by transferring bacterial leaf blight (BLB) resistant genes viz., xa13 and Xa21 from B95-1. A popular high yielding and fine grain rice variety, MTU1010 (Cottondora Sannalu), susceptible to BLB and B95-1 carrying resistant genes for BLB (xa13 & Xa21 genes) was selected as the parent for crossing. B95-1 was verified for the presence of target genes by using gene linked primers viz., xa13 promotor and pTA 248. These primers were also used to study polymorphism between resistant (B95-1) and susceptible (MTU1010) parents. The cross viz., MTU1010 x B95-1 was affected during Rabi, 2010 and F1 progenies were confirmed during Kharif, 2011. The F1 plants confirmed as true hybrids for both the genes were advanced to F2 generation and foreground selection was done using gene linked markers. Genetic analysis in F2 populations confirmed that the genes (xa13 & Xa21) governing BLB resistance followed Mendelian inheritance. The phenotypic data analysis revealed that the plants carrying two resistance gene combinations (xa13xa13 Xa21Xa21, xa13xa13Xa21xa21) showed BLB resistance (0-2 scale), while the gene combinations viz., Xa13Xa13Xa21Xa21, Xa13Xa13Xa21xa21, and Xa13xa13Xa21Xa21, Xa13xa13Xa21xa21 showed BLB resistance (0.5-3.0).DOI: http://dx.doi.org/10.3126/ijasbt.v2i3.10570 Int J Appl Sci Biotechnol, Vol. 2(3): 229-237   

scholarly journals GENETIC VARIABILITIES OF AGRONOMIC TRAITS AND BACTERIAL LEAF BLIGHT RESISTANCE OF HIGH YIELDING RICE VARIETIES

2020 ◽  
Vol 20 (2) ◽  
pp. 43
Author(s):  
Nafisah Nafisah ◽  
Celvia Roza ◽  
Nani Yunani ◽  
Aris Hairmansis ◽  
Tita Rostiati ◽  
...  
Keyword(s):  
Agronomic Traits ◽  
Genetic Resistance ◽  
Leaf Blight ◽  
Bacterial Leaf Blight ◽  
Yield Potential ◽  
Blight Resistance ◽  
Wet Season ◽  
Rice Varieties ◽  
Superior Genotypes ◽  
Productive Tiller

<p class="abstrakinggris">Hundred of high yielding and bacterial leaf blight (<em>Xanthomonas oryzae</em> pv. <em>oryzae, Xoo</em>) resistant rice varieties released since the 1960s are important sources of genetic materials for exploring superior genotypes. The study aimed to evaluate the genetic resistance of 177 rice varieties to <em>Xoo</em> and their agronomic traits. The evaluations were conducted at the Indonesian Center for Rice Research Experimental Station during the wet season (December 2015-March 2016). The bacterial leaf blight resistance was evaluated for <em>Xoo</em> pathotypes III, IV, and VIII using the clipping method. The genetic variation among genotypes was categorized as low (0–10%), medium (10–20%), and high (&gt;20%), whereas the heritability was categorized as low (0-30%), medium (30-60%), and high (&gt;60%). The variability of resistance to <em>Xoo</em> pathotypes, grain yield, and spikelet fertility was low, while the variability of plant height, productive tiller number, filled grain, and total spikelet was medium, and the variability of unfilled grain number was high. The 29 varieties  were categorized as superior based on their agronomic traits or resistance to <em>Xoo</em> pathotypes. In conclusion, Batutegi and Fatmawati were superior in the total spikelet number, while Rojolele and Inpari 2 were supreme in the thousand-grain weight. Dodokan had a very short maturity, and Inpari 24, Conde, Kalimas, Angke, Inpari 17, and Inpara 8 had the highest resistance to <em>Xoo</em> pathotypes. The study implies that the identified rice superior genotypes could be used as genetic materials to design cross combinations for higher yield potential and BLB resistance varietal improvement.</p>

scholarly journals PEMANFAATAN PIRAMIDA GEN KETAHANAN TERHADAP PENYAKIT HAWAR DAUN BAKTERI DALAM MENDUKUNG PERAKITAN VARIETAS UNGGUL PADI Application of Gene Pyramiding For Resistance to Bacterial Leaf Blight to Develop New Rice Variety

2020 ◽  
Vol 39 (1) ◽  
pp. 11
Author(s):  
Fatimah Fatimah ◽  
Joko Prasetiyono
Keyword(s):  
Molecular Marker ◽  
Rice Variety ◽  
Gene Pyramiding ◽  
Leaf Blight ◽  
Rice Production ◽  
Xanthomonas Oryzae ◽  
Bacterial Leaf Blight ◽  
Yield Potential ◽  
Rice Varieties ◽  
Marker Assisted Backcrossing

<p>Bacterial leaf blight (BLB) caused by Xanthomonas oryzae pv oryzae (Xoo) is an important bacterial disease and very destructive to rice plant. BLB decreased rice production from 20%-30% up to 80%. Host-plant resistance is a cost-effective and environmentally safe approach to reduce yield loss. However the development of new rice variety by conventional selection would take several years. The genetic improvement in rice production considered as a vital program in order to ensure national food security. The availability of corresponding molecular marker makes it more precision and efficient by reducing the time required for selection. This present article highlights the molecular approach in breeding for BLB disease resistant rice varieties. In detail, it will be discussed the application of molecular marker assisted backcrossing and pyramiding gene resistance offered breeders to accelerate the rice breeding program for resistance to BLB. The pyramiding of three resistance BLB genes (xa5, Xa7, and Xa21and one gene (Xa4) as a background into two elite indica rice varieties, Ciherang and Inpari 13, was introduced successfully. The combining of conventional breeding, marker assisted backcrossing, disease evaluation, agronomic performance and yield has led the significant resistance of pyramid lines to Xoo Race III, IV and VIII in vegetative and generative phase while their yield potential was maintained (6-7 ton/ha). The current status of Ciherang-HDB and Inpari 13-HDB pyramid lines is the production of nucleoseeds and breeder seeds. This broad spectrum and durable resistance characteristic may help in controlling BLB disease in different region of Indonesia and it will facilitate the rice self-sustainability program.</p><p>Keywords: Rice, gene pyramiding, plant breeding, molecular marker.</p><p> </p><p><strong>Abstrak</strong></p><p>Penyakit hawar daun bakteri (HDB) yang disebabkan oleh Xanthomonas oryzae pv oryzae (Xoo) merupakan penyakit penting pada tanaman padi karena dapat menurunkan produksi padi rata-rata 20-30% bahkan dapat mencapai 80%. Penggunaan varietas tahan merupakan cara pengendalian yang paling efektif, ramah lingkungan, dan mudah dilakukan. Namun pengembangan varietas unggul baru melalui seleksi konvensional memerlukan waktu lebih lama. Perbaikan varietas padi perlu terus dikembangkan dalam mendukung ketahanan pangan dan kemandirian pangan nasional. Tersedianya marka molekuler membantu proses pemuliaan tanaman menjadi lebih presisi dan lebih efisien sehingga mengurangi waktu seleksi pada tanaman progeni. Tulisan ini memfokuskan pendekatan molekuler dalam pemuliaan varietas tahan penyakit HDB melalui piramida gen ketahanan untuk mempercepat progam pemuliaan padi tahan penyakit HDB. Kegiatan menggabungkan tiga gen ketahanan (xa5, Xa7, dan Xa21) dan satu gen (Xa4) sebagai background ke dalam padi varietas Ciherang dan Inpari-13 telah berhasil dilakukan. Melalui penggabungan beberapa pendekatan yaitu pemuliaan konvensional dan silang balik berbantu marka, evaluasi penyakit dan keragaan agronomi serta komponen hasil telah menunjukkan peningkatan ketahanan yang nyata pada galur-galur piramida Ciherang HDB dan Inpari-13 HDB pada tiga ras Xoo (Ras III, IV, dan VIII), baik pada fase vegetatif maupun generatif dengan potensi hasil tidak berbeda nyata dengan tetuanya (6-7 t/ha). Saat ini sudah diproduksi benih inti (NS) dan benih penjenis (BS) galur-galur piramida Ciherang HDB dan Inpari-13 HDB. Dengan demikian, galur-galur piramida memiliki spektrum yang luas dan mampu bertahan dalam jangka waktu lama sehingga dapat mengontrol penyakit HDB di berbagai wilayah Indonesia dan mendukung target pemerintah untuk mempertahankan swasembada beras secara berkelanjutan.</p><p>Kata kunci: Padi, piramida gen, pemuliaan tanaman, marka molekuler.<br /><br /></p><p> </p>

scholarly journals Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter

PLoS ONE ◽  
2021 ◽  
Vol 16 (9) ◽  
pp. e0255470
Author(s):  
Phuong Nguyen Duy ◽  
Dai Tran Lan ◽  
Hang Pham Thu ◽  
Huong Phung Thi Thu ◽  
Ha Nguyen Thanh ◽  
...  
Keyword(s):  
Agronomic Traits ◽  
Rice Variety ◽  
Rice Cultivar ◽  
Leaf Blight ◽  
Bacterial Leaf Blight ◽  
Transcription Activator ◽  
Rice Varieties ◽  
Sugar Transporters ◽  
Blight Disease ◽  
Mutant Lines

TBR225 is one of the most popular commercial rice varieties in Northern Vietnam. However, this variety is highly susceptible to bacterial leaf blight (BLB), a disease caused by Xanthomonas oryzae pv. oryzae (Xoo) which can lead to important yield losses. OsSWEET14 belongs to the SWEET gene family that encodes sugar transporters. Together with other Clade III members, it behaves as a susceptibility (S) gene whose induction by Asian Xoo Transcription-Activator-Like Effectors (TALEs) is absolutely necessary for disease. In this study, we sought to introduce BLB resistance in the TBR225 elite variety. First, two Vietnamese Xoo strains were shown to up-regulate OsSWEET14 upon TBR225 infection. To investigate if this induction is connected with disease susceptibility, nine TBR225 mutant lines with mutations in the AvrXa7, PthXo3 or TalF TALEs DNA target sequences of the OsSWEET14 promoter were obtained using the CRISPR/Cas9 editing system. Genotyping analysis of T0 and T1 individuals showed that mutations were stably inherited. None of the examined agronomic traits of three transgene-free T2 edited lines were significantly different from those of wild-type TBR225. Importantly, one of these T2 lines, harboring the largest homozygous 6-bp deletion, displayed decreased OsSWEET14 expression as well as a significantly reduced susceptibility to a Vietnamese Xoo strains and complete resistance to another one. Our findings indicate that CRISPR/Cas9 editing conferred an improved BLB resistance to a Vietnamese commercial elite rice variety.

Developing Restorer Lines Pyramiding Different Resistant Genes to Blast and Bacterial Leaf Blight by Marker-assisted Selection in Rice

2013 ◽  
Vol 39 (9) ◽  
pp. 1582 ◽  
Author(s):  
Xiao-Biao PAN ◽  
Kai CHEN ◽  
Qiang ZHANG ◽  
Shan-Jun HUANG ◽  
Liu-Jie XIE ◽  
...  
Keyword(s):  
Marker Assisted Selection ◽  
Leaf Blight ◽  
Bacterial Leaf Blight ◽  
Resistant Genes

Rapid genotyping of bacterial leaf blight resistant genes of rice using loop-mediated isothermal amplification assay

2021 ◽  
Author(s):  
M. K. Prasannakumar ◽  
Buela P. Parivallal ◽  
Chennappa Manjunatha ◽  
Devanna Pramesh ◽  
Karthik S. Narayan ◽  
...  
Keyword(s):  
Leaf Blight ◽  
Isothermal Amplification ◽  
Bacterial Leaf Blight ◽  
Loop Mediated Isothermal Amplification ◽  
Resistant Genes ◽  
Amplification Assay

scholarly journals Seleksi Lapang Ketahanan Beberapa Varietas Padi terhadap Infeksi Hawar Daun Bakteri Strain IV dan VIII

2016 ◽  
Vol 17 (2) ◽  
pp. 80 ◽  
Author(s):  
Lina Herlina ◽  
Tiur S. Silitonga
Keyword(s):  
Oryza Sativa ◽  
Block Design ◽  
Leaf Blight ◽  
Xanthomonas Oryzae ◽  
Bacterial Leaf Blight ◽  
Bacterial Cells ◽  
Bacterial Strains ◽  
Rice Varieties ◽  
Resistance Reaction ◽  
Index Of Severity

<p>Field Selection on Several Rice Varieties for Resistance to Bacterial Leaf Blight strain IV and VIII. Bacterial leaf blight (BLB) on rice (Oryza sativa) caused by Xanthomonas oryzae pv. oryzae (Xoo) is the major obstruction for rice production. Powerful strategy to control BLB is generally conducted by planting resistant plant. Meanwhile, the main way to explore germplasm as the source of resistance gene is conducted by selection a wide rice varieties. Field selection for resistance to BLB on 150 rice-varieties (BB-Biogen collection) was conducted in 2009 in Cianjur. Three leaves and flag leaves of individual hills at vegetative and flowering stage were inoculated by clipping the leaf tip with scissors which had been connected with a suspension bottle of bacterial cells (109- 1010 cells/ml) of the isolates which represented bacterial groups (strain) IV and VIII, respectively. Each plant was inoculated with one race. Two weeks after inoculation, length of the lesion developed on the inoculated leaf was measured, as an index of severity of infection by BLB. This experiment was treated as Factorial-Randomized Completed Block Design (two factor-with 3 replications, respectively). The resistancyreaction to strain IV and VIII was observed as the variable tested, while the factors measured consists of plant-varieties and two bacterial strains. The results showed that 11 varieties with a resistance-reaction to Xoo strain IV, inwhich 5 varieties poses a consistent resistance-reaction, i.e: Pulu Bolong, Pelopor, Gombal, Barito and Kapuas. While resistancereaction to Xoo strain VIII obtained only one variety : IR42 (score-1), while 17 others showed intermediate resistancy (score-3).</p><p> </p><p><strong>Abstrak</strong></p><p>Penyakit hawar daun bakteri (HDB) yang disebabkan oleh Xanthomonas oryzae pv. oryzae (Xoo) pada padi (Oryza sativa) merupakan faktor pembatas upaya peningkatan produksi padi. Pencarian gen-gen tahan terhadap HDB sangat diperlukan untuk pengendalian penyakit tersebut. Seleksi ketahanan terhadap HDB dilakukan di Cianjur pada MT 2009 terhadap 150 varietas padi koleksi Bank Gen, BB-Biogen. Isolat Xoo yang diuji adalah strain IV dan VIII. Inokulasi dilakukan dua kali, yaitu pada fase vegetatif dan generatif dengan cara menggunting 3-5 cm dari ujung daun dan daun bendera dengan gunting yang telah dihubungkan dengan botol berisi suspensi Xoo strain IV dan VIII (109-1010 sel/ml). Rancangan percobaan yang digunakan dalam penelitian ini adalah acak kelompok faktorial dengan tiga ulangan. Sebagai varietas pembanding tahan digunakan IRBB7 dan pembanding rentan varietas Kencana Bali. Reaksi ketahanan tertinggi terhadap Xoo strain IV ditunjukkan oleh 11 varietas terpilih dengan reaksi agak tahan, lima varietas di antaranya menunjukkan reaksi yang konsisten agak tahan, yaitu varietas Pulu Bolong, Pelopor, Gombal, Barito, dan Kapuas. Reaksi &amp;lsquo;tahan&amp;rsquo; terhadap Xoo strain VIII ditunjukkan oleh satu varietas introduksi IR42. Untuk varietas terpilih dengan reaksi &amp;lsquo;agak tahan&amp;rsquo; terdapat 17 varietas.</p>

scholarly journals Marker Assisted Screening of Nepalese rice for bacterial leaf blight (BLB) resistance

2015 ◽  
Vol 3 (1) ◽  
pp. 35-39 ◽  
Author(s):  
Resham Babu Amgai ◽  
Raj Kumar Niroula ◽  
Sumitra Pantha ◽  
Shreya Singh Hamal ◽  
Bishal Gole Tamang ◽  
...  
Keyword(s):  
Resistance Gene ◽  
Leaf Blight ◽  
Bacterial Leaf Blight ◽  
Limiting Factor ◽  
Rice Varieties ◽  
Resistant Gene ◽  
Rice Landraces ◽  
Sequence Tagged Sites ◽  
Check Variety ◽  
Simple Sequence

Bacterial Leaf Blight (BLB) is the most important yield limiting factor in Nepalese rice. BLB resistance rice varieties are highly demanding in the country. Breeding efforts for developing disease resistant depends on availability and use of resistant gene donors. Nepalese rice landraces could be the source of resistant gene. Therefore, ninety six Nepalese rice accessions were screened using eight Simple Sequence Repeats (SSR) markers and one Sequence Tagged Sites (STS) marker for presence and absence of BLB resistance gene. We have detected BLB resistance gene Xa-10 on five accessions, Xa-13 on six accessions, Xa-7 on 23 accessions, Xa-3 and Xa-4 on 52 accessions, Xa-5 on 25 accessions, Xa-8 on 30 rice accessions. No any rice accessions tested have Xa-21. Similarly, 17 rice accessions showed three and more than three BLB resistance genes. Presence of Xa-13 on susceptible check variety CNTRL-85033 confirmed that this resistant gene is not working in Nepalese rice field. Therefore, Nepal need to pyramide the BLB resistant genes for durable resistance.Nepal Journal of Biotechnology. Dec. 2015 Vol. 3, No. 1: 35-39

scholarly journals Research Article Identification of bacterial leaf blight resistance genes in Malaysian local rice varieties

2020 ◽  
Vol 19 (3) ◽  
Author(s):  
N.A. Hasan ◽  
Mohd Y. Rafii ◽  
Harun A. Rahım ◽  
F. Ahmad ◽  
Nik Ismail
Keyword(s):  
Resistance Genes ◽  
Leaf Blight ◽  
Bacterial Leaf Blight ◽  
Blight Resistance ◽  
Rice Varieties ◽  
Research Article
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