scholarly journals Tuber Fulgens Quél. A New Record for Turkish Truffles

2020 ◽  
Vol 8 (11) ◽  
pp. 2472-2475
Author(s):  
Ilgaz Akata ◽  
Mustafa Sevindik ◽  
Ergin Şahin
Keyword(s):  
Phylogenetic Trees ◽  
Sequence Similarity ◽  
Large Subunit ◽  
Morphological Data ◽  
Lsu Rdna ◽  
High Sequence Similarity ◽  
Rdna Sequences ◽  
Molecular Phylogenetic ◽  
History Of ◽  
First Time

Tuber samples were collected from Kırklareli province on the 10th of August 2020 and they are identified by implementing both traditional methods and molecular phylogenetic analysis using the rDNA sequences including Internal Transcribed Spacer (ITS) and 28S Ribosomal Large Subunit (LSU) regions. By taking into account the high sequence similarity between the collected samples (ANK Akata 7351) and the truffle species Tuber fulgens Quél. the collected specimen was regarded as T. fulgens and the morphological data also consolidated this finding. As a result, T. fulgens was reported for the first time from Turkey. A short description of the newly reported species is given along with its macro and microphotographs, and spore images taken by a scanning electron microscope (SEM). Additionally, ITS and LSU rDNA based evolutionary history of the specimen is provided with phylogenetic trees.

scholarly journals Jumping through the hoops: the challenges of daffodil (Narcissus) classification

2019 ◽  
Vol 190 (4) ◽  
pp. 389-404 ◽  
Author(s):  
Kálmán Könyves ◽  
John David ◽  
Alastair Culham
Keyword(s):  
Dna Sequences ◽  
Phylogenetic Trees ◽  
Plastid Dna ◽  
Microsatellite Data ◽  
Population Sampling ◽  
Molecular Phylogenetic ◽  
History Of ◽  
Nuclear Microsatellite ◽  
Congruent Group ◽  
First Time

Abstract Hoop-petticoat daffodils are a morphologically congruent group comprised of two distinct lineages in molecular phylogenetic trees of Narcissus. It is possible that the morphological similarity is a product of both historic and current low-level gene flow between these lineages. For the first time, we report population sampling from across the entire range of distribution covering the Iberian Peninsula and Morocco. In total, 455 samples were collected from 59 populations. Plastid DNA sequences of matK and ndhF were generated alongside 11 microsatellite loci to permit comparison between plastid and nuclear lineage histories. The plastid DNA phylogenetic tree was highly congruent with previous molecular studies and supported the recognition of these two lineages of hoop-petticoat daffodils as separate sections. Assignment of samples to sections sometimes differed between plastid DNA and (nuclear) microsatellite data. In these cases, the taxa had previously been the focus of dissent in taxonomic placement based on morphology. These discrepancies could be explained by hybridization and introgression among the two lineages during the evolution of hoop-petticoat daffodils, and shows that placement of species in sections is dependent on the source of data used. This study underlines the complex evolutionary history of Narcissus and highlights the discrepancies between floral morphology and phylogeny, which provides a continuing challenge for the systematics of Narcissus.

First taxonomic description of multivalvulidan myxosporean parasites from elasmobranchs: Kudoa hemiscylli n.sp. and Kudoa carcharhini n.sp. (Myxosporea: Multivalvulidae)

Parasitology ◽  
2010 ◽  
Vol 137 (13) ◽  
pp. 1885-1898 ◽  
Author(s):  
R. J. GLEESON ◽  
M. B. BENNETT ◽  
R. D. ADLARD
Keyword(s):  
Host Species ◽  
New Records ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Small Subunit ◽  
Lsu Rdna ◽  
Rdna Sequences ◽  
Taxonomic Description ◽  
Molecular Phylogenetic ◽  
Potential Impact

SUMMARYMyxosporean parasites are significant parasites of fishes not only for their apparent high diversity but also for their potential impact on fish health and/or marketability. Regardless, our knowledge of most myxosporeans, especially those found in elasmobranch hosts, is superficial. A study of multivalvulidan diversity in a range of elasmobranchs from Queensland, Western Australia and the Northern Territory (Australia) was conducted to address this knowledge gap. Specimens were collected from a total of 3 orders, 9 families and 31 species of elasmobranchs. Myxosporean infections referable to the genus Kudoa were discovered in host muscle and characterized morphologically and genetically. Both small subunit (SSU) and large subunit (LSU) rDNA sequences were used in molecular phylogenetic analyses. Kudoa spp. infected 27 of the 31 species of elasmobranchs examined, representing new records of this parasite genus in 26, of the 27, host species. Kudoids were observed in all 3 orders, and 7 out of the 9 families of elasmobranchs investigated. This paper reports the first 2 multivalvulidan species to be formally described from elasmobranchs, Kudoa hemiscylli n.sp. characterized from Hemiscyllium ocellatum (and 8 other host species) and Kudoa carcharhini n. sp. characterized from Carcharhinus cautus (and 2 other host species). Phylogenetic analyses revealed that kudoids from elasmobranchs form a separate lineage to those of teleosts, but are anchored within the overall kudoid clade.

scholarly journals Description of Longidorus bordonensis sp. nov. from Portugal, with systematics and molecular phylogeny of the genus (Nematoda, Longidoridae)

2020 ◽  
Vol 96 (1) ◽  
pp. 175-193
Author(s):  
Carlos Gutiérrez-Gutiérrez ◽  
Margarida Teixeira Santos ◽  
Maria Lurdes Inácio ◽  
Jonathan D. Eisenback ◽  
Manuel Mota
Keyword(s):  
Phylogenetic Trees ◽  
Cork Oak ◽  
Morphological Data ◽  
Rrna Genes ◽  
Integrative Approach ◽  
Sister Clade ◽  
Molecular Phylogenetic ◽  
Wild Olive ◽  
First Time ◽  
Short Body

The genus Longidorus currently comprises 176 species of polyphagous plant ectoparasites, including eight species that vector nepoviruses. Longidorus is one of the most difficult genera to accurately identify species because of the similar morphology and overlapping measurements and ratios among species. Sequences of ribosomal RNA (rRNA)-genes are a powerful level-species diagnostic tool for the genus Longidorus. From 2015 to 2019, a nematode survey was conducted in vineyards and agro-forest environments in Portugal. The populations of Longidorus spp. were characterized through an integrative approach based on morphological data and molecular phylogenetic analysis from rRNA genes (D2-D3 expansion segments of the 28S, ITS1, and partial 18S), including the topotype of L. vinearum. Longidorus bordonensissp. nov., a didelphic species recovered from the rhizosphere of grasses, is described and illustrated. Longidorus vineacola, with cork oak and wild olive as hosts, is also characterized. This is the first time that L. wicuolea, from cork oak, is reported for Portugal. Bayesian inference (BI) phylogenetic trees for these three molecular markers established phylogenetic relationships among the new species with other Longidorus spp. Phylogenetic trees indicated that i) L. bordonensissp. nov. is clustered together with other Longidorus spp. and forms a sister clade with L. pini and L. carpetanensis, sharing a short body and odontostyle length, and elongate to conical female tail, and ii) all the other species described and illustrated are phylogenetically associated, including the topotype isolate of L. vinearum.

scholarly journals Two new Stephanostomum-like cercariae (Digenea: Acanthocolpidae) from Nassarius dorsatus and N. olivaceus (Gastropoda: Nassariidae) in Central Queensland, Australia

Zootaxa ◽  
2010 ◽  
Vol 2445 (1) ◽  
pp. 35 ◽  
Author(s):  
LEONIE J. BARNETT ◽  
TERRENCE L. MILLER ◽  
THOMAS H. CRIBB
Keyword(s):  
Secondary Structure ◽  
Sequence Data ◽  
Large Subunit ◽  
Minimum Free Energy ◽  
Morphological Data ◽  
Lsu Rdna ◽  
Dna Sequence Data ◽  
Rdna Sequences ◽  
Energy Modelling ◽  
Compensatory Base Changes

Two new Stephanostomum-like cercariae, Cercaria capricornia VII and Cercaria capricornia VIII (Digenea: Acanthocolpidae), are described from the nassariid gastropods Nassarius dorsatus and Nassarius olivaceus collected from the intertidal zone in the Capricornia region of Central Queensland, Australia. Morphological analysis of these new cercariae was augmented with DNA sequence data from the large subunit (LSU) ribosomal DNA region to aid in identification. Bayesian inference analysis of the LSU rDNA revealed that these putative acanthocolpid cercariae nested well within a clade containing species of Stephanostomum, which along with morphological data, suggests they are species of Stephanostomum. Comparative analysis of LSU rDNA sequences also indicates that these two cercariae are not S. adlardi, S. bicoronatum, S. tantabiddii or S. cf. uku, all species known from Australian fishes. The secondary structure of the internal transcribed spacer 2 (ITS2) rDNA region was inferred for these two cercariae using minimum free energy modelling algorithms. Both cercarial types displayed a four helix ITS2 secondary structure model and differed from each other by two compensatory base changes (CBCs) and nine hemi-CBCs.

Panagrellus levitatus sp. n. (Rhabditida: Panagrolaimidae), a nematode suppressing Drosophila melanogaster in laboratory cultures

Nematology ◽  
2018 ◽  
Vol 20 (3) ◽  
pp. 285-297 ◽  
Author(s):  
Elena Ivanova ◽  
Ksenia Perfilieva ◽  
Sergei Spiridonov
Keyword(s):  
Drosophila Melanogaster ◽  
New Species ◽  
Nematode Species ◽  
Laboratory Culture ◽  
Ssu Rdna ◽  
Lsu Rdna ◽  
Red Palm Weevil ◽  
Rdna Sequences ◽  
Mass Reproduction ◽  
First Time

A new nematode species recovered from the laboratory culture ofDrosophila melanogasteris described and illustrated. The mass reproduction ofPanagrellus levitatussp. n. in the fly culture occurred several times and resulted in a significant reduction of the fly population. Nematode outbreaks happened after the introduction ofD. melanogasterto the culture from natural sources. The new species is morphologically similar toP. ulmi. Partial LSU rDNA and SSU rDNA sequences were obtained and subjected to phylogenetic analysis that demonstrated the affinity of the new species withPanagrellussp. ‘MC2014’ from a red palm weevil. For the first time, the dauer juveniles ofPanagrelluswere described.

scholarly journals Colletotrichum isolates related to Anthracnose of cashew trees in Brazil: morphological and molecular description using LSU rDNA sequences

2010 ◽  
Vol 53 (4) ◽  
pp. 741-752 ◽  
Author(s):  
Ana Maria Queijeiro Lopez ◽  
John Alexander Lucas
Keyword(s):  
Mycelial Growth ◽  
Host Plants ◽  
Large Subunit ◽  
Lsu Rdna ◽  
Rdna Sequences ◽  
D2 Domain ◽  
The One ◽  
High Degree ◽  
Molecular Description ◽  
28S Ribosomal Dna

Thirty six isolates of fungi obtained from anthracnose lesions of cashew and associated host plants in Brazil, were compared by their cultural, morphological and partial sequences of the 28S ribosomal DNA characters. They showed a high degree of cultural variability. The average mycelial growth rate on all tested media ranged from 10.2-13.3 mm/day between the isolates. Most of them produced perithecia (sterile and fertile) and some produced setae (sterile and fertile). All the isolates produced acervuli with predominantly cylindrical conidia (12.4-17.7 µmX 4.8-6.0 µm in width) with round ends, which became septate on germination, and produced unlobed or slightlylobed appressoria. Comparison of the D2 domain of the large subunit (LSU) rDNA sequences with those of other defined species of Colletotrichum and Glomerella grouped 35 of the isolates with known strains of C. gloeosporioides from different hosts (> 98.9% homology). The one exception (LARS 921) was identical to G. cingulata (LARS 238) from Vigna unguiculata.

Observations on Malenchus geraerti n. sp. (Rhabditida: Tylenchidae), a morphological and molecular phylogenetic study

Zootaxa ◽  
2018 ◽  
Vol 4369 (3) ◽  
pp. 406 ◽  
Author(s):  
MAJID PEDRAM ◽  
MAHYA SOLEYMANZADEH ◽  
EBRAHIM POURJAM ◽  
MAHYAR MOBASSERI
Keyword(s):  
New Species ◽  
Large Subunit ◽  
Small Subunit ◽  
Phylogenetic Study ◽  
Molecular Characteristics ◽  
Lsu Rdna ◽  
Northern Iran ◽  
Lateral Field ◽  
Molecular Phylogenetic ◽  
Short Body

Malenchus geraerti n. sp., recovered from natural regions of northern Iran, is described and illustrated based on morphological, morphometric and molecular data. The new species is characterized by having females with a short body, an anteriorly wide S-shaped amphidial opening narrowing posteriorly, cuticle with prominent annuli, lateral field a plain band with smooth margins, muscular metacorpus with well-developed valve and corresponding plates, spermatheca filled with small spheroid sperm cells, vulva sunken in body with large epiptygma and no flap, and conical tail tapering gradually to a more or less pointed tip. Males of the new species are characterized by having a short body, tylenchoid spicules, adcloacal bursa with smooth margin and tail similar to that of the female. Morphologically, the new species is similar to five known species of the genus: M. fusiformis, M. machadoi, M. pachycephalus, M. solovjovae and M. undulatus. It most closely resembles M. pachycephalus, but as a cryptic species it can be differentiated using morphological and molecular characteristics. Comparisons with the four other aforementioned species are also discussed. Molecular phylogenetic studies using partial sequences of small and large subunit ribosomal DNA fragments reveal that the new species forms a clade with the species M. neosulcus in the small subunit (SSU) rDNA, and two species of Lelenchus in the large subunit (LSU) rDNA tree. 

An enigma no more: an integrated taxonomic revision of Aenigmetopia Malloch reveals novel phylogenetic placement and four new species (Diptera : Sarcophagidae : Miltogramminae)

2020 ◽  
Author(s):  
Nikolas P. Johnston ◽  
James F. Wallman ◽  
Krzysztof Szpila ◽  
Thomas Pape
Keyword(s):  
New Species ◽  
Taxonomic Revision ◽  
Single Species ◽  
Species Level ◽  
Morphological Data ◽  
Morphological Evidence ◽  
Phylogenetic Placement ◽  
Molecular Phylogenetic ◽  
First Time ◽  
Flesh Flies

Aenigmetopia Malloch is the only endemic genus of miltogrammine flesh flies (Diptera:Sarcophagidae) in Australia and, until now it has been known from a single species, A. fergusoni Malloch. This study constitutes the first comprehensive taxonomic revision of Aenigmetopia. Four new species, Aenigmetopia amissa, sp. nov., A. corona, sp. nov., A. kryptos, sp. nov. and A. pagoni, sp. nov., are described through the integration of molecular and morphological data and characters for genus- and species-level diagnoses are given. Aenigmetopia is included in a molecular phylogenetic analysis for the first time and the genus emerges as the sister taxon to Metopia Meigen, in agreement with morphological evidence.

Cryptic species, biogeographic complexity and the evolutionary history of theEctemnorhinusgroup in the sub-Antarctic, including a description ofBothrometopus huntleyi, n. sp.

2011 ◽  
Vol 23 (3) ◽  
pp. 211-224 ◽  
Author(s):  
G.C. Grobler ◽  
A.D.S. Bastos ◽  
A.M. Treasure ◽  
S.L. Chown
Keyword(s):  
Sequence Data ◽  
Morphological Data ◽  
Early Pleistocene ◽  
Dna Sequence Data ◽  
Prince Edward Islands ◽  
South Indian ◽  
Prevailing Wind Direction ◽  
Previous Hypothesis ◽  
Molecular Phylogenetic ◽  
History Of

AbstractThe biogeography of the South Indian Ocean Province (SIP) biotas has long been controversial. Much of the discussion has been based on interpretation of species distributions, based on morphological or anatomical delimitations. However, molecular phylogenetic approaches elsewhere have recently shown that interpretations based solely on morphological data may be misleading. Nonetheless, few studies have employed molecular phylogenetic approaches to understand the biogeography of the SIP biotas. We do so here for theEctemnorhinusgroup of genera, a monophyletic unit of weevils endemic to the region. We use mitochondrial cytochrome oxidase I DNA sequence data to reconstruct relationships among 13 species and 22 populations in the generaPalirhoeus,BothrometopusandEctemnorhinus. On the basis of this analysis we find little support for separating the genusPalirhoeusfromBothrometopus, and little support for the morphologically-based species groups currently recognized withinBothrometopus. Using a molecular clock we show that dispersal among islands probably took place against the prevailing wind direction. These data also support a previous hypothesis of radiation of the epilithic generaBothrometopusandPalirhoeusduring the Pliocene/early Pleistocene, but reject the hypothesis that the genusEctemnorhinusradiated following the last glacial maximum. We show thatBothrometopus parvulus(C.O. Waterhouse) on the Prince Edward Islands comprises two species that are not sister taxa. We name the second speciesBothrometopus huntleyin. sp. and provide a description thereof.

Sign in / Sign up

Export Citation Format

Share Document