scholarly journals Developing and disseminating data analysis tools for open science

2021 ◽  
Author(s):  
Atsushi Mizumoto

In this short chapter, I emphasize how data analysis tools play a vital role in the open science research cycle. I also introduce freely available tools that can be used for open science research practices in applied linguistics. Recommendations are given on what developers should keep in mind when developing, releasing, and disseminating their tools.

2021 ◽  
Author(s):  
Emma Norris

We could all benefit from our research and the research of others being more transparent and accessible to all, regardless of our career stage or research field. ‘Open Science’ provides us with a range of research practices designed to make the processes, data, analysis and outputs more reproducible, understandable and accessible. These practices range from making the protocol of your research explicit and publicly available via study pre-registration or Registered Report, to making a final published paper freely available via Open Access publishing or pre-print. This chapter will outline issues and challenges in research that Open Science helps to reduce. It will outline what Open Science is and how it can be integrated into your research workflow and summarise some global initiatives to increase Open Science uptake. The chapter will end by discussing how Open Science can benefit and accelerate your career and give you some tips on how to get started.


2021 ◽  
Author(s):  
Eric R. Louderback ◽  
Sally M Gainsbury ◽  
Robert Heirene ◽  
Karen Amichia ◽  
Alessandra Grossman ◽  
...  

The replication crisis has stimulated researchers around the world to adopt open science research practices intended to reduce publication bias and improve research quality. Open science practices include study pre-registration, open data, open publication, and avoiding methods that can lead to publication bias and low replication rates. Although gambling studies uses similar research methods to behavioral research fields that have struggled with replication, we know little about the uptake of open science research practices in gambling-focused research. We conducted a scoping review of 500 recent (1/1/2016 – 12/1/2019) studies focused on gambling and problem gambling to examine the use of open science and transparent research practices. Our results showed that a small percentage of studies used most practices: whereas 54.6% (95% CI: [50.2, 58.9]) of studies used at least one of nine open science practices, each practice’s prevalence was: 1.6% for pre-registration (95% CI:[0.8, 3.1]), 3.2% for open data (95% CI:[2.0, 5.1]), 0% for open notebook, 35.2% for open access (95% CI:[31.1, 39.5]), 7.8% for open materials (95% CI:[5.8, 10.5]), 1.4% for open code (95% CI:[0.7, 2.9]), and 15.0% for preprint posting (95% CI:[12.1, 18.4]). In all, 6.4% (95% CI:[4.6, 8.9]) used a power analysis and 2.4% (95% CI:[1.4, 4.2]) of the studies were replication studies. Exploratory analyses showed that studies that used any open science practice, and open access in particular, had higher citation counts. We suggest several practical ways to enhance the uptake of open science principles and practices both within gambling studies and in science more broadly.


1983 ◽  
Vol 38 ◽  
pp. 2-3
Author(s):  
Jon A. Christopherson ◽  
Phillip J. Heyl

By introducing data analysis techniques, analyzing current research in voting behavior, and using the computer for social science research, introductory American Government courses on the undergraduate level are undertaking ambitious goals. Using the SETUPS units for each presidential election since 1972, cadets at the Coast Guard Academy have engaged in a comprehensive approach to the study of American electoral behavior in an interactive data analysis mode. Although SETUPS modules are run at most colleges and universities in batch mode, there are imitations and drawbacks to batch mode. The Coast Guard Academy is able to utilize interactive data analysis as a result of its time-sharing arrangement with the Dartmouth College Time Sharing System (DCTS). In this article we will discuss the use of SETUPS in an interactive mode using the CIDAR interactive data analysis system.


Solid Earth ◽  
2011 ◽  
Vol 2 (1) ◽  
pp. 53-63 ◽  
Author(s):  
S. Tavani ◽  
P. Arbues ◽  
M. Snidero ◽  
N. Carrera ◽  
J. A. Muñoz

Abstract. In this work we present the Open Plot Project, an open-source software for structural data analysis, including a 3-D environment. The software includes many classical functionalities of structural data analysis tools, like stereoplot, contouring, tensorial regression, scatterplots, histograms and transect analysis. In addition, efficient filtering tools are present allowing the selection of data according to their attributes, including spatial distribution and orientation. This first alpha release represents a stand-alone toolkit for structural data analysis. The presence of a 3-D environment with digitalising tools allows the integration of structural data with information extracted from georeferenced images to produce structurally validated dip domains. This, coupled with many import/export facilities, allows easy incorporation of structural analyses in workflows for 3-D geological modelling. Accordingly, Open Plot Project also candidates as a structural add-on for 3-D geological modelling software. The software (for both Windows and Linux O.S.), the User Manual, a set of example movies (complementary to the User Manual), and the source code are provided as Supplement. We intend the publication of the source code to set the foundation for free, public software that, hopefully, the structural geologists' community will use, modify, and implement. The creation of additional public controls/tools is strongly encouraged.


2011 ◽  
Vol 3 (2) ◽  
pp. 305-318 ◽  
Author(s):  
Michele Crosetto ◽  
Oriol Monserrat ◽  
María Cuevas ◽  
Bruno Crippa

2021 ◽  
Author(s):  
Jesse Fox ◽  
Katy E Pearce ◽  
Adrienne L Massanari ◽  
Julius Matthew Riles ◽  
Łukasz Szulc ◽  
...  

Abstract The open science (OS) movement has advocated for increased transparency in certain aspects of research. Communication is taking its first steps toward OS as some journals have adopted OS guidelines codified by another discipline. We find this pursuit troubling as OS prioritizes openness while insufficiently addressing essential ethical principles: respect for persons, beneficence, and justice. Some recommended open science practices increase the potential for harm for marginalized participants, communities, and researchers. We elaborate how OS can serve a marginalizing force within academia and the research community, as it overlooks the needs of marginalized scholars and excludes some forms of scholarship. We challenge the current instantiation of OS and propose a divergent agenda for the future of Communication research centered on ethical, inclusive research practices.


2021 ◽  
Author(s):  
Scott A. Jarmusch ◽  
Justin J. J. van der Hooft ◽  
Pieter C. Dorrestein ◽  
Alan K. Jarmusch

This review covers the current and potential use of mass spectrometry-based metabolomics data mining in natural products. Public data, metadata, databases and data analysis tools are critical. The value and success of data mining rely on community participation.


2021 ◽  
Vol 40 (2) ◽  
pp. 137-141 ◽  
Author(s):  
Jordan Mansell ◽  
Allison Harell ◽  
Elisabeth Gidengil ◽  
Patrick A. Stewart

AbstractWe introduce the Politics and the Life Sciences special issue on Psychophysiology, Cognition, and Political Differences. This issue represents the second special issue funded by the Association for Politics and the Life Sciences that adheres to the Open Science Framework for registered reports (RR). Here pre-analysis plans (PAPs) are peer-reviewed and given in-principle acceptance (IPA) prior to data being collected and/or analyzed, and are published contingent upon the preregistration of the study being followed as proposed. Bound by a common theme of the importance of incorporating psychophysiological perspectives into the study of politics, broadly defined, the articles in this special issue feature a unique set of research questions and methodologies. In the following, we summarize the findings, discuss the innovations produced by this research, and highlight the importance of open science for the future of political science research.


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