scholarly journals Genetic Diversity of Boro Rice (Oryza sativa L.) Landraces in Bangladesh

2016 ◽  
Vol 29 (2) ◽  
pp. 33-40 ◽  
Author(s):  
N. Akter ◽  
M. Z. Islam ◽  
M. A. Siddique ◽  
T. Chakrabarty ◽  
M. Khalequzzaman ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Oryza Sativa ◽  
Oryza Sativa L ◽  
Flag Leaf ◽  
Growth Duration ◽  
Cluster Distance ◽  
Transgressive Segregants ◽  
Rice Genotypes ◽  
1000 Grain Weight ◽  
Boro Rice

Genetic diversity of 45 traditional Bangladeshi boro rice genotypes was studied through Mahalanobis D2 statistics and was grouped into six clusters. The inter-cluster distances were higher than intra-cluster distances indicating wider genetic diversity among the genotypes of different clusters. The intra-cluster distances were lower in all the cases reflecting homogeneity of the genotypes within the cluster. The cluster V contained the highest number of genotypes (14) and the cluster I and VI contained the lowest (4) number. The highest intra-cluster distance was noticed for the cluster VI and the lowest for cluster V. The highest inter-cluster distance was observed between cluster I and VI followed by cluster II and VI, cluster I and V and the lowest between cluster II and IV. The genotypes from cluster VI could be selected as parents for hybridization for producing transgressive segregants. The highest cluster means for yield, grains per panicle and grain length-breath ratio were obtained from cluster I; whereas higher yield, grain breath, 1000 grain weight, flag leaf area, shortest growth duration were obtained from cluster V. Therefore, more emphasis should be given on cluster I, cluster V and cluster VI for selecting genotypes as parents to produce new recombinants with desired traits.

scholarly journals GENETIC DIVERSITY IN LOCAL BORO RICE (Oryza sativa L.) GENOTYPES OF BANGLADESH

2013 ◽  
Vol 26 (1) ◽  
pp. 19-24 ◽  
Author(s):  
M. A. Siddique ◽  
M. Khalequzzaman ◽  
M. Z. Islam ◽  
M. S. Ahamed ◽  
E. S. M. H. Rashid
Keyword(s):  
Genetic Diversity ◽  
Oryza Sativa L ◽  
Flag Leaf ◽  
Leaf Length ◽  
Grain Weight ◽  
Growth Duration ◽  
Cluster Distance ◽  
Flag Leaf Length ◽  
1000 Grain Weight ◽  
Boro Rice

Genetic diversity in 40 traditional boro rice genotypes was studied under irrigated condition through Mahalanobis D2 statistic for grain yield and yield contributing characters. The genotypes were grouped into five clusters. The inter-cluster distances were higher than intra-cluster distances indicating wider genetic diversity among the clusters. The intra-cluster distances were lower in all the cases reflecting homogeneity of the genotypes within the clusters. The cluster IV contained the highest number of genotypes (22) and the cluster II and V contained the lowest (1). The highest intra-cluster distance was noticed for the cluster III and lowest for cluster II and V. The highest inter-cluster distance was observed between cluster II and III followed by cluster II and V, cluster I and II and the lowest between cluster I and IV. Regarding inter-cluster distance, the genotypes of cluster II   showed high genetic distance from all other clusters. The genotypes from cluster II could be hybridized with the genotypes of other clusters for producing transgressive segregants. Based on positive value of vector 1 and vector 2, panicle/hill had maximum contribution towards genetic divergence. The highest cluster means for yield, flag leaf length and grain length breadth ratio were obtained from cluster IV. The highest 1000-grain weight, shortest growth duration and grain breadth were found in cluster II while the lowest mean value for yield, flag leaf length, filled grains and 1000 grain weight were found in cluster V.  Therefore, more emphasis should be given on cluster II, III and cluster IV for selecting genotypes as parents for crossing with the genotypes of cluster V which would be used to produce new recombinants with desired traits.DOI: http://dx.doi.org/10.3329/bjpbg.v26i1.19980

scholarly journals Genetic Diversity in Aus rice (Oryza sativa L.) Genotypes of Bangladesh

2018 ◽  
Vol 43 (2) ◽  
pp. 253-266
Author(s):  
N Akter ◽  
H Begum ◽  
MZ Islam ◽  
MA Siddique ◽  
M Khalequzzaman
Keyword(s):  
Genetic Diversity ◽  
Oryza Sativa ◽  
Genetic Distance ◽  
Oryza Sativa L ◽  
Mean Value ◽  
Tiller Number ◽  
Cluster Distance ◽  
Transgressive Segregants ◽  
Rice Genotypes ◽  
High Genetic Distance

Genetic diversity in 31 traditional Bangladeshi Aus rice genotypes were studied under transplanted condition through Mahalanobis D2 statistic for grain yield and yield contributing characters. The genotypes were grouped into five clusters. The inter-cluster distances were higher than intra-cluster distances indicating wider genetic diversity among the genotypes of different clusters. The intra-cluster distances were lower in all the cases reflecting homogeneity of the genotypes within the clusters. The cluster II contained the highest number of genotypes (08) and the cluster I and III contained the lowest (05). The highest intra-cluster distance was noticed for the cluster II and the lowest for cluster IV. The highest inter-cluster distance was observed between cluster II and V followed by cluster III and V, cluster I and V and the lowest between cluster I and III. Regarding inter-cluster distance, the genotypes of cluster V showed high genetic distance from all other clusters. The genotypes from cluster V could be hybridized with the genotypes of other characters of other clusters for producing transgressive segregants. The highest cluster means for yield, effective tiller number and grain length, were obtained from cluster I; whereas the lowest mean value for yield, culm length, plant height and grain breadth were found in cluster II. Therefore, genotypes under cluster I, cluster II and cluster V might be selected for future breeding program as parents for crossing to produce new recombinants with desired traits.Bangladesh J. Agril. Res. 43(2): 253-266, June 2018

scholarly journals Genetic Diversity of Bacterial Blight Resistant Rice (Oryza sativa L.) Genotypes from INGER

2020 ◽  
Vol 23 (2) ◽  
pp. 59-64
Author(s):  
F Akter ◽  
MZ Islam ◽  
A Akter ◽  
SK Debsharma ◽  
A Shama ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Bacterial Blight ◽  
Oryza Sativa L ◽  
Mean Value ◽  
Grain Weight ◽  
Yield Potential ◽  
Growth Duration ◽  
Panicle Number ◽  
Cluster Distance ◽  
1000 Grain Weight

Genetic diversity of 65 rice genotypes was studied from IRBBN (International Rice Bacterial Blight Nursery) of INGER (International Network for Genetic Evaluation of Rice) materials through Mahalanobis D2 statistic for grain yield and yield contributing characters. The genotypes were grouped into five clusters. The inter-cluster distances were higher than intra-cluster distances indicating wider genetic diversity among the genotypes of different clusters. The intra-cluster distances were lower in all the cases reflecting homogeneity of the genotypes within the clusters. The cluster III contained the highest number of genotypes (23) and the clusterv contained the lowest (8). The highest intra-cluster distance was noticed for the cluster I and lowest for cluster III. The highest inter-cluster distance was observed between cluster I and V, followed by cluster IV and V, cluster II andV and the lowest between cluster I and IV. Regarding inter-cluster distance, the genotypes of cluster V showed high genetic distance from all other clusters. The genotypes from cluster V could be hybridized with the genotypes of other clusters for producing transgressive segregants. Based on canonical vector analysis, panicle number per plant had maximum contribution towards genetic divergence. The highest cluster means for yield, grain/panicle and spikelet fertility were obtained from cluster V. The highest means for 1000 grain weight, second higher yield and the lowest growth duration were found in cluster II, while the lowest mean value for yield and 1000 grain weight and higher mean value for growth duration were found in cluster IV. The crosses between the genotypes/parents of cluster V and cluster II, cluster V and cluster I would exhibit high heterosis as well as higher level of yield potential. Therefore, more emphasis should be given for selection of the genotypes from clusters II and V for future breeding programme. Bangladesh Rice j. 2019, 23(2): 59-64

Assessment of molecular divergence using microsatellite markers linked to drought-yield QTLs of rice (Oryza sativa L.)

2020 ◽  
Vol 57 (2) ◽  
pp. 94-99
Author(s):  
ND Rathan ◽  
SK Singh ◽  
RK Singh ◽  
PR Vennela
Keyword(s):  
Genetic Diversity ◽  
Oryza Sativa ◽  
Oryza Sativa L ◽  
Polymorphic Marker ◽  
Polymorphic Markers ◽  
Rainfed Conditions ◽  
Transgressive Segregants ◽  
Rice Genotypes ◽  
Contemporary Study ◽  
Selection Of

The drought stress is the major limitation for the production and yield stability in the rice (Oryza sativa L.) growing areas particularly under rainfed conditions. The assessment of genetic diversity among the rice genotypes using molecular markers linked to drought-yield QTLs will help in the selection of divergent parents to produce superior recombinants and transgressive segregants to develop high yielding cultivars for drought conditions. So the current study was conducted to estimate the genetic diversity among the set of twenty four advanced drought tolerent rice genotypes and commercial checks using SSR markers linked to major drought-yield QTLs. A total of 31 alleles were detected by 13 polymorphic markers across 24 rice genotypes with a mean of 1.94 alleles per polymorphic marker. Among the polymorphic markers, 11 markers formed 2 alleles each, 2 markers have produced 3 alleles each. The PIC value observed in the contemporary study ranged from 0.239 to 0.499 with an average PIC value of 0.346. The dendrogram displayed a total five clusters on the basis of dissimilarity coefficient values, the cluster II had maximum ten genotypes followed by cluster IB-a with five genotypes and clusters IA-a, IA-b, IB-b with three genotypes each. IR 82475-110-2-2-1-2 and IR92937-178-2-2 (R-155) were found to be the most divergent genotypes.

scholarly journals Genetic Diversity in Sadajira Rice (Oryza sativa L.) Germplasm

2014 ◽  
Vol 12 (1) ◽  
pp. 26-32 ◽  
Author(s):  
MZ Islam ◽  
MA Siddique ◽  
ESMH Rashid ◽  
MS Ahmed ◽  
M Khalequzzaman
Keyword(s):  
Genetic Diversity ◽  
Plant Height ◽  
Flag Leaf ◽  
Mean Value ◽  
Grain Weight ◽  
Yield Potential ◽  
Growth Duration ◽  
Panicle Number ◽  
Cluster Distance ◽  
1000 Grain Weight

Genetic diversity of 40 traditional Bangladeshi rice genotypes was studied under rainfed condition through Mahalanobis D2 statistic for grain yield and yield contributing characters. The genotypes were grouped into six clusters. The inter-cluster distances were higher than intra-cluster distances indicating wider genetic diversity among the genotypes of different clusters. The intra-cluster distances were lower in all the cases reflecting homogeneity of the genotypes within the clusters. The cluster VI contained the highest number of genotypes (18) and the clusters I and II contained the lowest (1). The highest intra-cluster distance was noticed for the cluster IV and lowest for cluster VI. The highest inter-cluster distance was observed between cluster I and IV, followed by cluster I and II, cluster I and III and the lowest between cluster III and IV. Regarding inter-cluster distance, the genotypes of cluster IV showed high genetic distance from all other clusters. The genotypes from cluster IV could be hybridized with the genotypes of other clusters for producing transgressive segregants. Based on canonical vector analysis, panicle number per plant and 1000 grain weight had maximum contribution towards genetic divergence. The highest cluster means for yield, filled grains panicle-1 and grain breadth were obtained from cluster VI. The highest means for plant height, flag leaf area, unfilled grains panicle-1, harvest index and the lowest growth duration were found in cluster I, while the lowest mean value for yield, grain length, 1000 grain weight, plant height and highest mean value for days to flowering and maturity were found in cluster II. The crosses between the genotypes/parents of cluster VI and cluster II, cluster VI and cluster V would exhibit high heterosis as well as higher level of yield potential. Therefore, more emphasis should be given for selection of the genotypes from clusters I, VI and V for future breeding program.  DOI: http://dx.doi.org/10.3329/agric.v12i1.19576The Agriculturists 2014; 12(1) 26-32

scholarly journals Genetic Diversity of Local Rainfed Rice (Oryza Sativa L.)

1970 ◽  
Vol 23 (2) ◽  
pp. 41-46 ◽  
Author(s):  
MA Siddique ◽  
ESMH Rashid ◽  
M Khalequzzaman ◽  
MZ Islam ◽  
MS Ahmed ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Oryza Sativa ◽  
Plant Height ◽  
Oryza Sativa L ◽  
Flag Leaf ◽  
Mean Value ◽  
Leaf Length ◽  
Panicle Length ◽  
Rainfed Rice ◽  
Cluster Distance

Genetic diversity of 58 traditional local rice genotypes was studied under rainfed condition through Mahalanobis D2 statistic for grain yield and yield contributing characters. The genotypes were grouped into nine clusters. The inter-cluster distances were higher than intra-cluster distances indicating wider genetic diversity among the genotypes of different clusters. The intra-cluster distances were lower in all the cases reflecting homogeneity of the genotypes within the clusters. The cluster III contained the highest number of genotypes (13) and the cluster I contained the lowest (2). The highest intra-cluster distance was noticed for the cluster I and the lowest for cluster VII. The highest inter-cluster distance was observed between cluster I and IV followed by cluster IX and IV, cluster I and VI and the lowest between cluster V and III. Regarding inter-cluster distance, the genotypes of cluster IV showed high genetic distance from all other clusters. The genotypes from cluster IV could be hybridized with the genotypes of other characters of other clusters for producing transgressive segregants. Based on positive value of vector 1 and vector 2, flag leaf length, plant height, panicle length and grain breath had maximum contribution towards genetic divergence. The highest cluster means for yield, 1000 grain weight and grain breath were obtained from cluster VIII. The highest plant height, flag leaf width and panicle length were found in cluster II while the lowest mean value for yield, days to flowering and maturity, unfilled grain and the highest mean value for grain length breadth ratio were found in cluster II. Therefore, more emphasis should be given on cluster IV and cluster VIII, cluster I and cluster IV for selecting genotypes as parents for crossing with the genotypes of cluster II which would be used to produce new recombinants with desired traits.   Key words: Genetic diversity; D2 analysis; cluster analysis; rice (Oryza sativa L)DOI: http://dx.doi.org/10.3329/bjpbg.v23i2.9324 Bangladesh J. Pl. Breed. Genet., 23(2): 41-46, 2010

scholarly journals GENETIC DIVERSITY ANALYSIS IN RICE (Oryza sativa L.)

2012 ◽  
Vol 25 (1) ◽  
pp. 31-39
Author(s):  
S. P. Chakma ◽  
H. Huq ◽  
F. Mahmud ◽  
A. Husna
Keyword(s):  
Genetic Diversity ◽  
Grain Yield ◽  
Oryza Sativa L ◽  
Grain Weight ◽  
Canonical Variate ◽  
Potential Donor ◽  
Mean Values ◽  
Cluster Distance ◽  
Rice Genotypes ◽  
1000 Grain Weight

The experiment was conducted under the agro-ecological zone of Modhupur Tract (AEZ-28) to determine the genetic diversity among 39 rice genotypes, collected from Bangladesh Rice Research Institute, Lal Teer Seed Ltd. and Chittagong Hill Tracts. The genotypes were grouped into six clusters based on Mahalanobis’s D2 statistics and Canonical Variate Analysis. Cluster I consisted with the highest number of (11) genotypes from different origin, whereas cluster IV consisted with the lowest number of (3) genotypes. Cluster III consisted of BRRI dhan 28, BRRI dhan 45, Gold, Tia, Dowel and Moyna showed maximum mean yield. Maximum inter cluster distance was recorded between cluster II and cluster III. The highest inter genotypic distance was observed between Tharak dhan and BRRI dhan 45. Cluster III had the highest mean values for grain yield, harvest index, 1000-grain weight and number of effective tillers per hill and cluster V for number of primary branches per panicle and cluster VI for number of filled grains per panicle that had significant positive correlation with grain yield. Number of unfilled grains per panicle, 1000-grain weight and grain yield showed maximum contribution towards genetic divergence. The genotypes from these clusters with desirable characters may be used as potential donor for future hybridization program to develop high yielders.DOI: http://dx.doi.org/10.3329/bjpbg.v25i1.17010

scholarly journals Morphomolecular Characterization of Local Boro Rice (Oryza Sativa L.) Germplasm

2016 ◽  
Vol 29 (2) ◽  
pp. 01-09
Author(s):  
T. Halder ◽  
M. E. Hoque ◽  
M. M. Islam ◽  
L. Ali ◽  
A. K. Chowdhury
Keyword(s):  
Oryza Sativa ◽  
Morphological Traits ◽  
Oryza Sativa L ◽  
Polymorphic Information Content ◽  
Growth Duration ◽  
Allele Number ◽  
Simple Sequence ◽  
1000 Grain Weight ◽  
Boro Rice

An investigation was carried out to analysis the genetic diversity of 12 Bangladeshi local Boro rice (Oryza sativa L.) germplasm using morphological traits and molecular markers. Eight morphological traits (viz., days to 50 percent flowering, growth duration, plant height, filled grain/panicle, 1000 grain weight and grain yield) and eight Simple Sequence Repeat (SSR) markers were used for this analysis. The plant morphological traits exhibited more variation among the genotypes tested. Several traits were found to be significantly positive in correlation coefficient analysis and thus those traits can be considered stable as demonstrated by their coefficient of variability. A set of eight SSR primer pairs was used for molecular characterization resulting 49 alleles, where average of allele number was 6.13. The polymorphic information content (PIC) values ranged from 0.67 (RM1) to 0.86 (RM314) with an average of 0.76. The highest PIC value (0.86) was obtained for RM314 which also gave maximum alleles. The PIC value revealed that RM314 was the best marker for 12 genotypes tested. The cluster analysis based on UPGMA system grouped 12 genotypes into four clusters.

scholarly journals Genetic diversity assessment of Rice (Oryza sativa L.) germplasm using ssr markers

2015 ◽  
Vol 1 (1) ◽  
pp. 37-46 ◽  
Author(s):  
Ahasanul Hoque ◽  
Shamsun Nahar Begum ◽  
Lutful Hassan
Keyword(s):  
Genetic Diversity ◽  
Ssr Markers ◽  
Oryza Sativa L ◽  
Growth Duration ◽  
Breeding Programs ◽  
Diversity Assessment ◽  
Days To Heading ◽  
Early Maturing ◽  
Rice Genotypes ◽  
Selection Of

Diversity at molecular level among thirty rice genotypes, selected based on earliness and morphometric diversity was evaluated through five SSR markers associated with days to heading. Three primers viz., RM147, RM167 and RM215 showed polymorphism for growth duration related traits. A total of 17 alleles were detected among the 30 rice genotypes with an average of 5.66 alleles per locus. Polymorphism Information Content (PIC) ranged from 0.356 to 0.798 with an average of 0.543. A dendrogram based on total microsatellite polymorphism grouped 30 genotypes into four major clusters at 0.39 similarity coefficient differentiating early maturing genotypes from others. This information about the genetic diversity will be very useful for proper identification and selection of appropriate parents for future breeding programs, including gene mapping. The results also showed that microsatellite markers associated to genes or QTLs controlling growth duration properties are suitable tools for marker assisted selection (MAS) to select rice lines with short growth duration. DOI: http://dx.doi.org/10.3329/ralf.v1i1.22354 Res. Agric., Livest. Fish.1(1): 37-46, Dec 2014

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