scholarly journals Genetic Diversity in Aus rice (Oryza sativa L.) Genotypes of Bangladesh

2018 ◽  
Vol 43 (2) ◽  
pp. 253-266
Author(s):  
N Akter ◽  
H Begum ◽  
MZ Islam ◽  
MA Siddique ◽  
M Khalequzzaman
Keyword(s):  
Genetic Diversity ◽  
Oryza Sativa ◽  
Genetic Distance ◽  
Oryza Sativa L ◽  
Mean Value ◽  
Tiller Number ◽  
Cluster Distance ◽  
Transgressive Segregants ◽  
Rice Genotypes ◽  
High Genetic Distance

Genetic diversity in 31 traditional Bangladeshi Aus rice genotypes were studied under transplanted condition through Mahalanobis D2 statistic for grain yield and yield contributing characters. The genotypes were grouped into five clusters. The inter-cluster distances were higher than intra-cluster distances indicating wider genetic diversity among the genotypes of different clusters. The intra-cluster distances were lower in all the cases reflecting homogeneity of the genotypes within the clusters. The cluster II contained the highest number of genotypes (08) and the cluster I and III contained the lowest (05). The highest intra-cluster distance was noticed for the cluster II and the lowest for cluster IV. The highest inter-cluster distance was observed between cluster II and V followed by cluster III and V, cluster I and V and the lowest between cluster I and III. Regarding inter-cluster distance, the genotypes of cluster V showed high genetic distance from all other clusters. The genotypes from cluster V could be hybridized with the genotypes of other characters of other clusters for producing transgressive segregants. The highest cluster means for yield, effective tiller number and grain length, were obtained from cluster I; whereas the lowest mean value for yield, culm length, plant height and grain breadth were found in cluster II. Therefore, genotypes under cluster I, cluster II and cluster V might be selected for future breeding program as parents for crossing to produce new recombinants with desired traits.Bangladesh J. Agril. Res. 43(2): 253-266, June 2018

scholarly journals Genetic Diversity of Boro Rice (Oryza sativa L.) Landraces in Bangladesh

2016 ◽  
Vol 29 (2) ◽  
pp. 33-40 ◽  
Author(s):  
N. Akter ◽  
M. Z. Islam ◽  
M. A. Siddique ◽  
T. Chakrabarty ◽  
M. Khalequzzaman ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Oryza Sativa ◽  
Oryza Sativa L ◽  
Flag Leaf ◽  
Growth Duration ◽  
Cluster Distance ◽  
Transgressive Segregants ◽  
Rice Genotypes ◽  
1000 Grain Weight ◽  
Boro Rice

Genetic diversity of 45 traditional Bangladeshi boro rice genotypes was studied through Mahalanobis D2 statistics and was grouped into six clusters. The inter-cluster distances were higher than intra-cluster distances indicating wider genetic diversity among the genotypes of different clusters. The intra-cluster distances were lower in all the cases reflecting homogeneity of the genotypes within the cluster. The cluster V contained the highest number of genotypes (14) and the cluster I and VI contained the lowest (4) number. The highest intra-cluster distance was noticed for the cluster VI and the lowest for cluster V. The highest inter-cluster distance was observed between cluster I and VI followed by cluster II and VI, cluster I and V and the lowest between cluster II and IV. The genotypes from cluster VI could be selected as parents for hybridization for producing transgressive segregants. The highest cluster means for yield, grains per panicle and grain length-breath ratio were obtained from cluster I; whereas higher yield, grain breath, 1000 grain weight, flag leaf area, shortest growth duration were obtained from cluster V. Therefore, more emphasis should be given on cluster I, cluster V and cluster VI for selecting genotypes as parents to produce new recombinants with desired traits.

Assessment of molecular divergence using microsatellite markers linked to drought-yield QTLs of rice (Oryza sativa L.)

2020 ◽  
Vol 57 (2) ◽  
pp. 94-99
Author(s):  
ND Rathan ◽  
SK Singh ◽  
RK Singh ◽  
PR Vennela
Keyword(s):  
Genetic Diversity ◽  
Oryza Sativa ◽  
Oryza Sativa L ◽  
Polymorphic Marker ◽  
Polymorphic Markers ◽  
Rainfed Conditions ◽  
Transgressive Segregants ◽  
Rice Genotypes ◽  
Contemporary Study ◽  
Selection Of

The drought stress is the major limitation for the production and yield stability in the rice (Oryza sativa L.) growing areas particularly under rainfed conditions. The assessment of genetic diversity among the rice genotypes using molecular markers linked to drought-yield QTLs will help in the selection of divergent parents to produce superior recombinants and transgressive segregants to develop high yielding cultivars for drought conditions. So the current study was conducted to estimate the genetic diversity among the set of twenty four advanced drought tolerent rice genotypes and commercial checks using SSR markers linked to major drought-yield QTLs. A total of 31 alleles were detected by 13 polymorphic markers across 24 rice genotypes with a mean of 1.94 alleles per polymorphic marker. Among the polymorphic markers, 11 markers formed 2 alleles each, 2 markers have produced 3 alleles each. The PIC value observed in the contemporary study ranged from 0.239 to 0.499 with an average PIC value of 0.346. The dendrogram displayed a total five clusters on the basis of dissimilarity coefficient values, the cluster II had maximum ten genotypes followed by cluster IB-a with five genotypes and clusters IA-a, IA-b, IB-b with three genotypes each. IR 82475-110-2-2-1-2 and IR92937-178-2-2 (R-155) were found to be the most divergent genotypes.

scholarly journals Genetic Diversity of Local Rainfed Rice (Oryza Sativa L.)

1970 ◽  
Vol 23 (2) ◽  
pp. 41-46 ◽  
Author(s):  
MA Siddique ◽  
ESMH Rashid ◽  
M Khalequzzaman ◽  
MZ Islam ◽  
MS Ahmed ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Oryza Sativa ◽  
Plant Height ◽  
Oryza Sativa L ◽  
Flag Leaf ◽  
Mean Value ◽  
Leaf Length ◽  
Panicle Length ◽  
Rainfed Rice ◽  
Cluster Distance

Genetic diversity of 58 traditional local rice genotypes was studied under rainfed condition through Mahalanobis D2 statistic for grain yield and yield contributing characters. The genotypes were grouped into nine clusters. The inter-cluster distances were higher than intra-cluster distances indicating wider genetic diversity among the genotypes of different clusters. The intra-cluster distances were lower in all the cases reflecting homogeneity of the genotypes within the clusters. The cluster III contained the highest number of genotypes (13) and the cluster I contained the lowest (2). The highest intra-cluster distance was noticed for the cluster I and the lowest for cluster VII. The highest inter-cluster distance was observed between cluster I and IV followed by cluster IX and IV, cluster I and VI and the lowest between cluster V and III. Regarding inter-cluster distance, the genotypes of cluster IV showed high genetic distance from all other clusters. The genotypes from cluster IV could be hybridized with the genotypes of other characters of other clusters for producing transgressive segregants. Based on positive value of vector 1 and vector 2, flag leaf length, plant height, panicle length and grain breath had maximum contribution towards genetic divergence. The highest cluster means for yield, 1000 grain weight and grain breath were obtained from cluster VIII. The highest plant height, flag leaf width and panicle length were found in cluster II while the lowest mean value for yield, days to flowering and maturity, unfilled grain and the highest mean value for grain length breadth ratio were found in cluster II. Therefore, more emphasis should be given on cluster IV and cluster VIII, cluster I and cluster IV for selecting genotypes as parents for crossing with the genotypes of cluster II which would be used to produce new recombinants with desired traits.   Key words: Genetic diversity; D2 analysis; cluster analysis; rice (Oryza sativa L)DOI: http://dx.doi.org/10.3329/bjpbg.v23i2.9324 Bangladesh J. Pl. Breed. Genet., 23(2): 41-46, 2010

scholarly journals GENETIC DIVERSITY OF BALAM AND JESSO-BALAM RICE (Oryza sativa L.) GERMPLASM OF BANGLADESH REVEALED BY SSR MARKERS

2016 ◽  
Vol 27 (2) ◽  
pp. 17-24
Author(s):  
M. S. Ahmed ◽  
M. Khalequzzaman ◽  
M. K. Bashar ◽  
A. K. M. Shamsuddin
Keyword(s):  
Genetic Diversity ◽  
Oryza Sativa ◽  
Genetic Distance ◽  
Ssr Markers ◽  
Oryza Sativa L ◽  
Gene Diversity ◽  
Clustering Method ◽  
Land Races ◽  
Rice Genotypes

A total of 72 rice genotypes including Balam (40), Jesso-Balam (27) rice land races and popular varieties (5) from Bangladesh were characterized using 45 SSR markers for studying genetic diversity and identification of duplicate germplasm. Altogether 430 alleles were detected which varied from 4 to 18 per locus with an average of 9.6. The highest number of alleles (18) was found in the locus RM302. The highest gene diversity (0.91) was found in RM337 and RM224, while the lowest (0.52) was found in RM237. The PIC values ranged from 0.90 to 0.46 with an average of 0.78. The highest PIC value was observed in loci RM337 and RM224 followed by 0.89 in RM55, RM258, RM21 and RM206, respectively. The gene diversity and PIC values revealed that RM337, RM224, RM55, RM258, RM21 and RM206 were the best markers to identify and distinguish the genotypes. Besides, the UPGMA clustering method generated seven clusters, where no duplicate genotype was found. It also showed that Balam and Jesso-Balam groups of germplasm were constellated into separate clusters. The Nei’s genetic distance ranged from 0.3556 to 1.0. Conserved, characterization and utilization of the unique and distinct variability of all the similar or duplicate named land races of Balam and Jesso-Balam rice is suggested.

scholarly journals Genetic diversity analysis of parental lines for hybrid development in rice (Oryza sativa L.)

2013 ◽  
Vol 37 (4) ◽  
pp. 617-624 ◽  
Author(s):  
MJ Hasan ◽  
Umma Kulsum ◽  
MMH Rahman ◽  
MMH Chowdhury ◽  
AZMKA Chowdhury
Keyword(s):  
Genetic Diversity ◽  
Oryza Sativa L ◽  
Principal Component ◽  
Mean Value ◽  
Cluster Distance ◽  
Parental Lines ◽  
Almost All ◽  
Yield Maximization ◽  
Hybrid Development ◽  
Panicle Weight

Genetic divergence of 40 parental lines comprising 30 restorer and 10 maintainer lines were studied through Mohalanobis's D2 and principal component analysis for eleven characters. Genotypes were grouped into five different clusters. Cluster V comprised maximum number of genotypes (thirteen) followed by cluster I and II. The inter-cluster distance was maximum between clusters I and V (13.495) indicating wide genetic diversity between these two clusters followed by the distance between cluster I and 11 (9.489), cluster IV, and cluster V (8.969) and cluster I and cluster III (8.039). The minimum inter-cluster distance was observed between cluster II and cluster III (3.034) followed by cluster 111 and cluster IV (3.834) and cluster II and cluster V (4.945) indicating that the genotypes of these clusters were genetically close. The intra cluster distance in the entire five clusters was more or less low which indicated that the genotypes within the same cluster were closely related. Among the characters panicle weight contributed most for divergence in the studied parental lines. Difference in cluster means existed for almost all the characters studied. Highest mean value for number of effective tillers (7.8), days to 50% flowering (95.5), panicles/m2 (192.6), panicle weight (2.9), spikelet fertility (84.8), number of grains/panicle (177.8), days to maturity (123.6), and grain yield/plot (1065.5) were observed in cluster I indicated the parental lines fallen in this cluster having the genetic potentiality to contribute better for yield maximization of hybrid rice. DOI: http://dx.doi.org/10.3329/bjar.v37i4.14386 Bangladesh J. Agril. Res. 37(4): 617-624, December 2012

scholarly journals Genetic Diversity of Bacterial Blight Resistant Rice (Oryza sativa L.) Genotypes from INGER

2020 ◽  
Vol 23 (2) ◽  
pp. 59-64
Author(s):  
F Akter ◽  
MZ Islam ◽  
A Akter ◽  
SK Debsharma ◽  
A Shama ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Bacterial Blight ◽  
Oryza Sativa L ◽  
Mean Value ◽  
Grain Weight ◽  
Yield Potential ◽  
Growth Duration ◽  
Panicle Number ◽  
Cluster Distance ◽  
1000 Grain Weight

Genetic diversity of 65 rice genotypes was studied from IRBBN (International Rice Bacterial Blight Nursery) of INGER (International Network for Genetic Evaluation of Rice) materials through Mahalanobis D2 statistic for grain yield and yield contributing characters. The genotypes were grouped into five clusters. The inter-cluster distances were higher than intra-cluster distances indicating wider genetic diversity among the genotypes of different clusters. The intra-cluster distances were lower in all the cases reflecting homogeneity of the genotypes within the clusters. The cluster III contained the highest number of genotypes (23) and the clusterv contained the lowest (8). The highest intra-cluster distance was noticed for the cluster I and lowest for cluster III. The highest inter-cluster distance was observed between cluster I and V, followed by cluster IV and V, cluster II andV and the lowest between cluster I and IV. Regarding inter-cluster distance, the genotypes of cluster V showed high genetic distance from all other clusters. The genotypes from cluster V could be hybridized with the genotypes of other clusters for producing transgressive segregants. Based on canonical vector analysis, panicle number per plant had maximum contribution towards genetic divergence. The highest cluster means for yield, grain/panicle and spikelet fertility were obtained from cluster V. The highest means for 1000 grain weight, second higher yield and the lowest growth duration were found in cluster II, while the lowest mean value for yield and 1000 grain weight and higher mean value for growth duration were found in cluster IV. The crosses between the genotypes/parents of cluster V and cluster II, cluster V and cluster I would exhibit high heterosis as well as higher level of yield potential. Therefore, more emphasis should be given for selection of the genotypes from clusters II and V for future breeding programme. Bangladesh Rice j. 2019, 23(2): 59-64

scholarly journals Genetic Diversity of Selected Upland Rice Genotypes (Oryza sativa L.) for Grain Yield and Related Traits

2018 ◽  
Vol 22 (5) ◽  
pp. 1-9 ◽  
Author(s):  
Christian Anyaoha ◽  
Felix Adegbehingbe ◽  
Uyokei Uba ◽  
Bosede Popoola ◽  
Vernon Gracen ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Oryza Sativa ◽  
Grain Yield ◽  
Upland Rice ◽  
Oryza Sativa L ◽  
Rice Genotypes

scholarly journals Genetic Diversity Analysis by D2 Analysis in Fine Scented Genotypes of Rice (Oryza sativa L.)

2021 ◽  
Vol 10 (11) ◽  
pp. 48-55
Author(s):  
V. Netam S. K. Sinha ◽  
K. Tigga V. K. Singh ◽  
N. Chouksey
Keyword(s):  
Genetic Diversity ◽  
Cluster Analysis ◽  
Oryza Sativa ◽  
Oryza Sativa L ◽  
Diversity Analysis ◽  
Genetic Diversity Analysis ◽  
Cluster Distance

The present investigation on “Diversity analysis by D2 analysis in fine scented genotypes of rice (Oryza sativa L.)” was used to investigate the diversity among 40 fine scented genotypes obtained from the Indira Gandhi Krishi Vishwavidyalaya in Raipur. The current studies was conducted at research cum instructional farm, IGKV, RMD Ambikapur, Chhattisgarh. The experiment was conducted in RBD with purpose to characterized 40 genotypes of rice along with 4 checks viz. CG Sugandhitbhog, CG Devbhog, Indira Sugandhit Dhan-1 and Dubrajsel 1 for diversity. Based on cluster analysis, the genotypes were grouped into 5 clusters in which cluster I was the largest consistin of 29 genotypes. While cluster IV & V were the smallest with only a single genotypes; each. Maximum intra cluster distance was found in the cluster II, Which comprises only 5 genotypes. The most divergent clusters observed were cluster III & V. The minimum cluster distance was recorded between cluster I & III.

scholarly journals GENETIC DIVERSITY AND PARENTS SELECTION FROM EXOTIC RICE (Oryza sativa L.) GERMPLASM

2012 ◽  
Vol 25 (1) ◽  
pp. 11-16
Author(s):  
A. A. Mamun ◽  
N. A. Ivy ◽  
M. G. Rasul ◽  
M. M. Hossain
Keyword(s):  
Genetic Diversity ◽  
Principal Component Analysis ◽  
Cluster Analysis ◽  
Oryza Sativa ◽  
Oryza Sativa L ◽  
Principal Component ◽  
Component Analysis ◽  
Rice Genotypes ◽  
Total Divergence ◽  
Five Axes

Genetic divergence among fifty exotic rice genotypes along with two check varieties were estimated using D2 and principal component analysis. The study was undertaken to select suitable donor parents for use in improved breeding program of Bangabandhu Sheikh Mujibur Rahman Agricultural University in 2009. Principal component analysis (PCA) revealed that the first five axes accounted for 58.10% of the total variation. As per cluster analysis, the genotypes were grouped into seven clusters consisting 11, 16, 7, 11, 1, 2 and 4 genotypes which revealed that there exist considerable diversity among the genotypes. Considering the magnitude of genetic distance, contribution of different characters towards the total divergence and magnitude of cluster means for different characters, the genotypes RG-BU-08-057, 61, 65, 67, 69, 71, 85, 86, 88, 94, 96, 98 and 99 might be selected as a suitable parent for future hybridization program.DOI: http://dx.doi.org/10.3329/bjpbg.v25i1.17007

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