scholarly journals Microbial Alkalinity Production and Silicate Alteration in Methane Charged Marine Sediments: Implications for Porewater Chemistry and Diagenetic Carbonate Formation

2022 ◽  
Vol 9 ◽  
Author(s):  
Patrick Meister ◽  
Gerhard Herda ◽  
Elena Petrishcheva ◽  
Susanne Gier ◽  
Gerald R. Dickens ◽  
...  
Keyword(s):  
Transport Model ◽  
Total Alkalinity ◽  
Anaerobic Oxidation Of Methane ◽  
Deep Biosphere ◽  
Ocean Drilling Program ◽  
Oxidation Of Methane ◽  
Carbonate Formation ◽  
Reaction Transport ◽  
The Stability ◽  
Fundamental Insight

A numerical reaction-transport model was developed to simulate the effects of microbial activity and mineral reactions on the composition of porewater in a 230-m-thick Pleistocene interval drilled in the Peru-Chile Trench (Ocean Drilling Program, Site 1230). This site has porewater profiles similar to those along many continental margins, where intense methanogenesis occurs and alkalinity surpasses 100 mmol/L. Simulations show that microbial sulphate reduction, anaerobic oxidation of methane, and ammonium release from organic matter degradation only account for parts of total alkalinity, and excess CO2 produced during methanogenesis leads to acidification of porewater. Additional alkalinity is produced by slow alteration of primary aluminosilicate minerals to kaolinite and SiO2. Overall, alkalinity production in the methanogenic zone is sufficient to prevent dissolution of carbonate minerals; indeed, it contributes to the formation of cemented carbonate layers at a supersaturation front near the sulphate-methane transition zone. Within the methanogenic zone, carbonate formation is largely inhibited by cation diffusion but occurs rapidly if cations are transported into the zone via fluid conduits, such as faults. The simulation presented here provides fundamental insight into the diagenetic effects of the deep biosphere and may also be applicable for the long-term prediction of the stability and safety of deep CO2 storage reservoirs.

Microbial alkalinity production and clay mineral alteration in marine methanogenic sediments: implications for diagenetic carbonate formation

2020 ◽  
Author(s):  
Gerhard Herda ◽  
Elena Petrishcheva ◽  
Susanne Gier ◽  
Bo Liu ◽  
Patrick Meister
Keyword(s):  
Microbial Activity ◽  
Transport Model ◽  
Deep Biosphere ◽  
Ocean Drilling Program ◽  
Carbonate Formation ◽  
Storage Reservoirs ◽  
Ammonium Production ◽  
Reaction Transport ◽  
The Stability ◽  
Fundamental Insight

<p>A numerical reaction transport model was developed to simulate the effects of microbial activity and mineral reactions on the composition of the porewater in a 150-m-thick sedimentary interval drilled in the Peruvian deep-sea trench (Ocean Drilling Program, Site 1230). This site shows a zone of intense methanogenesis below 10 m sediment depth. The simulation shows that microbial activity accounts for most alkalinity production of up to 150 mmol/l, while the excess of CO<sub>2</sub> produced during methanogenesis causes a strong acidification of the porewater. Ammonium production from organic matter degradation significantly contributes to alkalinity production, whereby ion exchange was simulated to compensate for hidden ammonium production not otherwise accounted for. Although clay minerals are reacting far too slowly to equilibrate with the porewater over millions of years, additional alkalinity is provided by alteration of chlorite, illite, and feldspar to kaolinite. Overall, alkalinity production in methanogenic zones is sufficient to prevent dissolution of carbonates and to induce carbonate formation either continuously as disseminated cryptic dolomite or episodically as hard lithified beds along a supersaturation front. The simulation presented here provides fundamental insight into the diagenetic effects of the deep biosphere and may also be applicable for the long-term prediction of the stability and safety of deep CO<sub>2</sub> storage reservoirs.</p><p> </p>

scholarly journals Modelling the impact of Siboglinids on the biogeochemistry of the Captain Arutyunov mud volcano (Gulf of Cadiz)

2012 ◽  
Vol 9 (6) ◽  
pp. 6683-6714
Author(s):  
K. Soetaert ◽  
D. van Oevelen ◽  
S. Sommer
Keyword(s):  
Transport Model ◽  
Sulfide Oxidation ◽  
Mud Volcano ◽  
Biogeochemical Model ◽  
Anaerobic Oxidation Of Methane ◽  
Anaerobic Oxidation ◽  
Oxidation Of Methane ◽  
Sediment Biogeochemistry ◽  
Reaction Transport ◽  
The Impact

Abstract. A 2-Dimensional mathematical reaction-transport model was developed to study the impact of the mud-dwelling frenulate tubeworm Siboglinum sp. on the biogeochemistry of a sediment (MUC15) at the Captain Arutyunov mud volcano (CAMV). By explicitly describing the worm in its surrounding sediment, we are able to make budgets of processes occurring in- or outside of the worm, and to quantify how different worm densities and biomasses affect the anaerobic oxidation of methane (AOM) and sulfide reoxidation (HSox). The model shows that, at the observed densities, the presence of a thin worm body is sufficient to keep the upper 10 cm of sediment well homogenized with respect to dissolved substances, in agreement with observations. By this "bio-ventilation" activity, the worm pushes the sulfate-methane transition (SMT) zone downward to the posterior end of its body, and simultaneously physically separates the sulfide produced during the anaerobic oxidation of methane from oxygen. While there is little scope for the AOM to take place in the tubeworm's body, 70% of the sulfide that is produced by sulfate reduction processes or that is advected in the sediment is preferentially shunted via the organism where it is oxidised by endosymbionts providing the energy for the worm's growth. The process of sulfide reoxidation, occurring predominantly in the worm's body is thus very distinct from the anaerobic oxidation of methane, which is a diffuse process that takes place in the sediments in the methane-sulfate transition zone. We show how the sulfide oxidation process is affected by increasing densities and length of the frenulates, and by upward advection velocity. Our biogeochemical model is one of the first to describe tubeworms explicitly. It can be used to directly link biological and biogeochemical observations at seep sites, and to study the impacts of mud-dwelling frenulates on the sediment biogeochemistry under varying environmental conditions. Also, it provides a tool to explore the competition between bacteria and fauna for available energy resources.

scholarly journals Modelling the impact of Siboglinids on the biogeochemistry of the Captain Arutyunov mud volcano (Gulf of Cadiz)

2012 ◽  
Vol 9 (12) ◽  
pp. 5341-5352 ◽  
Author(s):  
K. Soetaert ◽  
D. van Oevelen ◽  
S. Sommer
Keyword(s):  
Transport Model ◽  
Sulfide Oxidation ◽  
Mud Volcano ◽  
Biogeochemical Model ◽  
Anaerobic Oxidation Of Methane ◽  
Anaerobic Oxidation ◽  
Oxidation Of Methane ◽  
Sediment Biogeochemistry ◽  
Reaction Transport ◽  
The Impact

Abstract. A 2-Dimensional mathematical reaction-transport model was developed to study the impact of the mud-dwelling frenulate tubeworm Siboglinum sp. on the biogeochemistry of a~sediment (MUC15) at the Captain Arutyunov mud volcano (CAMV). By explicitly describing the worm in its surrounding sediment, we are able to make budgets of processes occurring in- or outside of the worm, and to quantify how different worm densities and biomasses affect the anaerobic oxidation of methane (AOM) and sulfide reoxidation (HSox). The model shows that, at the observed densities, the presence of a thin worm body is sufficient to keep the upper 10 cm of sediment well homogenised with respect to dissolved substances, in agreement with observations. By this "bio-ventilation" activity, the worm pushes the sulfate–methane transition (SMT) zone downward to the posterior end of its body, and simultaneously physically separates the sulfide produced during the anaerobic oxidation of methane from oxygen. While there is little scope for AOM to take place in the tubeworm's body, 70% of the sulfide that is produced by sulfate reduction processes or that is advected in the sediment is preferentially shunted via the organism where it is oxidised by endosymbionts providing the energy for the worm's growth. The process of sulfide reoxidation, occurring predominantly in the worm's body is thus very distinct from the anaerobic oxidation of methane, which is a diffuse process that takes place in the sediments in the methane-sulfate transition zone. We show how the sulfide oxidation process is affected by increasing densities and length of the frenulates, and by upward advection velocity. Our biogeochemical model is one of the first to describe tubeworms explicitly. It can be used to directly link biological and biogeochemical observations at seep sites, and to study the impacts of mud-dwelling frenulates on the sediment biogeochemistry under varying environmental conditions. Also, it provides a tool to explore the competition between bacteria and fauna for available energy resources.

scholarly journals Fracture-controlled fluid transport supports microbial methaneoxidizing communities at the Vestnesa Ridge

2018 ◽  
Author(s):  
Haoyi Yao ◽  
Wei-Li Hong ◽  
Giuliana Panieri ◽  
Simone Sauer ◽  
Marta E. Torres ◽  
...  
Keyword(s):  
Fluid Transport ◽  
Surface Sediments ◽  
Dissolved Inorganic Carbon ◽  
Total Alkalinity ◽  
Anaerobic Oxidation Of Methane ◽  
Gas Migration ◽  
Near Surface ◽  
Recent Onset ◽  
Oxidation Of Methane ◽  
Lipid Biomarker

Abstract. We report on a rare observation of a mini-fracture in near-surface sediments (30 cm below the seafloor) visualized using rotational scanning X-ray of a core recovered from the Lomvi pockmark, Vestnesa Ridge west of Svalbard (1200 m water depth). Porewater geochemistry and lipid biomarker signatures revealed clear differences in the geochemical and biogeochemical regimes of this core compared with two additional ones recovered from pockmarks sites at Vestnesa Ridge, which we attribute to differential methane transport mechanisms. In the sediments core featuring the shallow mini-fracture at pockmark Lomvi, we observed high concentrations of both methane and sulfate throughout the core in tandem with moderately elevated values for total alkalinity, 13C-depleted dissolved inorganic carbon (DIC), and 13C-depleted lipid biomarkers (diagnostic for the slow-growing microbial communities mediating the anaerobic oxidation of methane with sulfate – AOM). In another core recovered from the same pockmark about 80 m away from the fractured core, we observed complete sulfate depletion in the top centimeters of the sediment and much more pronounced signatures of AOM than in the fractured core. Our data indicate a gas advection-dominated transport mode in both cores facilitating methane migration into sulfate-rich surface sediments. However, the more moderate expression of AOM signals suggest a rather recent onset of gas migration at the site of the fractured core, while the geochemical evidence for a well-established AOM community at the second coring site at the Lomvi pockmark suggest that gas migration has been going on for a longer period of time. A third core recovered from Lunde pockmark was dominated by diffusive transport with only weak geochemical and biogeochemical evidence for AOM. Our study highlights that advective fluid and gas transport supported by mini-fractures can be important in modulating methane dynamics in surface sediments.

Carbonate formation by anaerobic oxidation of methane: Evidence from lipid biomarker and fossil 16S rDNA

2008 ◽  
Vol 72 (7) ◽  
pp. 1824-1836 ◽  
Author(s):  
A. Stadnitskaia ◽  
D. Nadezhkin ◽  
B. Abbas ◽  
V. Blinova ◽  
M.K. Ivanov ◽  
...  
Keyword(s):  
16S Rdna ◽  
Anaerobic Oxidation Of Methane ◽  
Anaerobic Oxidation ◽  
Oxidation Of Methane ◽  
Carbonate Formation ◽  
Lipid Biomarker

scholarly journals Methane emission and consumption at a North Sea gas seep (Tommeliten area)

2005 ◽  
Vol 2 (4) ◽  
pp. 1197-1241 ◽  
Author(s):  
H. Niemann ◽  
M. Elvert ◽  
M. Hovland ◽  
B. Orcutt ◽  
A. Judd ◽  
...  
Keyword(s):  
North Sea ◽  
Oil And Gas ◽  
Salt Diapir ◽  
Anaerobic Oxidation Of Methane ◽  
Cold Seeps ◽  
The North ◽  
Oxidation Of Methane ◽  
Phylogenetic Cluster ◽  
Carbonate Formation ◽  
Gas Seepage

Abstract. The North Sea hosts large coal, oil and gas reservoirs of commercial value. Natural leakage pathways of subsurface gas to the hydrosphere have been recognized during geological surveys (Hovland and Judd, 1988). The Tommeliten seepage area is part of the Greater Ekofisk area, which is situated above the Tommeliten Delta salt diapir in the central North Sea. In this study, we report of an active seep site (56°29.90'N, 2°59.80'E) located in the Tommeliten area, Norwegian Block 1/9, at 75 m water depth. Here, cracks in a buried marl horizon allow methane to migrate into overlying clay-silt and sandy sediments. Hydroacoustic sediment echosounding showed several venting spots coinciding with the apex of marl domes where methane is released into the water column and potentially to the atmosphere during deep mixing situations. In the vicinity of the gas seeps, sea floor observations showed small mats of giant sulphide-oxidizing bacteria above patches of black sediments and carbonate crusts, which are exposed 10 to 50 cm above seafloor forming small reefs. These Methane-Derived Authigenic Carbonates (MDACs) contain 13C-depleted, archaeal lipids indicating previous gas seepage and AOM activity. High amounts of sn2-hydroxyarchaeol relative to archaeol and low abundances of biphytanes in the crusts give evidence that ANaerobic MEthane-oxidising archaea (ANME) of the phylogenetic cluster ANME-2 were the potential mediators of Anaerobic Oxidation of Methane (AOM) at the time of carbonate formation. Small pieces of MDACs were also found subsurface at about 1.7 m sediment depth, associated with the Sulphate-Methane Transition Zone (SMTZ). The SMTZ of Tommeliten is characterized by elevated AOM and Sulphate Reduction (SR) rates, increased concentrations of 13C-depleted tetraether derived biphytanes, and specific bacterial Fatty Acids (FA). Further biomarker and 16S rDNA based analyses give evidence that AOM at the Tommeliten SMTZ is mediated by archaea belonging to the ANME-1b group and Sulphate Reducing Bacteria (SRB) most likely belonging to the Seep-SRB1 cluster. The zone of active methane consumption was restricted to a distinct horizon of about 20 cm. Concentrations of 13C-depleted lipid biomarkers (e.g. 500 ng g-dw-1 biphythanes, 140 ng g-dw-1 fatty acid ai-C15:0), cell numbers (1.5x108 cells cm-3), AOM and SR rates (3 nmol cm-3 d-1 in the SMTZ are 2-3 orders of magnitude lower compared to AOM zones of highly active cold seeps such as Hydrate Ridge or the Gulf of Mexico.

scholarly journals Fracture-controlled fluid transport supports microbial methane-oxidizing communities at Vestnesa Ridge

2019 ◽  
Vol 16 (10) ◽  
pp. 2221-2232 ◽  
Author(s):  
Haoyi Yao ◽  
Wei-Li Hong ◽  
Giuliana Panieri ◽  
Simone Sauer ◽  
Marta E. Torres ◽  
...  
Keyword(s):  
Fluid Transport ◽  
Surface Sediments ◽  
Dissolved Inorganic Carbon ◽  
Total Alkalinity ◽  
Anaerobic Oxidation Of Methane ◽  
Gas Migration ◽  
Near Surface ◽  
Recent Onset ◽  
Oxidation Of Methane ◽  
Lipid Biomarker

Abstract. We report a rare observation of a mini-fracture in near-surface sediments (30 cm below the seafloor) visualized using a rotational scanning X-ray of a core recovered from the Lomvi pockmark, Vestnesa Ridge, west of Svalbard (1200 m water depth). Porewater geochemistry and lipid biomarker signatures revealed clear differences in the geochemical and biogeochemical regimes of this core compared with two additional unfractured cores recovered from pockmark sites at Vestnesa Ridge, which we attribute to differential methane transport mechanisms. In the sediment core featuring the shallow mini-fracture at pockmark Lomvi, we observed high concentrations of both methane and sulfate throughout the core in tandem with moderately elevated values for total alkalinity, 13C-depleted dissolved inorganic carbon (DIC), and 13C-depleted lipid biomarkers (diagnostic for the slow-growing microbial communities mediating the anaerobic oxidation of methane with sulfate – AOM). In a separate unfractured core, recovered from the same pockmark about 80 m away from the fractured core, we observed complete sulfate depletion in the top centimeters of the sediment and much more pronounced signatures of AOM than in the fractured core. Our data indicate a gas advection-dominated transport mode in both cores, facilitating methane migration into sulfate-rich surface sediments. However, the moderate expression of AOM signals suggest a rather recent onset of gas migration at the site of the fractured core, while the geochemical evidence for a well-established AOM community at the second coring site suggest that gas migration has been going on for a longer period of time. A third core recovered from another pockmark along the Vestnesa Ridge Lunde pockmark was dominated by diffusive transport with only weak geochemical and biogeochemical evidence for AOM. Our study highlights that advective fluid and gas transport supported by mini-fractures can be important in modulating methane dynamics in surface sediments.

scholarly journals The enigmatic ichnofossil <i>Tisoa siphonalis</i> and widespread authigenic seep carbonate formation during the Late Pliensbachian in southern France

2010 ◽  
Vol 7 (10) ◽  
pp. 3123-3138 ◽  
Author(s):  
B. van de Schootbrugge ◽  
D. Harazim ◽  
K. Sorichter ◽  
W. Oschmann ◽  
J. Fiebig ◽  
...  
Keyword(s):  
Carbon Isotope ◽  
Ct Scanning ◽  
Anaerobic Oxidation Of Methane ◽  
Southern France ◽  
Oxidation Of Methane ◽  
Carbonate Formation ◽  
Run Off ◽  
Carbonate Matrix ◽  
Geochemical Analyses ◽  
Isotope Analyses

Abstract. Tubular carbonate concretions of up to 1 m in length and perpendicular to bedding, occur abundantly in the Upper Pliensbachian (upper Amaltheus margaritatus Zone, Gibbosus Subzone) in outcrops (Fontaneilles section) in the vicinity of Rivière-sûr-Tarn, southern France. Stable isotope analyses of these concretions show negative δ13C values that decrease from the rim to the center from −18.8‰ to −25.7‰ (V-PDB), but normal marine δ18O values (−1.8‰). Carbon isotope analyses of Late Pliensbachian bulk carbonate (matrix) samples from the Fontaneilles section show clearly decreasing C-isotope values across the A. margaritatus Zone, from +1‰ to −3‰ (V-PDB). Isotope analyses of coeval belemnite rostra do not document such a negative C-isotope trend with values remaining stable around +2‰ (V-PDB). Computer tomographic (CT) scanning of the tubular concretions show multiple canals that are lined or filled entirely with pyrite. Previously, the formation of these concretions with one, two, or more central tubes, has been ascribed to the activity of an enigmatic organism, possibly with annelid or arthropod affinities, known asTisoa siphonalis. Our results suggest tisoan structures are abiogenic. Based on our geochemical analyses and sedimentological observations we suggest that these concretions formed as a combination of the anaerobic oxidation of methane (AOM) and sulfate reduction within the sediment. Fluids rich in methane and/or hydrocarbons likely altered local bulk rock carbon isotope records, but did not affect the global carbon cycle. Interestingly, Tisoa siphonalis has been described from many locations in the Grands Causses Basin in southern France, and from northern France and Luxemburg, always occurring at the same stratigraphic level. Upper Pliensbachian authigenic carbonates thus possibly cover an area of many thousand square kilometers. Greatly reduced sedimentation rates are needed to explain the stabilization of the sulfate-methane transition zone in the sedimentary column in order for the tubular concretions to form. Late Pliensbachian cooling, reducing run-off, and/or the influx of colder water and more vigorous circulation could be responsible for a halt in sedimentation. At the same time (thermogenic) methane may have destabilized during a major phase of Late Pliensbachian sea level fall. As such Tisoa siphonalis is more than a geological curiosity, and its further study could prove pivotal in understanding Early Jurassic paleoenvironmental change.

scholarly journals IODP Expedition 331: Strong and Expansive Subseafloor Hydrothermal Activities in the Okinawa Trough

2012 ◽  
Vol 13 ◽  
pp. 19-27 ◽  
Author(s):  
K. Takai ◽  
M. J. Mottl ◽  
S. H. H. Nielsen ◽  
Keyword(s):  
Okinawa Trough ◽  
Anaerobic Oxidation Of Methane ◽  
Microbial Oxidation ◽  
Ocean Drilling Program ◽  
The North ◽  
Oxidation Of Methane ◽  
Integrated Ocean Drilling Program ◽  
The Okinawa Trough ◽  
Alteration Minerals ◽  
Physical And Chemical

Integrated Ocean Drilling Program (IODP) Expedition 331 drilled into the Iheya North hydrothermal system in the middle Okinawa Trough in order to investigate active subseafloor microbial ecosystems and their physical and chemical settings. We drilled five sites during Expedition 331 using special guide bases at three holes for reentry, casing, and capping, including installation of a steel mesh platform with valve controls for postcruise sampling of fluids. At Site C0016, drilling at the base of the North Big Chimney (NBC) mound yielded low recovery, but core included the first Kuroko-type black ore ever recovered from the modern subseafloor. The other four sites yielded interbedded hemipelagic and strongly pumiceous volcaniclastic sediment, along with volcanogenic breccias that are variably hydrothermally altered and mineralized. At most sites, analyses of interstitial water and headspace gas yielded complex patterns with depth and lateral distance of only a few meters. Documented processes included formation of brines and vapor-rich fluids by phase separation and segregation, uptake of Mg and Na by alteration minerals in exchange for Ca, leaching of K at high temperature and uptake at low temperature, anhydrite precipitation, potential microbial oxidation of organic matter and anaerobic oxidation of methane utilizing sulfate, and methanogenesis. Shipboard analyses have found evidence for microbial activity in sediments within the upper 10–30 m below seafloor (mbsf) where temperatures were relatively low, but little evidence in the deeper hydrothermally altered zones and hydrothermal fluid regime. <br><br> doi:<a href="http://dx.doi.org/10.2204/iodp.sd.13.03.2011" target="_blank">10.2204/iodp.sd.13.03.2011</a>

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