scholarly journals Biofilm Interaction Mapping and Analysis (BIMA) of Interspecific Interactions in Pseudomonas Co-culture Biofilms

2021 ◽  
Vol 12 ◽  
Author(s):  
Suzanne M. Kosina ◽  
Peter Rademacher ◽  
Kelly M. Wetmore ◽  
Markus de Raad ◽  
Marcin Zemla ◽  
...  
Keyword(s):  
Contaminated Soil ◽  
Interspecific Interactions ◽  
Pseudomonas Stutzeri ◽  
Interspecific Interaction ◽  
Deletion Mutants ◽  
Mutant Library ◽  
Bacterial Strains ◽  
Chromium Vi ◽  
Pseudomonas Species ◽  
Aquaculture Management

Pseudomonas species are ubiquitous in nature and include numerous medically, agriculturally and technologically beneficial strains of which the interspecific interactions are of great interest for biotechnologies. Specifically, co-cultures containing Pseudomonas stutzeri have been used for bioremediation, biocontrol, aquaculture management and wastewater denitrification. Furthermore, the use of P. stutzeri biofilms, in combination with consortia-based approaches, may offer advantages for these processes. Understanding the interspecific interaction within biofilm co-cultures or consortia provides a means for improvement of current technologies. However, the investigation of biofilm-based consortia has been limited. We present an adaptable and scalable method for the analysis of macroscopic interactions (colony morphology, inhibition, and invasion) between colony-forming bacterial strains using an automated printing method followed by analysis of the genes and metabolites involved in the interactions. Using Biofilm Interaction Mapping and Analysis (BIMA), these interactions were investigated between P. stutzeri strain RCH2, a denitrifier isolated from chromium (VI) contaminated soil, and 13 other species of pseudomonas isolated from non-contaminated soil. One interaction partner, Pseudomonas fluorescens N1B4 was selected for mutant fitness profiling of a DNA-barcoded mutant library; with this approach four genes of importance were identified and the effects on interactions were evaluated with deletion mutants and mass spectrometry based metabolomics.

scholarly journals Biofilm Interaction Mapping and Analysis (BIMA): A tool for deconstructing interspecific interactions in co-culture biofilms

2021 ◽  
Author(s):  
Suzanne M Kosina ◽  
Peter Rademacher ◽  
Kelly M Wetmore ◽  
Markus de Raad ◽  
Marcin Zemla ◽  
...  
Keyword(s):  
Contaminated Soil ◽  
Interspecific Interactions ◽  
Pseudomonas Stutzeri ◽  
Interspecific Interaction ◽  
Deletion Mutants ◽  
Bacterial Strains ◽  
Chromium Vi ◽  
Pseudomonas Species ◽  
Aquaculture Management ◽  
Culture Growth

Pseudomonas species are ubiquitous in nature and include numerous medically, agriculturally and technologically beneficial strains of which the interspecific interactions are of great interest for biotechnologies. Specifically, co-cultures containing Pseudomonas stutzeri have been used for bioremediation, biocontrol, aquaculture management and wastewater denitrification. Furthermore, the use of P. stutzeri biofilms, in combination with consortia based approaches, may offer advantages for these processes. Understanding the interspecific interaction within biofilm co-cultures or consortia provides a means for improvement of current technologies. However, the investigation of biofilm based consortia has been limited. We present an adaptable and scalable method for the analysis of macroscopic interactions (colony morphology, inhibition and invasion) between colony forming bacterial strains using an automated printing method followed by analysis of the genes and metabolites involved in the interactions. Using Biofilm Interaction Mapping and Analysis (BIMA), these interactions were investigated between P. stutzeri strain RCH2, a denitrifier isolated from chromium (VI) contaminated soil, and thirteen other species of pseudomonas isolated from non-contaminated soil. The metabolites and genes associated with both active co-culture growth and inhibitory growth were investigated using mass spectrometry based metabolomics and mutant fitness profiling of a DNA-barcoded mutant library. One interaction partner, Pseudomonas fluorescens N1B4 was selected for mutant fitness profiling; with this approach four genes of importance were identified and the effects on interactions were evaluated with deletion mutants and metabolomics.

THE EFFECT OF BACTERIAL STRAINS ON THE ENZYMATIC ACTIVITY OF SOILS IN IMPACT ZONE OF ATAMAN LAKE

2020 ◽  
Author(s):  
V.V. Zinchenko ◽  
◽  
E.S Fedorenko ◽  
A.V Gorovtsov ◽  
T.M Minkina ◽  
...  
Keyword(s):  
Enzymatic Activity ◽  
Dehydrogenase Activity ◽  
Contaminated Soil ◽  
Model Experiment ◽  
Impact Zone ◽  
Bacterial Strains ◽  
The Impact

As a result of the model experiment, an increase in the enzymatic activity of meadow chernozem of the impact zone of Ataman Lake with the introduction of a strains mixture of metal-resistant microorganisms into the soil was established. The experiment has shown that the application of bacterial strains increases the dehydrogenase activity of contaminated soil by 51.8% compared to the variant without remediation

Bacterial Strains Isolated from Heavy Metals Contaminated Soil and Wastewater with Potential to Oxidize Arsenite

2021 ◽  
Vol 8 (1) ◽  
pp. 333-347
Author(s):  
Shahid Sher ◽  
Abdul Ghani ◽  
Sikandar Sultan ◽  
Abdul Rehman
Keyword(s):  
Heavy Metals ◽  
Contaminated Soil ◽  
Bacterial Strains

scholarly journals Antibiotic Susceptibility Pattern of Bacteria Isolated from an Urban Referral Hospital in Dhaka City

2016 ◽  
Vol 2 (2) ◽  
pp. 7-11
Author(s):  
M Mushfequr Rahman ◽  
J Ashraful Haq ◽  
MAH Golam Morshed ◽  
Farida Huq
Keyword(s):  
Antibiotic Susceptibility ◽  
Referral Hospital ◽  
Dhaka City ◽  
Bacterial Strains ◽  
Klebsiella Species ◽  
Acinetobacter Species ◽  
Pseudomonas Species ◽  
Judicious Choice ◽  
Almost All ◽  
First And Second Generation

The present study was to assess the pattern of antibiotic susceptibility of the isolated bacteria in an urban referral hospital in Dhaka City. A total of 393 bacterial strains were isolated from various specimens over a l0-months period. The majority of the organisms were Escherichia coli Q3.33oh) followed by Klebsiella species (27.480 ), Staphylococcas aureus (l7.Oioh),Lcinetobacter species (8.l4yo), Pseudomonas species (7.l2Yo), and others. The thirdgeneration Cephalosporins Hke Ceftriaxone, Ceftazidime and Cefotaxime were sensitive against 45-66yo isolated Enterobacteriaceae. The first- and second-generation Cephalosporins were less effective. The sensitivity to Ciprofloxacin of various Enterobacteriaceae was only between 33-4Oo compared to 52.8-67.9Vo against Gentamicin. Majority of the Enterobacteriaceae were resistant to Ampicillin, whereas almost all of the Enterobacteriaceae (94-100%o) were sensitive to Imipenem. Ahont97.UY;s Acinetobacter species were susceptible to Imipenem. Sensitivity of the organism (Acinetobacter) to third-generation Cephalosporins ranged between 50-560 , whereas 40.60/o were found sensitive to Ciprofloxacin. The sensitivity to Chloramphenicol, Co-trimoxazole, Cephalexin and Ampicillin ranged between 9.3oh to 34.30 . About 93.0%o of Pseudomonas species were sensitive to Imipenem. The rate of susceptibility to Gentamicin and Netilmicin was higher than those of the Ciprofloxacin and Ceftriaxone (67.80/o and, 53.57o vs, 39.2yo), About 707o of isolated S. aureus were resistant to OxacilHn but all were sensitive to Vancomycin. The result of this study would help the physicians to make a judicious choice of,.anti.biotics for therapeutic purposes.Bangladesh J Med Microbiol 2008; O2 (02):7-ll

scholarly journals Studies on decolorization of textile dye by using Pseudomonas and bacillus sp from the contaminated effluent soil samples of Kovilpatti, Thoothukudi district of Tamil Nadu

2019 ◽  
Vol 11 (1) ◽  
pp. 134-137 ◽  
Author(s):  
Kannan D ◽  
Renuga Devi ◽  
A. G. Murugesan ◽  
S. Rajan
Keyword(s):  
Contaminated Soil ◽  
Tamil Nadu ◽  
Soil Samples ◽  
Toxic Chemicals ◽  
Textile Dye ◽  
Pseudomonas Sp ◽  
Bacillus Sp ◽  
Bacterial Strains ◽  
Textile Industries ◽  
Source Of Pollution

Textile industries releasing large amount of effluent which contains textile dyes and toxic chemicals and it is one of the major source of pollution also contaminating water bodies. To remove that, bacteria have been of great attention because of their ability to treat effluent. The present study was undertaken to exploit the ability of Pseudomonassp and Bacillus sp from dye contaminated soil samples for bioremediation for dye effluent. Among the bacterial strains used in the study. Pseudomonas sp emerged out to be most potent decolorizer in comparison to Bacillus sp with the degree of decolorization of 90.0 %. Thus, it was concluded that the Pseudomonas sp had highest color removing capacity from contaminated effluent soil samples. 

scholarly journals The htx and ptx Operons of Pseudomonas stutzeri WM88 Are New Members of the Pho Regulon

2004 ◽  
Vol 186 (17) ◽  
pp. 5876-5882 ◽  
Author(s):  
Andrea K. White ◽  
William W. Metcalf
Keyword(s):  
Reporter Gene ◽  
Pseudomonas Stutzeri ◽  
Deletion Mutants ◽  
Pho Regulon ◽  
Gene Fusions ◽  
New Members ◽  
Starvation Conditions ◽  
P Sources

ABSTRACT The htx and ptx operons of Pseudomonas stutzeri WM88 allow for the use of the inorganic reduced phosphorus (P) compounds hypophosphite (P valence, +1) and phosphite (P valence, +3) as sole P sources. To support the proposed in vivo role for the htx and ptx operons, namely the use of phosphite and hypophosphite as alternative P sources, we used reporter gene fusions to examine their expression levels with respect to various P conditions. Expression of the htx and ptx operons was induced up to 17- and 22-fold, respectively, in cultures grown under phosphate starvation conditions relative to expression in medium with excess phosphate (Pi). However, the presence of the reduced P substrate hypophosphite, phosphite, or methylphosphonate, in addition to excess Pi, did not result in an increase in the expression of either operon. To provide further support for a role of the htx and ptx operons in Pi acquisition, we identified P. stutzeri phoBR homologs and constructed deletion mutants. Induction of the htx and ptx reporter gene fusions in response to growth on limiting Pi was abolished in ΔphoB, ΔphoR, and ΔphoBR mutants, demonstrating that htx and ptx expression is phoBR dependent. The putative LysR-type regulator encoded by ptxE has no apparent role in the expression of the htx and ptx operons, as no effect was observed on the level of induction of either operon in a ΔptxE mutant.

scholarly journals Potential risks of antibiotic resistant bacteria and genes in bioremediation of petroleum hydrocarbon contaminated soils

2020 ◽  
Vol 22 (5) ◽  
pp. 1110-1124 ◽  
Author(s):  
Colin J. Cunningham ◽  
Maria S. Kuyukina ◽  
Irena B. Ivshina ◽  
Alexandr I. Konev ◽  
Tatyana A. Peshkur ◽  
...  
Keyword(s):  
Antibiotic Resistance ◽  
Contaminated Soil ◽  
Contaminated Soils ◽  
Petroleum Hydrocarbon ◽  
Resistant Bacteria ◽  
Careful Selection ◽  
Bacterial Strains ◽  
Antibiotic Resistant ◽  
Potential Risks ◽  
Selection Of

The problems associated with potential risks of antibiotic resistance spreading during bioremediation of oil-contaminated soil are discussed. Careful selection of bacterial strains and pretreatment of organic wastes used as fertilizers are suggested.

scholarly journals Interactions between coral propagules in aquarium and field conditions

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Poh Leong Loo ◽  
Anqi Li ◽  
Koh Siang Tan
Keyword(s):  
Scleractinian Coral ◽  
Interspecific Interactions ◽  
Optimal Growth ◽  
Interspecific Interaction ◽  
Ex Situ ◽  
Tissue Loss ◽  
Intraspecific Interaction ◽  
Growth And Survival ◽  
In Situ Conditions

AbstractThe effects of intraspecific and interspecific interactions between three species of scleractinian coral micro-colonies, namely Lithophyllon undulatum, Turbinaria mesenterina and Platygyra sinensis were evaluated for their survivorship, tissue loss and growth in both field (in-situ) and aquarium (ex-situ) conditions over 12 weeks. Regardless of environmental conditions and interactions, L. undulatum survived better (91.7 ± 6.2%) than T. mesenterina (75.0 ± 25.0%) and P. sinensis (60.4 ± 39.5%). Similarly, L. undulatum registered the lowest tissue loss (0.5 ± 0.7%) as compared to T. mesenterina (14.3 ± 19.4%) and P. sinensis (22.0 ± 30.0%). However, P. sinensis gained more weight (3.2 ± 5.2 g) than either T. mesenterina (2.7 ± 2.4 g) or L. undulatum (0.8 ± 1.1 g). In both environments, all three species in intraspecific interaction generally had higher survivorship, lower tissue loss and better growth than those in interspecific interaction except the latter in in-situ conditions had a twofold increase in growth (5.8 ± 3.7 g) than the former in-situ conditions (2.8 ± 3.7 g). Hence, all three species are potentially suitable for transplantation and mariculture except perhaps for P. sinensis which performed poorly in ex-situ conditions. Corals can be transplanted either with different colonies of the same species or together with other coral taxa. This study demonstrated that L. undulatum should be transplanted between T. mesenterina and P. sinensis for optimal growth and survival.

Hydrocarbon biodegradation in oxygen-limited sequential batch reactors by consortium from weathered, oil-contaminated soil

2005 ◽  
Vol 51 (3) ◽  
pp. 231-239 ◽  
Author(s):  
S A Medina-Moreno ◽  
S Huerta-Ochoa ◽  
M Gutiérrez-Rojas
Keyword(s):  
Contaminated Soil ◽  
Batch Reactor ◽  
Oxygen Limitation ◽  
Total Petroleum Hydrocarbons ◽  
Hydrocarbon Biodegradation ◽  
Batch Reactors ◽  
Native Plant ◽  
Low Oxygen ◽  
Bacterial Strains ◽  
Transfer Coefficients

We studied the use of sequential batch reactors under oxygen limitation to improve and maintain consortium ability to biodegrade hydrocarbons. Air-agitated tubular reactors (2.5 L) were operated for 20 sequential 21-day cycles. Maya crude oil – paraffin mixture (13 000 mg/L) was used as the sole carbon source. The reactors were inoculated with a consortium from the rhizosphere of Cyperus laxus, a native plant that grows naturally in weathered, contaminated soil. Oxygen limitation was induced in the tubular reactor by maintaining low oxygen transfer coefficients (kLa < 20.6 h–1). The extent and biodegradation rates increased significantly up to the fourth cycle, maintaining values of about 66.33% and 460 mg·L–1·d–1, respectively. Thereafter, sequential batch reactor operation exhibited a pattern with a constant general trend of biodegradation. The effect of oxygen limitation on consortium activity led to a low biomass yield and non-soluble metabolite (0.45 g SS/g hydrocarbons consumed). The average number of hydrocarbon-degrading microorganisms increased from 6.5 × 107 (cycles 1–3) to 2.2 × 108 (cycles 4–20). Five bacterial strains were identified: Achromobacter (Alcaligenes) xylosoxidans, Bacillus cereus, Bacillus subtilis, Brevibacterium luteum, and Pseudomonas pseudoalcaligenes. Asphaltene-free total petroleum hydrocarbons, extracted from a weathered, contaminated soil, were also biodegraded (97.1 mg·L–1·d–1) and mineralized (210.48 mg CO2·L–1·d–1) by the enriched consortium without inhibition. Our results indicate that sequential batch reactors under oxygen limitation can be used to produce consortia with high and constant biodegradation ability for industrial applications of bioremediation.Key words: sequential batch reactors, oxygen limitation, consortium, hydrocarbon biodegradation.

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