scholarly journals The Na2−nHn[Zr(Si2O7)]∙mH2O Minerals and Related Compounds (n = 0–0.5; m = 0.1): Structure Refinement, Framework Topology, and Possible Na+-Ion Migration Paths

Crystals ◽  
2020 ◽  
Vol 10 (11) ◽  
pp. 1016
Author(s):  
Natalya A. Kabanova ◽  
Taras L. Panikorovskii ◽  
Vladimir V. Shilovskikh ◽  
Natalya S. Vlasenko ◽  
Victor N. Yakovenchuk ◽  
...  
Keyword(s):  
Microprobe Analysis ◽  
Structure Refinement ◽  
Topological Analysis ◽  
Structural Complexity ◽  
X Ray Diffraction ◽  
Ion Migration ◽  
X Ray ◽  
Substitution Mechanism ◽  
The Family ◽  
Related Compounds

The Na2−nHn[Zr(Si2O7)]∙mH2O family of minerals and related compounds (n = 0–0.5; m = 0.1) consist of keldyshite, Na3H[Zr2(Si2O7)2], and parakeldyshite, Na2[Zr(Si2O7)], and synthetic Na2[Zr(Si2O7)]∙H2O. The crystal structures of these materials are based upon microporous heteropolyhedral frameworks formed by linkage of Si2O7 groups and ZrO6 octahedra with internal channels occupied by Na+ cations and H2O molecules. The members of the family have been studied by the combination of theoretical (geometrical–topological analysis, Voronoi migration map calculation, structural complexity calculation), and empirical methods (single-crystal X-ray diffraction, microprobe analysis, and Raman spectroscopy for parakeldyshite). It was found that keldyshite and parakeldyshite have the same fsh topology, while Na2ZrSi2O7∙H2O is different and has the xat topology. The microporous heteropolyhedral frameworks in these materials have a 2-D system of channels suitable for the Na+-ion migration. The crystal structure of keldyshite can be derived from that of parakeldyshite by the Na+ + O2− ↔ OH− + □ substitution mechanism, widespread in the postcrystallization processes in hyperagpaitic rocks.

scholarly journals Crystal Chemical Relations in the Shchurovskyite Family: Synthesis and Crystal Structures of K2Cu[Cu3O]2(PO4)4 and K2.35Cu0.825[Cu3O]2(PO4)4

Crystals ◽  
2021 ◽  
Vol 11 (7) ◽  
pp. 807
Author(s):  
Ilya V. Kornyakov ◽  
Sergey V. Krivovichev
Keyword(s):  
Crystal Structure ◽  
Crystal Structures ◽  
Structural Complexity ◽  
Crystal Chemical ◽  
X Ray Diffraction ◽  
Complexity Measures ◽  
X Ray ◽  
The Family ◽  
Similarities And Differences ◽  
Related Compounds

Single crystals of two novel shchurovskyite-related compounds, K2Cu[Cu3O]2(PO4)4 (1) and K2.35Cu0.825[Cu3O]2(PO4)4 (2), were synthesized by crystallization from gaseous phase and structurally characterized using single-crystal X-ray diffraction analysis. The crystal structures of both compounds are based upon similar Cu-based layers, formed by rods of the [O2Cu6] dimers of oxocentered (OCu4) tetrahedra. The topologies of the layers show both similarities and differences from the shchurovskyite-type layers. The layers are connected in different fashions via additional Cu atoms located in the interlayer, in contrast to shchurovskyite, where the layers are linked by Ca2+ cations. The structures of the shchurovskyite family are characterized using information-based structural complexity measures, which demonstrate that the crystal structure of 1 is the simplest one, whereas that of 2 is the most complex in the family.

Clino-suenoite, a newly approved magnesium-iron-manganese amphibole from Valmalenco, Sondrio, Italy

2018 ◽  
Vol 82 (1) ◽  
pp. 189-198
Author(s):  
Roberta Oberti ◽  
Massimo Boiocchi ◽  
Frank C. Hawthorne ◽  
Marco E. Ciriotti ◽  
Olav Revheim ◽  
...  
Keyword(s):  
Microprobe Analysis ◽  
Electron Microprobe Analysis ◽  
Structure Refinement ◽  
Type Specimen ◽  
Crystal Structure Refinement ◽  
X Ray Diffraction ◽  
Unit Cell Parameters ◽  
X Ray ◽  
Cell Parameters ◽  
Iron Manganese

ABSTRACTClino-suenoite, ideally □${\rm Mn}_{2}^{2 +} $Mg5Si8O22(OH)2 is a new amphibole of the magnesium-iron-manganese subgroup of the amphibole supergroup. The type specimen was found at the Lower Scerscen Glacier, Valmalenco, Sondrio, Italy, where it occurs in Mn-rich quartzite erratics containing braunite, rhodonite, spessartine, carbonates and various accessory minerals. The empirical formula derived from electron microprobe analysis and single-crystal structure refinement is: ANa0.04B(${\rm Mn}_{1.58}^{2 +} $Ca0.26Na0.16)Σ2.00C(Mg4.21${\rm Mn}_{0. 61}^{2 +} {\rm Fe}_{0.04}^{2 +} $Zn0.01Ni0.01${\rm Fe}_{0.08}^{3 +} $Al0.04)Σ5.00TSi8.00O22W[(OH1.94F0.06)]Σ=2.00. Clino-suenoite is biaxial (+), with α = 1.632(2), β = 1.644(2), γ = 1.664(2) and 2Vmeas. = 78(2)° and 2Vcalc. = 76.3°. The unit-cell parameters in the C2/m space group are a = 9.6128(11), b = 18.073(2), c = 5.3073(6) Å, β = 102.825(2)° and V = 899.1(2) Å3 with Z = 2. The strongest ten reflections in the powder X-ray diffraction pattern [d (in Å), I, (hkl)] are: 2.728, 100, (151); 2.513, 77, ($\bar 2$02); 3.079, 62, (310); 8.321, 60, (110); 3.421, 54, (131); 2.603, 42, (061); 2.175, 42, (261); 3.253, 41, (240); 2.969, 40, (221); 9.036, 40, (020).

Site occupancy in richterite-winchite from Libby, Montana, USA, by FTIR spectroscopy

2007 ◽  
Vol 71 (1) ◽  
pp. 93-104 ◽  
Author(s):  
G. Iezzi ◽  
G. Della Ventura ◽  
F. Bellatreccia ◽  
S. Lo Mastro ◽  
B. R. Bandli ◽  
...  
Keyword(s):  
Microprobe Analysis ◽  
Structure Refinement ◽  
Site Occupancy ◽  
Rietveld Analysis ◽  
Published Data ◽  
X Ray Diffraction ◽  
Cation Site ◽  
X Ray ◽  
Powder Samples ◽  
Frequency Components

AbstractThree natural amphibole samples collected from the former vermiculite mine near Libby, Montana. USA, have been analysed by Rietveld X-ray powder diffraction (XRPD) refinement and Fourier transform infrared spectroscopy (FTIR) in the OH-stretching region. The same materials have been analysed previously by electron microprobe analysis (EMPA), Mössbauer spectroscopy and structure refinement (SREF) single crystal X-ray diffraction (SC-XRD), which revealed that these amphiboles have a crystal chemical formula very close to an intermediate composition between winchite and richterite, i.e. AA0.5BNaCaCMg4.5M3+T0.5Si8O22(OH)2 (A = Na and/or K; M3+ = Fe3+ and/or Al). The Rietveld analysis showed the powder samples used for the experiments here to be composed only of amphibole. This in turn allowed us to use FTIR OH-stretching data to derive cation ordering on these powder samples. The three FTIR spectra are quite similar and up to four components can be fitted to the patterns. The two lower-frequency components (labelled A and B) can be attributed to a local O(3)-H dipole surrounded by M(1)M(3)Mg3 and M(1)M(3)Mg2Fe2+; (respectively), an empty A site and rSi8 environments; on the contrary, the higher-frequency C and D bands indicate the presence of an occupied A site. The FTIR OH-stretching data alone allow us to calculate the site occupancy of the A, M(1)–M(3) and T sites with confidence, as compared with previously published data. By contrast M(4)- and M(2)-site occupancies are more difficult to evaluate. This study takes advantage of the large database of well characterized synthetic amphiboles, built over the last two decades. The comparison of vibrational spectroscopy data with micro-chemical and crystallographic data reported in this study demonstrate that the FTIR OH-stretching method alone is a valuable and rapid method to derive or at least sensibly constrain site occupancy for natural amphiboles. A much more detailed cation site occupancy can be obtained by combining micro-chemical and FTIR OH-stretching data.

scholarly journals Structure Refinement and Thermal Stability Studies of the Uranyl Carbonate Mineral Andersonite, Na2Ca[(UO2)(CO3)3]·(5+x)H2O

Minerals ◽  
2018 ◽  
Vol 8 (12) ◽  
pp. 586
Author(s):  
Vladislav V. Gurzhiy ◽  
Maria G. Krzhizhanovskaya ◽  
Alina R. Izatulina ◽  
Ginger E. Sigmon ◽  
Sergey V. Krivovichev ◽  
...  
Keyword(s):  
Thermal Expansion ◽  
Structure Refinement ◽  
Structural Complexity ◽  
Carbonate Mineral ◽  
X Ray Diffraction ◽  
X Ray ◽  
Thermal Expansion Coefficients ◽  
Uranyl Carbonate ◽  
Expansion Coefficients ◽  
Disordered Atoms

A sample of uranyl carbonate mineral andersonite, Na2Ca[(UO2)(CO3)3]·5−6H2O, originating from the Cane Springs Canyon, San Juan Co., UT, USA was studied using single-crystal and powder X-ray diffraction at various temperatures. Andersonite is trigonal, R−3m, a = 17.8448(4), c = 23.6688(6) Å, V = 6527.3(3) Å3, Z = 18, R1 = 0.018. Low-temperature SCXRD determined the positions of H atoms and disordered H2O molecules, arranged within the zeolite-like channels. The results of high-temperature PXRD experiments revealed that the structure of andersonite is stable up to 100 °C; afterwards, it loses crystallinity due to release of H2O molecules. Taking into account the well-defined presence of H2O molecules forming channels’ walls that to the total of five molecules p.f.u., we suggest that the formula of andersonite is Na2Ca[(UO2)(CO3)3]·(5+x)H2O, where x ≤ 1. The thermal behavior of andersonite is essentially anisotropic with the lowest values of the main thermal expansion coefficients in the direction perpendicular to the channels (plane (001)), while the maximal expansion is observed along the c axis—in the direction of channels. The thermal expansion around 80 °C within the (001) plane becomes negative due to the total release of “zeolitic” H2O molecules. The information-based structural complexity parameters of andersonite were calculated after the removal of all the disordered atoms, leaving only the predominantly occupied sites, and show that the crystal structure of the mineral should be described as complex, possessing 4.535 bits/atom and 961.477 bits/cell, which is comparative to the values for another very common natural uranyl carbonate, liebigite.

Katophorite from the Jade Mine Tract, Myanmar: mineral description of a rare (grandfathered) endmember of the amphibole supergroup

2015 ◽  
Vol 79 (2) ◽  
pp. 355-363 ◽  
Author(s):  
Roberta Oberti ◽  
Massimo Boiocchi ◽  
Frank C. Hawthorne ◽  
Neil A. Ball ◽  
George E. Harlow
Keyword(s):  
Microprobe Analysis ◽  
Structure Refinement ◽  
Polarized Light ◽  
Monoclinic Space Group ◽  
X Ray Diffraction ◽  
Calculated Density ◽  
X Ray ◽  
International Mineralogical Association ◽  
Compositional Field ◽  
The Ideal

AbstractKatophorite has the ideal formula ANaB(NaCa)C(Mg4Al)T(Si7Al)O22W(OH)2 (Hawthorne et al., 2012). No published analyses of amphiboles fall in the katophorite compositional field, except that of Harlow and Olds (1987) for an amphibole from near Hpakan in the Jade Mine Tract, Myanmar. This amphibole was approved by the International Mineralogical Association Commission on New Minerals, Nomenclature and Classification (vote 2013-140) as katophorite, and is reported here. Holotype katophorite is monoclinic, space group C2/m, a = 9.8573(8), b = 17.9617(15), c = 5.2833(4) Å, β = 104.707(2)°, V = 904.78(13) Å3, Z = 2. The calculated density is 3.091 g cm–3. In plane-polarized light, katophorite is pleochroic, X = pale blue (medium), Y = light blue-green (strongest), Z = colourless; X ∧ a = 30.6° (β obtuse), Y || b, Z ∧ c = 15.8 (β acute). It is biaxial negative, α = 1.638, β = 1.642, γ = 1.644, all ± 0.002; 2Vobs = 73(1)°, 2Vcalc = 70°. The eight strongest lines in the powder X-ray diffraction pattern are [d in Å (I)(hkl)]: 2.700 (100)(151), 3.129 (69)(310), 2.536 (65)(202), 3.378 (61)(131), 8.421 (55)(110), 2.583 (46)(061), 2.942 (43)(221) and 2.334 (41)(351). Electron-microprobe analysis of the refined crystal gave SiO251.74, Al2O37.38, TiO2 0.14, FeO 1.55, Fe2O3 2.82, MgO 18.09, CaO 8.17, Na2O 6.02, K2O 0.24, F 0.06, H2Ocalc. 1.80, Li2Ocalc. 0.09, sum 100.55 wt.% (Li2O and H2O based on the results of single-crystal structure refinement). The formula unit, calculated on the basis of 24 (O,OH,F) with (OH + F + O) = 2 is: A(Na0.85K0.04)Σ=0.89B(Ca1.22Na0.78)Σ=2.00C(Mg3.76Al0.43Fe0.303+Cr0.273+Fe0.182+Li0.05Ti0.014+)Σ=5.00T(Si7.21Al0.79)Σ=8.00O22W[(OH)1.67O0.30F0.03)]Σ=2.00.

Structure refinement of (Al, Zn)49Mg32-type phases by single-crystal X-ray diffraction

2000 ◽  
Vol 294-296 ◽  
pp. 327-330 ◽  
Author(s):  
W. Sun ◽  
F.J. Lincoln ◽  
K. Sugiyama ◽  
K. Hiraga
Keyword(s):  
Single Crystal ◽  
Structure Refinement ◽  
X Ray Diffraction ◽  
X Ray

Studies Directed Towards the Total Synthesis of Anticapsin and Related Compounds. IV. Competitive Reaction of Amino and Carboxy Substituents in the Halohydrination of 2-Aminobicyclo[2.2.2]oct-5-ene-2-carboxylic Acid Derivatives

1994 ◽  
Vol 47 (12) ◽  
pp. 2221 ◽  
Author(s):  
MJ Crossley ◽  
SR Davies ◽  
TW Hambley
Keyword(s):  
Total Synthesis ◽  
The Other ◽  
X Ray Diffraction ◽  
Amino Groups ◽  
Competitive Reaction ◽  
Trimethylsilyl Group ◽  
X Ray ◽  
Tricyclic Compounds ◽  
Tricyclic Compound ◽  
Related Compounds

Bromohydrination of benzyl (1RS,2SR,4SR)-2-benzyloxycarbonylamino-1-trimethylsilyloxy-bicyclo[2.2.2]oct-5-ene-2-carboxylate (6a) and the (1RS,2RS,4SR)- diastereomer (6b) with N- bromoacetamide in aqueous dioxan has been investigated. These reactions are highly regio-and stereo-selective and give the corresponding bromohydrins (9a) and (9b), but in moderate to low yield. These bromohydrins have the necessary stereochemistry for conversion into anticapsin. The other products from the reaction are tricyclic compounds formed by capture of the anti- bromonium cation intermediates or resultant bromohydrins by interaction with the proximal protected carboxy and amino groups within the molecules. Thus the carbolactone (11) is formed from the endo -adduct (6a), and the carbonimidic acid derivative (12) and the cyclic urethane (13) are formed from the exo-adduct (6b). Cleavage of the trimethylsilyl group from the tricyclic compound (12) gives benzyl (1RS,2RS,3RS,7RS,8RS)-5-benzyloxy-2-bromo-8-hydroxy-4-oxa-6-azatricyclo[5.3.1.03,8]undec-5-ene-7-carboxylate(14), the structure of which was determined by X-ray diffraction methods and refined to a residual of 0.035 for 1549 independent observed reflections. The crystals of (14) are monoclinic, P21/c, a 12.954(3), b 6.197(3), c 26.784(7) Ǻ, β 95.33(2)°, Z 4. Reactions attempting to generate iodohydrins from the alkenes (6) were also highly regioselective and gave detrimethylsilylated iodo analogues of (11) and (13).

Rare-earth crystal chemistry of thalénite-(Y) from different environments

2018 ◽  
Vol 82 (2) ◽  
pp. 313-327
Author(s):  
Markus B. Raschke ◽  
Evan J. D. Anderson ◽  
Jason Van Fosson ◽  
Julien M. Allaz ◽  
Joseph R. Smyth ◽  
...  
Keyword(s):  
Rare Earth ◽  
Rare Earth Element ◽  
Earth Element ◽  
Spatial Scales ◽  
Structure Refinement ◽  
X Ray Diffraction ◽  
Heavy Rare Earth ◽  
Heavy Rare Earth Element ◽  
X Ray ◽  
Golden Horn

ABSTRACTThalénite-(Y), ideally Y3Si3O10F, is a heavy-rare-earth-rich silicate phase occurring in granite pegmatites that may help to illustrate rare-earth element (REE) chemistry and behaviour in natural systems. The crystal structure and mineral chemistry of thalénite-(Y) were analysed by electron microprobe analysis, X-ray diffraction and micro-Raman spectroscopy from a new locality in the peralkaline granite of the Golden Horn batholith, Okanogan County, Washington State, USA, in comparison with new analyses from the White Cloud pegmatite in the Pikes Peak batholith, Colorado, USA. The Golden Horn thalénite-(Y) occurs as late-stage sub-millimetre euhedral bladed transparent crystals in small miarolitic cavities in an arfvedsonite-bearing biotite granite. It exhibits growth zoning with distinct heavy-rare-earth element (HREE) vs. light-rare-earth element (LREE) enriched zones. The White Cloud thalénite-(Y) occurs in two distinct anhedral and botryoidal crystal habits of mostly homogenous composition. In addition, minor secondary thalénite-(Y) is recognized by its distinct Yb-rich composition (up to 0.8 atoms per formula unit (apfu) Yb). Single-crystal X-ray diffraction analysis and structure refinement reveals Y-site ordering with preferential HREE occupation of Y2 vs. Y1 and Y3 REE sites. Chondrite normalization shows continuous enrichment of HREE in White Cloud thalénite-(Y), in contrast to Golden Horn thalénite-(Y) with a slight depletion of the heaviest REE (Tm, Yb and Lu). The results suggest a hydrothermal origin of the Golden Horn miarolitic thalénite-(Y), compared to a combination of both primary magmatic followed by hydrothermal processes responsible for the multiple generations over a range of spatial scales in White Cloud thalénite-(Y).

scholarly journals Topology of the Electron Density and of Its Laplacian from Periodic LCAO Calculations on f-Electron Materials: The Case of Cesium Uranyl Chloride

Molecules ◽  
2021 ◽  
Vol 26 (14) ◽  
pp. 4227
Author(s):  
Alessandro Cossard ◽  
Silvia Casassa ◽  
Carlo Gatti ◽  
Jacques K. Desmarais ◽  
Alessandro Erba
Keyword(s):  
Electron Density ◽  
Chemical Bonding ◽  
Topological Analysis ◽  
Theoretical Description ◽  
Basis Functions ◽  
Quantum Mechanical ◽  
X Ray Diffraction ◽  
X Ray ◽  
Atomic Orbitals ◽  
Uranyl Chloride

The chemistry of f-electrons in lanthanide and actinide materials is yet to be fully rationalized. Quantum-mechanical simulations can provide useful complementary insight to that obtained from experiments. The quantum theory of atoms in molecules and crystals (QTAIMAC), through thorough topological analysis of the electron density (often complemented by that of its Laplacian) constitutes a general and robust theoretical framework to analyze chemical bonding features from a computed wave function. Here, we present the extension of the Topond module (previously limited to work in terms of s-, p- and d-type basis functions only) of the Crystal program to f- and g-type basis functions within the linear combination of atomic orbitals (LCAO) approach. This allows for an effective QTAIMAC analysis of chemical bonding of lanthanide and actinide materials. The new implemented algorithms are applied to the analysis of the spatial distribution of the electron density and its Laplacian of the cesium uranyl chloride, Cs2UO2Cl4, crystal. Discrepancies between the present theoretical description of chemical bonding and that obtained from a previously reconstructed electron density by experimental X-ray diffraction are illustrated and discussed.

A (4,4)-connected zinc(II) coordination polymer constructed with the flexible 2-carboxy phenoxyacetate ligand: synthesis, conformation alteration and fluorescent properties

2021 ◽  
Vol 0 (0) ◽  
Author(s):  
Jun-Xia Li ◽  
Tian Zhang ◽  
He-Jun Chen ◽  
Zhong-Xiang Du
Keyword(s):  
Coordination Polymer ◽  
Hydrothermal Reaction ◽  
Layer Structure ◽  
Fluorescence Emission ◽  
Phenoxyacetic Acid ◽  
X Ray Diffraction ◽  
Fluorescent Properties ◽  
Sulfate Heptahydrate ◽  
X Ray ◽  
Related Compounds

Abstract A new binary ZnII coordination polymer, [Zn(2-cpa)(H2O)] n (2D-Zn) has been prepared by a 120 °C hydrothermal reaction of zinc(II) sulfate heptahydrate and 2-carboxy phenoxyacetic acid (2-H2cpa) in the presence of potassium hydroxide. Single-crystal X-ray diffraction analysis shows that the ZnII ion is located in a deformed ZnO6 octahedron bonded by one water and three 2-carboxy phenoxyacetate (2-cpa) ligands. The 2-cpa exhibits pentadentate double bridging chelate-μ 3 coordination mode and connects adjacent ZnII ions to generate a corrugated (4,4)-connected layer structure. The structures, conformation of 2-cpa and photoluminescence spectra for 2D-Zn have been carefully analyzed and compared with its two closely related compounds ̶ 1D [Zn(2-cpa)(H2O)] n (1D-Zn) and mononuclear [Zn(2-cpa)(H2O)3] (0D-Zn). The results showed that the conformation of 2-cpa in 2D-Zn has the maximum alteration and the corresponding fluorescence emission peak of 2D-Zn has the largest red-shift of 62 nm compared with that of free 2-H2cpa.

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