scholarly journals The Automatic Detection of Dataset Names in Scientific Articles

Data ◽  
2021 ◽  
Vol 6 (8) ◽  
pp. 84
Author(s):  
Jenny Heddes ◽  
Pim Meerdink ◽  
Miguel Pieters ◽  
Maarten Marx
Keyword(s):  
Open Access ◽  
Gold Standard ◽  
State Of The Art ◽  
Named Entity Recognition ◽  
Entity Recognition ◽  
Rule Based ◽  
Named Entity ◽  
Gold Standard Dataset ◽  
The Many ◽  
Better Than

We study the task of recognizing named datasets in scientific articles as a Named Entity Recognition (NER) problem. Noticing that available annotated datasets were not adequate for our goals, we annotated 6000 sentences extracted from four major AI conferences, with roughly half of them containing one or more named datasets. A distinguishing feature of this set is the many sentences using enumerations, conjunctions and ellipses, resulting in long BI+ tag sequences. On all measures, the SciBERT NER tagger performed best and most robustly. Our baseline rule based tagger performed remarkably well and better than several state-of-the-art methods. The gold standard dataset, with links and offsets from each sentence to the (open access available) articles together with the annotation guidelines and all code used in the experiments, is available on GitHub.

Towards corpus and model: Hierarchical structured-attention-based features for Indonesian named entity recognition

2021 ◽  
pp. 1-12
Author(s):  
Yingwen Fu ◽  
Nankai Lin ◽  
Xiaotian Lin ◽  
Shengyi Jiang
Keyword(s):  
Language Processing ◽  
State Of The Art ◽  
Named Entity Recognition ◽  
Entity Recognition ◽  
Language Models ◽  
Neural Models ◽  
Performance Models ◽  
Named Entity ◽  
High Resource ◽  
Benchmark Datasets

Named entity recognition (NER) is fundamental to natural language processing (NLP). Most state-of-the-art researches on NER are based on pre-trained language models (PLMs) or classic neural models. However, these researches are mainly oriented to high-resource languages such as English. While for Indonesian, related resources (both in dataset and technology) are not yet well-developed. Besides, affix is an important word composition for Indonesian language, indicating the essentiality of character and token features for token-wise Indonesian NLP tasks. However, features extracted by currently top-performance models are insufficient. Aiming at Indonesian NER task, in this paper, we build an Indonesian NER dataset (IDNER) comprising over 50 thousand sentences (over 670 thousand tokens) to alleviate the shortage of labeled resources in Indonesian. Furthermore, we construct a hierarchical structured-attention-based model (HSA) for Indonesian NER to extract sequence features from different perspectives. Specifically, we use an enhanced convolutional structure as well as an enhanced attention structure to extract deeper features from characters and tokens. Experimental results show that HSA establishes competitive performance on IDNER and three benchmark datasets.

Named Entity Recognition and Relation Extraction

2021 ◽  
Vol 54 (1) ◽  
pp. 1-39
Author(s):  
Zara Nasar ◽  
Syed Waqar Jaffry ◽  
Muhammad Kamran Malik
Keyword(s):  
Deep Learning ◽  
State Of The Art ◽  
Named Entity Recognition ◽  
Relation Extraction ◽  
The State ◽  
Entity Recognition ◽  
Joint Models ◽  
Named Entity ◽  
Textual Data ◽  
Benchmark Datasets

With the advent of Web 2.0, there exist many online platforms that result in massive textual-data production. With ever-increasing textual data at hand, it is of immense importance to extract information nuggets from this data. One approach towards effective harnessing of this unstructured textual data could be its transformation into structured text. Hence, this study aims to present an overview of approaches that can be applied to extract key insights from textual data in a structured way. For this, Named Entity Recognition and Relation Extraction are being majorly addressed in this review study. The former deals with identification of named entities, and the latter deals with problem of extracting relation between set of entities. This study covers early approaches as well as the developments made up till now using machine learning models. Survey findings conclude that deep-learning-based hybrid and joint models are currently governing the state-of-the-art. It is also observed that annotated benchmark datasets for various textual-data generators such as Twitter and other social forums are not available. This scarcity of dataset has resulted into relatively less progress in these domains. Additionally, the majority of the state-of-the-art techniques are offline and computationally expensive. Last, with increasing focus on deep-learning frameworks, there is need to understand and explain the under-going processes in deep architectures.

scholarly journals Robust Multilingual Named Entity Recognition with Shallow Semi-supervised Features (Extended Abstract)

2017 ◽  
Author(s):  
Rodrigo Agerri ◽  
German Rigau
Keyword(s):  
Reproducibility Of Results ◽  
State Of The Art ◽  
Named Entity Recognition ◽  
Local Information ◽  
Entity Recognition ◽  
Shared Task ◽  
Competitive System ◽  
Named Entity ◽  
Text Understanding ◽  
Domain Models

We present a multilingual Named Entity Recognition approach based on a robust and general set of features across languages and datasets. Our system combines shallow local information with clustering semi-supervised features induced on large amounts of unlabeled text. Understanding via empiricalexperimentation how to effectively combine various types of clustering features allows us to seamlessly export our system to other datasets and languages. The result is a simple but highly competitive system which obtains state of the art results across five languages and twelve datasets. The results are reported on standard shared task evaluation data such as CoNLL for English, Spanish and Dutch. Furthermore, and despite the lack of linguistically motivated features, we also report best results for languages such as Basque and German. In addition, we demonstrate that our method also obtains very competitive results even when the amount of supervised data is cut by half, alleviating the dependency on manually annotated data. Finally, the results show that our emphasis on clustering features is crucial to develop robust out-of-domain models. The system and models are freely available to facilitate its use and guarantee the reproducibility of results.

scholarly journals BioALBERT: A Simple and Effective Pre-trained Language Model for Biomedical Named Entity Recognition

2020 ◽  
Author(s):  
Usman Naseem ◽  
Matloob Khushi ◽  
Vinay Reddy ◽  
Sakthivel Rajendran ◽  
Imran Razzak ◽  
...  
Keyword(s):  
State Of The Art ◽  
Language Model ◽  
Named Entity Recognition ◽  
Training Data ◽  
Entity Recognition ◽  
Future Research ◽  
Named Entity ◽  
Domain Specific ◽  
Context Dependent ◽  
Biomedical Named Entity Recognition

Abstract Background: In recent years, with the growing amount of biomedical documents, coupled with advancement in natural language processing algorithms, the research on biomedical named entity recognition (BioNER) has increased exponentially. However, BioNER research is challenging as NER in the biomedical domain are: (i) often restricted due to limited amount of training data, (ii) an entity can refer to multiple types and concepts depending on its context and, (iii) heavy reliance on acronyms that are sub-domain specific. Existing BioNER approaches often neglect these issues and directly adopt the state-of-the-art (SOTA) models trained in general corpora which often yields unsatisfactory results. Results: We propose biomedical ALBERT (A Lite Bidirectional Encoder Representations from Transformers for Biomedical Text Mining) - bioALBERT - an effective domain-specific pre-trained language model trained on huge biomedical corpus designed to capture biomedical context-dependent NER. We adopted self-supervised loss function used in ALBERT that targets on modelling inter-sentence coherence to better learn context-dependent representations and incorporated parameter reduction strategies to minimise memory usage and enhance the training time in BioNER. In our experiments, BioALBERT outperformed comparative SOTA BioNER models on eight biomedical NER benchmark datasets with four different entity types. The performance is increased for; (i) disease type corpora by 7.47% (NCBI-disease) and 10.63% (BC5CDR-disease); (ii) drug-chem type corpora by 4.61% (BC5CDR-Chem) and 3.89 (BC4CHEMD); (iii) gene-protein type corpora by 12.25% (BC2GM) and 6.42% (JNLPBA); and (iv) Species type corpora by 6.19% (LINNAEUS) and 23.71% (Species-800) is observed which leads to a state-of-the-art results. Conclusions: The performance of proposed model on four different biomedical entity types shows that our model is robust and generalizable in recognizing biomedical entities in text. We trained four different variants of BioALBERT models which are available for the research community to be used in future research.

scholarly journals ChemTok: A New Rule Based Tokenizer for Chemical Named Entity Recognition

2016 ◽  
Vol 2016 ◽  
pp. 1-9 ◽  
Author(s):  
Abbas Akkasi ◽  
Ekrem Varoğlu ◽  
Nazife Dimililer
Keyword(s):  
Conditional Random Fields ◽  
Named Entity Recognition ◽  
Classification Performance ◽  
Entity Recognition ◽  
Support Vector ◽  
Learning Approaches ◽  
Data Set ◽  
Rule Based ◽  
Named Entity ◽  
Vector Machines

Named Entity Recognition (NER) from text constitutes the first step in many text mining applications. The most important preliminary step for NER systems using machine learning approaches is tokenization where raw text is segmented into tokens. This study proposes an enhanced rule based tokenizer, ChemTok, which utilizes rules extracted mainly from the train data set. The main novelty of ChemTok is the use of the extracted rules in order to merge the tokens split in the previous steps, thus producing longer and more discriminative tokens. ChemTok is compared to the tokenization methods utilized by ChemSpot and tmChem. Support Vector Machines and Conditional Random Fields are employed as the learning algorithms. The experimental results show that the classifiers trained on the output of ChemTok outperforms all classifiers trained on the output of the other two tokenizers in terms of classification performance, and the number of incorrectly segmented entities.

scholarly journals Recursively Binary Modification Model for Nested Named Entity Recognition

2020 ◽  
Vol 34 (05) ◽  
pp. 8164-8171
Author(s):  
Bing Li ◽  
Shifeng Liu ◽  
Yifang Sun ◽  
Wei Wang ◽  
Xiang Zhao
Keyword(s):  
Strong Evidence ◽  
State Of The Art ◽  
Named Entity Recognition ◽  
Bayesian Framework ◽  
Entity Recognition ◽  
Named Entities ◽  
Named Entity ◽  
Nested Structures ◽  
Benchmark Datasets ◽  
Head Component

Recently, there has been an increasing interest in identifying named entities with nested structures. Existing models only make independent typing decisions on the entire entity span while ignoring strong modification relations between sub-entity types. In this paper, we present a novel Recursively Binary Modification model for nested named entity recognition. Our model utilizes the modification relations among sub-entities types to infer the head component on top of a Bayesian framework and uses entity head as a strong evidence to determine the type of the entity span. The process is recursive, allowing lower-level entities to help better model those on the outer-level. To the best of our knowledge, our work is the first effort that uses modification relation in nested NER task. Extensive experiments on four benchmark datasets demonstrate that our model outperforms state-of-the-art models in nested NER tasks, and delivers competitive results with state-of-the-art models in flat NER task, without relying on any extra annotations or NLP tools.

scholarly journals Named Entity Recognition with Bidirectional LSTM-CNNs

2016 ◽  
Vol 4 ◽  
pp. 357-370 ◽  
Author(s):  
Jason P.C. Chiu ◽  
Eric Nichols
Keyword(s):  
Network Architecture ◽  
High Performance ◽  
State Of The Art ◽  
Named Entity Recognition ◽  
Entity Recognition ◽  
Feature Engineering ◽  
Named Entity ◽  
Extensive Evaluation ◽  
Bidirectional Lstm ◽  
Art Performance

Named entity recognition is a challenging task that has traditionally required large amounts of knowledge in the form of feature engineering and lexicons to achieve high performance. In this paper, we present a novel neural network architecture that automatically detects word- and character-level features using a hybrid bidirectional LSTM and CNN architecture, eliminating the need for most feature engineering. We also propose a novel method of encoding partial lexicon matches in neural networks and compare it to existing approaches. Extensive evaluation shows that, given only tokenized text and publicly available word embeddings, our system is competitive on the CoNLL-2003 dataset and surpasses the previously reported state of the art performance on the OntoNotes 5.0 dataset by 2.13 F1 points. By using two lexicons constructed from publicly-available sources, we establish new state of the art performance with an F1 score of 91.62 on CoNLL-2003 and 86.28 on OntoNotes, surpassing systems that employ heavy feature engineering, proprietary lexicons, and rich entity linking information.

scholarly journals Using machine learning to maintain rule-based named-entity recognition and classification systems

2001 ◽  
Author(s):  
Georgios Petasis ◽  
Frantz Vichot ◽  
Francis Wolinski ◽  
Georgios Paliouras ◽  
Vangelis Karkaletsis ◽  
...  
Keyword(s):  
Machine Learning ◽  
Named Entity Recognition ◽  
Classification Systems ◽  
Entity Recognition ◽  
Rule Based ◽  
Named Entity

Named entity recognition for Polish

2019 ◽  
Vol 55 (2) ◽  
pp. 239-269
Author(s):  
Michał Marcińczuk ◽  
Aleksander Wawer
Keyword(s):  
Open Source ◽  
State Of The Art ◽  
Proper Names ◽  
Named Entity Recognition ◽  
Entity Recognition ◽  
Coarse Grained ◽  
Named Entity ◽  
Current State ◽  
Annotated Corpora ◽  
Available Resources

Abstract In this article we discuss the current state-of-the-art for named entity recognition for Polish. We present publicly available resources and open-source tools for named entity recognition. The overview includes various kind of resources, i.e. guidelines, annotated corpora (NKJP, KPWr, CEN, PST) and lexicons (NELexiconS, PNET, Gazetteer). We present the major NER tools for Polish (Sprout, NERF, Liner2, Parallel LSTM-CRFs and PolDeepNer) and discuss their performance on the reference datasets. In the article we cover identification of named entity mentions in the running text, local and global entity categorization, fine- and coarse-grained categorization and lemmatization of proper names.

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