scholarly journals Anaerobic Dechlorination by a Humin-Dependent Pentachlorophenol-Dechlorinating Consortium under Autotrophic Conditions Induced by Homoacetogenesis

Author(s):  
Laskar ◽  
Awata ◽  
Kasai ◽  
Katayama

Anoxic aquifers suffer from energy limitations due to the unavailability of organic substrates, as dictated by hydrogen (H2) for various electron-accepting processes. This deficiency often results in the accumulation of persistent organic pollutants, where bioremediation using organic compounds often leads to secondary contamination. This study involves the reductive dechlorination of pentachlorophenol (PCP) by dechlorinators that do not use H2 directly, but rather through a reduced state of humin—a solid-phase humic substance—as the extracellular electron donor, which requires an organic donor such as formate, lactate, etc. This shortcoming was addressed by the development of an anaerobic mixed culture that was capable of reductively dechlorinating PCP using humin under autotrophic conditions induced by homoacetogenesis. Here, H2 was used for carbon-dioxide fixation to acetate; the acetate produced was used for the reduction of humin; and consequently used for dechlorination through reduced humin. The 16SrRNA gene sequencing analysis showed Dehalobacter and Dehalobacterium as the possible dechlorinators, while Clostridium and Oxobacter were identified as the homoacetogens. Thus, this work contributes to the development of an anaerobic consortium that balanced H2 dependency, where efficiency of humin reduction extends the applicability of anaerobic microbial remediation in aquifers through autotrophy, syntrophy, and reductive dechlorination.

Toxics ◽  
2022 ◽  
Vol 10 (1) ◽  
pp. 37
Author(s):  
Edoardo Dell’Armi ◽  
Marta Maria Rossi ◽  
Lucia Taverna ◽  
Marco Petrangeli Papini ◽  
Marco Zeppilli

Trichloroethylene (TCE) and more in general chlorinated aliphatic hydrocarbons (CAHs) can be removed from a contaminated matrix thanks to microorganisms able to perform the reductive dechlorination reaction (RD). Due to the lack of electron donors in the contaminated matrix, CAHs’ reductive dechlorination can be stimulated by fermentable organic substrates, which slowly release molecular hydrogen through their fermentation. In this paper, three different electron donors constituted by lactate, hydrogen, and a biocathode of a bioelectrochemical cell have been studied in TCE dechlorination batch experiments. The batch reactors evaluated in terms of reductive dechlorination rate and utilization efficiency of the electron donor reported that the bio-electrochemical system (BES) showed a lower RD rate with respect of lactate reactor (51 ± 9 µeq/d compared to 98 ± 4 µeq/d), while the direct utilization of molecular hydrogen gave a significantly lower RD rate (19 ± 8 µeq/d), due to hydrogen low solubility in liquid media. The study also gives a comparative evaluation of the different electron donors showing the capability of the bioelectrochemical system to reach comparable efficiencies with a fermentable substrate without the use of other chemicals, 10.7 ± 3.3% for BES with respect of 3.5 ± 0.2% for the lactate-fed batch reactor. This study shows the BES capability of being an alternative at classic remediation approaches.


2001 ◽  
Vol 67 (3) ◽  
pp. 1396-1399 ◽  
Author(s):  
Paul G. Egland ◽  
Jane Gibson ◽  
Caroline S. Harwood

ABSTRACT We isolated a strain of Rhodopseudomonas palustris(RCB100) by selective enrichment in light on 3-chlorobenzoate to investigate the steps that it uses to accomplish anaerobic dechlorination. Analyses of metabolite pools as well as enzyme assays suggest that R. palustris grows on 3-chlorobenzoate by (i) converting it to 3-chlorobenzoyl coenzyme A (3-chlorobenzoyl–CoA), (ii) reductively dehalogenating 3-chlorobenzoyl–CoA to benzoyl-CoA, and (iii) degrading benzoyl-CoA to acetyl-CoA and carbon dioxide.R. palustris uses 3-chlorobenzoate only as a carbon source and thus incorporates the acetyl-CoA that is produced into cell material. The reductive dechlorination route used by R. palustris for 3-chlorobenzoate degradation differs from those previously described in that a CoA thioester, rather than an unmodified aromatic acid, is the substrate for complete dehalogenation.


ChemInform ◽  
2006 ◽  
Vol 37 (41) ◽  
Author(s):  
M. K. Chaudhuri ◽  
S. K. Dehury ◽  
S. Hussain ◽  
A. Duarah ◽  
N. Gogoi

2018 ◽  
Vol 12 (1) ◽  
pp. 14-24
Author(s):  
Taghreed Khudhur Mohammad

The analysis of 16S rRNA gene sequences has been the technique generally used to study and confirm the identification and taxonomy of staphylococci. However, bacterial species cannot always be distinguished from each other using cultural methods. Thus,   clinical samples were collected from 190 cases only 31 positive for staphylococcal infections with Urinary Tract Infection, Wounds, Burns, Otitis media, diarrhea infections, were applied for microbiological analysis which include: cultures on Manitol salt agar and  HiCrome UTI Agar medium all the isolates gave positive golden yellow and identify as Staphylococcus spp. DNA was extracted from Staphylococcus spp and the 16srRNA gene were amplified by using specific primer, then sequencing of nucleic acid of genes was performed by machine is AB13730XL, Applied Biosystem, Macro gen company, the DNA sequencing results of flank sense of 16srRNA gene from 31 strains of Staphylococcus  was confirm the identification into species level: Staphylococcus haemolyticus, Staphylococcus aureus, Staphylococcus epidermidis And   Staphylococcus sciuri. Analysis of the sequences appeared that there two substitution(Transversion, Transition) in the Staphylococcus aureus strains with  Sequence ID LC090540.1 location at Range of nucleotide from 4 to 636, 100% compatibility with NCBI while no substitution appeared in the  Staphylococcus haemolyticus strains which have the sequence ID LN998078.1, 99% compatibility with NCBI also the sequence ID KR812401.1 which related to the strain Staphylococcus sciuri not appeared any substitution after sequencing analysis. Types of substitution detected in partial 16srRNA gene in Staphylococcus epidermidis strains 13  Transversion  and 5 transition substitution location at range of nucleotide from 6 to 1026 have the  Sequence ID KF575160.1 compared with data obtained from Gene Bank, these finding lead to conclusion, our assay allows rapid and confirm the detection to avoid possibility of misidentification of Staphylococcus species based on cultural analysis, the study aimed to  propose the partial sequencing of the gene as an alternative molecular tool for the analysis of Staphylococcus species and for decreasing the possibility of misidentification. New submission of local Iraqi Staphylococcus clinical isolated during the current study show successfully record of four isolate Staphylococcus sciuri, Staphylococcus epidermidis, Staphylococcus aureus and Staphylococcus haemolyticus with GenBank accession number: KY938530.1 ,KY938529.1, ,KY938528.1, and  GenBank: KY938527.1respectivelly.


2014 ◽  
Vol 48 (11) ◽  
pp. 6318-6325 ◽  
Author(s):  
Chunfang Zhang ◽  
Dongdong Zhang ◽  
Zhiling Li ◽  
Tetsuji Akatsuka ◽  
Suyin Yang ◽  
...  

2020 ◽  
Author(s):  
Ingrid Steenbergen ◽  
Roman Špánek ◽  
Dagmara Sirova ◽  
Jakub Borovec ◽  
Daniel Petrash

<div> </div><div> <p>In anoxic lacustrine systems, at low-sulphate concentrations, sulphidisation acts as a crucial pathway driving the reductive dissolution of amorphous and nanocrystalline Fe-(oxyhydr)oxides in the presence of dissolved organic matter. The cycling of intermediate sulphur through a disproportionation reaction with the available Fe(III) stocks supports a continued intermediate sulphur-based respiration mechanism often referred to as cryptic. The prevalence of the so-called cryptic mechanism in meromictic, low-sulphate lakes could be attributed to the abundance of crystalline as opposed to more reactive amorphous iron (oxyhyd)roxides, which by immobilizing ferric iron also favour microbial sulphate reduction (MSR) promoting the accumulation of solid phase intermediate sulphur and sulphides<sup>[1]</sup>. In a ferruginous, sulphate-rich and oligotrophic post-mining lake (Lake Medard, Czech Republic) we observed a departure from this condition as dissolved sulphide does not accumulate in the bottom water column nor precipitate in the anoxic sediments.<sup>[2]</sup> Analyses of the bacterioplankton abundance in the hypolimnion indicate a marked niche compartmentalization, with Fe(II)-oxidising microbes, such as <em>Gallionella</em> sp., <em>Rhodopseudomonas</em> sp. and <em>Sideroxydans</em> sp., being important at the dysoxic to anoxic (ferruginous) interface where they drive the regeneration of ferric iron. On the other hand, Fe(III)-reducers, such as <em>Geobacter</em> sp. and<em> Rhodoferax</em> sp. are present at the O<sub>2</sub>-depleted monimolimnion and in the uppermost anoxic sediments. Toward the redox interface, the chemolithotrophic community described above allows for Fe-(re)cycling and drives the oxidation and turnover of the scarcely available volatile fatty acids. Sulphate reducers (e.g. Desulfobulbaceae, <em>Chrostridia, Desulfarculus</em>) and microorganisms capable of anammox, such as <em>Nitrosomonas</em>  and <em>Nitrosospira</em> where found below the redoxcline. However, together these obligate anaerobes account for < 4% of the total bacterial OTUs identified in the monimolimnion. Our observations in this purported modern analogue to ferruginous, relatively sulphate-enriched Precambrian coastal zones raise the possibility that limited dissimilatory sulphate reduction in the Earth’s primitive ferruginous oceans was rather linked to the scarcity of suitable organic substrates and high rates of Fe-(re)cycling than to low levels of dissolved sulphate. The co-precipitation of minor amounts of gypsum/anhydrite and siderite, with Fe(II,III)-(oxyhydr)oxides further support a potential link between the deep Lake Medard precipitation environment and certain mid- to Late-Archean marginal settings, where these phases have been described to be primary and/or early diagenetic in origin. </p> </div><div> <p><sup>[1]</sup> Hansel, C.M., Lentini, C.J., Tang, Y., et al. ISME J. 9, 2400–2412 (2015). </p> </div><div> <p><sup>[2]</sup> Petrash, D.A., Jan, J., Sirová, et al. Environ. Sci. Process. Impacts 20, 1414–1426 (2018). </p> </div><div> <p> </p> </div>


2021 ◽  
Author(s):  
◽  
Ali Hosseini Taleghani

Antimicrobial resistance is becoming an imminent danger for human health, in part because of excessive consumption of antibiotics in the animal industry. Laboratory-scale anaerobic digesters (ADs) were utilized to investigate the potential removal of veterinary antibiotics (VA) in swine manure. Nine laboratory ADs were kept at 39 [plus-minus] 2 [degrees] C in incubators and were loaded every two days. The digesters had a working volume of 1.38 L (in a 1.89-L glass jar), with a hydraulic retention time (HRT) of 21 days and a loading rate of 1.0 g-VS/L-day. Carbon dioxide concentration of the biogas and pH values of the digestate verifying digester performance were measured every four days and every week, respectively. The AD process allowed 2 HRT to stabilize before the addition of the VAs, of Chlortetracycline (CTC), Tylosin, and Sulfamethazine (SMZ). Tests were conducted to compare the effects of VAs on manure nutrients, volatile solid destruction, and biogas production. Concentrations of VA added to the manure samples were 263 to 298 mg/L of CTC, 88 to 263 mg/L of Tylosin, and 1042 to 1339 mg/L of SMZ, respectively. Analysis of VA concentrations before and after the AD process was conducted to determine the VA degradation. The process of measuring the relatively low VA concentrations involves using solid-phase extraction and LC-MS-MS methodology. Further tests were performed in water under room temperature and digester temperature to approve the degradation of VAs. Amplicon sequencing analysis performed on each group using the 50 most frequent amplicon sequence variants (ASVs) showed significant discriminations between groups. A hierarchical method (UPGMA) was applied to obtain the major alteration in bacterial dynamics between treatments. The biomarkers' abundance can be employed to distinguish different antibiotics contamination.


Author(s):  
K. Pegg-Feige ◽  
F. W. Doane

Immunoelectron microscopy (IEM) applied to rapid virus diagnosis offers a more sensitive detection method than direct electron microscopy (DEM), and can also be used to serotype viruses. One of several IEM techniques is that introduced by Derrick in 1972, in which antiviral antibody is attached to the support film of an EM specimen grid. Originally developed for plant viruses, it has recently been applied to several animal viruses, especially rotaviruses. We have investigated the use of this solid phase IEM technique (SPIEM) in detecting and identifying enteroviruses (in the form of crude cell culture isolates), and have compared it with a modified “SPIEM-SPA” method in which grids are coated with protein A from Staphylococcus aureus prior to exposure to antiserum.


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