scholarly journals Root-to-Shoot Long-Distance Mobile miRNAs Identified from Nicotiana Rootstocks

2021 ◽  
Vol 22 (23) ◽  
pp. 12821
Author(s):  
Zhuying Deng ◽  
Huiyan Wu ◽  
Dongyi Li ◽  
Luping Li ◽  
Zhipeng Wang ◽  
...  
Keyword(s):  
Ex Vivo ◽  
Small Subset ◽  
Sequencing Analysis ◽  
Long Distance ◽  
Graft Union ◽  
Imaging Experiment ◽  
Rna Deep Sequencing ◽  
Small Rna Deep Sequencing ◽  
Long Distance Movement ◽  
Deep Sequencing Analysis

Root-derived mobile signals play critical roles in coordinating a shoot’s response to underground conditions. However, the identification of root-to-shoot long-distance mobile signals has been scant. In this study, we aimed to characterize root-to-shoot endogenous mobile miRNAs by using an Arabidopsis/Nicotiana interfamilial heterograft in which these two taxonomically distant species with clear genetic backgrounds had sufficient diversity in differentiating miRNA sources. Small RNA deep sequencing analysis revealed that 82 miRNAs from the Arabidopsis scion could travel through the graft union to reach the rootstock, whereas only a very small subset of miRNA (6 miRNAs) preferred the root-to-shoot movement. We demonstrated in an ex vivo RNA imaging experiment that the root-to-shoot mobile Nb-miR164, Nb-miR395 and Nb-miR397 were targeted to plasmodesmata using the bacteriophage coat protein MS2 system. Furthermore, the Nb-miR164 was shown to move from the roots to the shoots to induce phenotypic changes when its overexpressing line was used as rootstock, strongly supporting that root-derived Nb-miR164 was able to modify the scion trait via its long-distance movement.

708 IL-1B and SERPINA-3 Are Novel Markers of Aggressive Barrett's Oesophagus Phenotype Using RNA Deep Sequencing Analysis

2014 ◽  
Vol 146 (5) ◽  
pp. S-122
Author(s):  
Finbar P. MacCarthy ◽  
Shane P. Duggan ◽  
Ronan Feighery ◽  
Jacintha O ◽  
Narayanasamy Ravi ◽  
...  
Keyword(s):  
Deep Sequencing ◽  
Barrett’S Oesophagus ◽  
Sequencing Analysis ◽  
Barrett's Oesophagus ◽  
Rna Deep Sequencing ◽  
Deep Sequencing Analysis

scholarly journals Role of IL-17 Pathways in Immune Privilege: A RNA Deep Sequencing Analysis of the Mice Testis Exposure to Fluoride

2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Meijun Huo ◽  
Haijun Han ◽  
Zilong Sun ◽  
Zhaojing Lu ◽  
Xinglei Yao ◽  
...  
Keyword(s):  
Deep Sequencing ◽  
Immune Privilege ◽  
Sequencing Analysis ◽  
Rna Deep Sequencing ◽  
Deep Sequencing Analysis

From sand to sea: tracing the production and trade in glass beads from the 10th-century Cirebon shipwreck in the Java Sea

2020 ◽  
Author(s):  
Carolyn Swan
Keyword(s):  
Glass Production ◽  
Glass Beads ◽  
Rock Crystal ◽  
Long Distance ◽  
Merchant Ship ◽  
The Indian Ocean ◽  
Java Sea ◽  
Indian Ocean World ◽  
Long Distance Movement ◽  
Lapis Lazuli

Around the year 970 CE, a merchant ship carrying an assortment of goods from East Africa, Persia, India, Sri Lanka, Southeast Asia, and China foundered and sank to the bottom of the Java Sea. Thousands of beads made from many different materials—ceramic, jet, coral, banded stone, lapis lazuli, rock crystal, sapphire, ruby, garnet, pearl, gold, and glass—attest to the long-distance movement and trade of these small and often precious objects throughout the Indian Ocean world. The beads made of glass are of particular interest, as closely-dated examples are very rare and there is some debate as to where glass beads were being made and traded during this period of time. This paper examines 18 glass beads from the Cirebon shipwreck that are now in the collection of Qatar Museums, using a comparative typological and chemical perspective within the context of the 10th-century glass production. Although it remains uncertain where some of the beads were made, the composition of the glass beads points to two major production origins for the glass itself: West Asia and South Asia.

scholarly journals Maize resistance to Sugarcane mosaic virus

2017 ◽  
Vol 38 (SI 2 - 6th Conf EFPP 2002) ◽  
pp. 542-544
Author(s):  
R. Pokorný ◽  
M. Porubová
Keyword(s):  
Mosaic Virus ◽  
Systemic Infection ◽  
Sugarcane Mosaic Virus ◽  
Resistant Line ◽  
Mechanisms Of Resistance ◽  
Long Distance ◽  
Maize Hybrids ◽  
Resistant Lines ◽  
Maize Resistance ◽  
Long Distance Movement

Under greenhouse conditions 12 maize hybrids derived from crosses of four resistant lines with several lines of different level of susceptibility were evaluated for resistance to Czech isolate of Sugarcane mosaic virus (SCMV). These hybrids were not fully resistant to isolate of SCMV, but the symptoms on their newly growing leaves usually developed 1 to 3 weeks later in comparison with particular susceptible line, the course of infection was significantly slower and rate of infection lower. As for mechanisms of resistance, the presence of SCMV was detected by ELISA in inoculated leaves both of resistant and susceptible lines, but virus was detected 7 days later in resistant line. Systemic infection developed only in susceptible lines. These results indicate restriction of viral long distance movement in the resistant line.

scholarly journals Inferring Modes of Colonization for Pest Species Using Heterozygosity Comparisons and a Shared-Allele Test

Genetics ◽  
2003 ◽  
Vol 163 (2) ◽  
pp. 823-831
Author(s):  
J A Sved ◽  
H Yu ◽  
B Dominiak ◽  
A S Gilchrist
Keyword(s):  
Distance Measure ◽  
Fruit Fly ◽  
Small Samples ◽  
Pest Species ◽  
Long Distance ◽  
Resampling Methods ◽  
Shared Allele ◽  
The Core ◽  
Direct Sampling ◽  
Long Distance Movement

Abstract Long-range dispersal of a species may involve either a single long-distance movement from a core population or spreading via unobserved intermediate populations. Where the new populations originate as small propagules, genetic drift may be extreme and gene frequency or assignment methods may not prove useful in determining the relation between the core population and outbreak samples. We describe computationally simple resampling methods for use in this situation to distinguish between the different modes of dispersal. First, estimates of heterozygosity can be used to test for direct sampling from the core population and to estimate the effective size of intermediate populations. Second, a test of sharing of alleles, particularly rare alleles, can show whether outbreaks are related to each other rather than arriving as independent samples from the core population. The shared-allele statistic also serves as a genetic distance measure that is appropriate for small samples. These methods were applied to data on a fruit fly pest species, Bactrocera tryoni, which is quarantined from some horticultural areas in Australia. We concluded that the outbreaks in the quarantine zone came from a heterogeneous set of genetically differentiated populations, possibly ones that overwinter in the vicinity of the quarantine zone.

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