scholarly journals Bioexploration and Phylogenetic Placement of Entomopathogenic Fungi of the Genus Beauveria in Soils of Lebanon Cedar Forests

2021 ◽  
Vol 7 (11) ◽  
pp. 924
Author(s):  
Charbel Al Khoury ◽  
Georges Nemer ◽  
Richard Humber ◽  
Nehme El-Hachem ◽  
Jacques Guillot ◽  
...  
Keyword(s):  
Rna Polymerase Ii ◽  
Entomopathogenic Fungi ◽  
Elongation Factor ◽  
Occurrence Rate ◽  
Natural Occurrence ◽  
Indigenous Species ◽  
Translation Elongation ◽  
Lebanon Cedar ◽  
Isolation Methods ◽  
Outbreak Areas

The cedar forests of Lebanon have been threatened by the outbreak caused by climate change of a web-spinning sawfly, Cephalcia tannourinensis (Hymenoptera: Pamphiliidae), which negatively impacted the survival of one of the oldest tree species on earth. In this study, we investigated the occurrence of naturally soil-inhabiting entomopathogenic fungi for their role in containing the massive outbreak of this insect. We used a combination of fungal bioexploration methods, including insect bait and selective media. Morphological features and multilocus phylogeny—based on Sanger sequencing of the transcripts encoding the translation elongation factor 1-alpha (TEF-α), RNA polymerase II second largest subunit (RBP2), and the nuclear intergenic region (Bloc) were used for species identification. The occurrence rate of entomopathogenic fungi (EPF) varied with location, soil structure, forest structure, and isolation method. From 15 soil samples positive for fungal occurrence, a total of 249 isolates was obtained from all locations using different isolation methods. The phylogenetic analysis confirmed the existence of two novel indigenous species: Beauveria tannourinensis sp. nov. and Beauveria ehdenensis sp. nov. In conclusion, the present survey was successful (1) in optimizing the isolation methods for EPF, (2) investigating the natural occurrence of Beauveria spp. in outbreak areas of C. tannourinensis, and (3) in characterizing the presence of new Beauveria species in Lebanese cedar forest soil.

Morphological characters and phylogenetic analysis reveal a new species of Phellinus with hooked hymenial setae from Vietnam

Phytotaxa ◽  
2018 ◽  
Vol 356 (1) ◽  
pp. 91 ◽  
Author(s):  
LIN ZHU ◽  
XING JI ◽  
JING SI ◽  
BAO-KAI CUI
Keyword(s):  
Rna Polymerase Ii ◽  
Large Subunit ◽  
Elongation Factor ◽  
Morphological Characters ◽  
Molecular Data ◽  
Translation Elongation ◽  
The Status ◽  
Large Subunit Rdna ◽  
Elongation Factor 1 ◽  
A New Species

Phellinus vietnamensis sp. nov. is described from Vietnam based on morphological characters and molecular data. Morphologically, it is characterized by perennial, pileate basidiomata, a dimitic hyphal system, hooked hymenial setae, and colorless, broadly subglobose to ovoid, thick-walled basidiospores 5.5–6 × 4.8–5.2 μm. Phylogenetically, the status of Phellinus vietnamensis is strongly supported based on sequences of the nuclear internal transcribed spacer (ITS) regions, the translation elongation factor 1-α gene (EF1-α) nuclear large subunit rDNA (nrLSU) and the second largest subunits of RNA polymerase II (RPB2).

scholarly journals Multi-gene phylogeny and taxonomy of Amauroderma s. lat. (Ganodermataceae)

2020 ◽  
Vol 44 (1) ◽  
pp. 206-239 ◽  
Author(s):  
Y.-F. Sun ◽  
D.H. Costa-Rezende ◽  
J.-H. Xing ◽  
J.-L. Zhou ◽  
B. Zhang ◽  
...  
Keyword(s):  
Rna Polymerase ◽  
Rna Polymerase Ii ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Elongation Factor ◽  
Morphological Examination ◽  
Translation Elongation ◽  
Multiple Loci ◽  
Phylogenetic Studies ◽  
Molecular Phylogenetic

Amauroderma s.lat. has been defined mainly by the morphological features of non-truncate and double-walled basidiospores with a distinctly ornamented endospore wall. In this work, taxonomic and phylogenetic studies on species of Amauroderma s.lat. are carried out by morphological examination together with ultrastructural observations, and molecular phylogenetic analyses of multiple loci including the internal transcribed spacer regions (ITS), the large subunit of nuclear ribosomal RNA gene (nLSU), the largest subunit of RNA polymerase II (RPB1) and the second largest subunit of RNA polymerase II (RPB2), the translation elongation factor 1-α gene (TEF) and the β-tubulin gene (TUB). The results demonstrate that species of Ganodermataceae formed ten clades. Species previously placed in Amauroderma s.lat. are divided into four clades: Amauroderma s.str., Foraminispora, Furtadoa and a new genus Sanguinoderma. The classification of Amauroderma s. lat. is thus revised, six new species are described and illustrated, and eight new combinations are proposed. SEM micrographs of basidiospores of Foraminispora and Sanguinoderma are provided, and the importance of SEM in delimitation of taxa in this study is briefly discussed. Keys to species of Amauroderma s.str., Foraminispora, Furtadoa, and Sanguinoderma are also provided.

A new species and a new combination in the genus Aureoboletus (Boletales, Boletaceae) from southern China

Phytotaxa ◽  
2015 ◽  
Vol 222 (2) ◽  
pp. 129 ◽  
Author(s):  
Nian-Kai Zeng ◽  
MING ZHANG ◽  
ZHI-QUN Liang
Keyword(s):  
Rna Polymerase Ii ◽  
Southern China ◽  
Large Subunit ◽  
Line Drawing ◽  
Elongation Factor ◽  
Molecular Data ◽  
New Combination ◽  
Translation Elongation ◽  
Microscopic Features ◽  
A New Species

Two lineages of Aureoboletus (Boletales, Boletaceae) from southern China were revealed by using molecular data based on combined dataset of the nuclear ribosomal large subunit RNA (nrLSU), the translation elongation factor apha-1 (tef1-a) and the largest subunit of RNA polymerase II (rpb1). One of them corresponds with the previous morphology-based taxon, viz. Boletellus longicollis, another one is different from those taxa described based on morphological features. And, thus, Auroboletus clavatus sp. nov. and A. longicollis comb. nov. were proposed. A detailed description, colour photos of fresh basidiomata, and a line-drawing of microscopic features of the two taxa were provided.

scholarly journals Two New Species of Fibrodontia (Trechisporales, Basidiomycota) with a Key to Worldwide Species

2021 ◽  
Vol 7 (11) ◽  
pp. 982
Author(s):  
Shi-Liang Liu ◽  
Shuang-Hui He ◽  
Dong-Mei Liu ◽  
Li-Wei Zhou
Keyword(s):  
New Species ◽  
Rna Polymerase Ii ◽  
Elongation Factor ◽  
Taxonomic Status ◽  
Distinct Species ◽  
Tianshan Mountain ◽  
Translation Elongation ◽  
Data Set ◽  
Hyphal System ◽  
Two New Species

Fibrodontia is a genus of wood-inhabiting fungi consisting of four species so far, including F. gossypina as generic type. Two new species, Fibrodontia austrosinensis and F. subalba, are described and illustrated from China. Fibrodontia austrosinensis from southwestern China is characterized by a grandinioid to odontioid hymenophore with numerous small aculei, a dimitic hyphal system with scattered, smooth skeletal hyphae and ellipsoid basidiospores measuring 4.2–5.2 × 3.5–4.5 μm. Fibrodontia subalba from the West Tianshan Mountain in northwestern China is distinguished by an odontioid to hydnoid hymenophore, a dimitic hyphal system, and ellipsoid basidiospores measuring 3.7–4.4 × 2.8–3.4 μm. The phylogenies inferred from the data set of nuc rDNA ITS1-5.8S-ITS2 (ITS) and D1–D2 domains of nuc 28S rDNA (28S), and that of ITS, 28S, translation elongation factor (tef1α), and RNA polymerase II second largest subunit (rpb2) supported Fibrodontia as a monophyletic genus in the Trechisporales, and F. austrosinensis and F. subalba as separate lineages within Fibrodontia. Multi-rate Poisson Tree Processes, Automatic Barcode Gap Discovery and genetic distance methods based on ITS sequences of Fibrodontia also supported F. austrosinensis and F. subalba as distinct species. The taxonomic status of F. fimbriata that was recently transferred from Cystidiodendron, is briefly discussed. A key to all six known species of Fibrodontia is provided.

scholarly journals Redefining genera of cereal pathogens: Oculimacula, Rhynchosporium and Spermospora

2020 ◽  
Author(s):  
P.W. Crous ◽  
U. Braun ◽  
B.A. McDonald ◽  
C.L. Lennox ◽  
J. Edwards ◽  
...  
Keyword(s):  
Rna Polymerase Ii ◽  
Dna Sequences ◽  
Large Subunit ◽  
Elongation Factor ◽  
Morphological Characteristics ◽  
Minor Importance ◽  
Ammophila Arenaria ◽  
Translation Elongation ◽  
Elongation Factor 1 Alpha ◽  
Three New Species

The taxonomy of Oculimacula, Rhynchosporium and Spermospora is re-evaluated, along with that of phylogenetically related genera. Isolates are identified using comparisons of DNA sequences of the internal transcribed spacer ribosomal RNA locus (ITS), partial translation elongation factor 1-alpha (tef1), actin (act), DNA-directed RNA polymerase II largest (rpb1) and second largest subunit (rpb2) genes, and the nuclear ribosomal large subunit (LSU), combined with their morphological characteristics. Oculimacula is restricted to two species, O. acuformis and O. yallundae, with O. aestiva placed in Cyphellophora, and O. anguioides accommodated in a new genus, Helgardiomyces. Rhynchosporium s. str. is restricted to species with 1-septate conidia and hooked apical beaks, while Rhynchobrunnera is introduced for species with 1–3-septate, straight conidia, lacking any apical beak. Rhynchosporium graminicola is proposed to replace the name R. commune applied to the barley scald pathogen based on nomenclatural priority. Spermospora is shown to be paraphyletic, representing Spermospora (type: S. subulata), with three new species, S. arrhenatheri, S. loliiphila and S. zeae, and Neospermospora gen. nov. (type: N. avenae). Ypsilina (type: Y. graminea), is shown to be monophyletic, but appears to be of minor importance on cereals. Finally, Vanderaaea gen. nov. (type: V. ammophilae), is introduced as a new coelomycetous fungus occurring on dead leaves of Ammophila arenaria.

New species of Echinoderma and Lepiota (Agaricaceae) from China

Phytotaxa ◽  
2020 ◽  
Vol 447 (4) ◽  
pp. 221-236
Author(s):  
YA-JUN HOU ◽  
ZAI-WEI GE
Keyword(s):  
Rna Polymerase Ii ◽  
Large Subunit ◽  
Elongation Factor ◽  
Its Region ◽  
Morphological Characters ◽  
Molecular Evidence ◽  
Translation Elongation Factor ◽  
Translation Elongation ◽  
The Tropics ◽  
Elongation Factor 1

Three species of Lepiota sensu lato from China are described and illustrated based on morphological characters and molecular evidence. Echinoderma flavidoasperum and Lepiota omninoflava are new to science, while Lepiota echinacea is newly reported from China. Echinoderma flavidoasperum is characterized by a yellow pileus, nearly smooth stipe that discolors light red when bruised, and subcylindrical basidiospores. Lepiota omninoflava, so far only found in the tropics, is characterized by the yellow basidiomata, ellipsoid basidiospores and the absence of cheilocystidia. All three of the Chinese species are discussed and placed within a phylogeny based on the internal transcribed spacer (ITS) region, the large subunit (LSU) of the ribosomal DNA, the translation elongation factor 1-α (tef1-α) and the second largest subunit of RNA polymerase II (rpb2).

Cantharellus albus, a striking new species from Southwest China

Phytotaxa ◽  
2020 ◽  
Vol 470 (2) ◽  
pp. 133-144
Author(s):  
SI-PENG JIAN ◽  
RONG DAI ◽  
JUN GAO ◽  
BANG FENG
Keyword(s):  
New Species ◽  
Rna Polymerase Ii ◽  
Ribosomal Rna ◽  
Large Subunit ◽  
Elongation Factor ◽  
Translation Elongation ◽  
Elongation Factor 1 Alpha ◽  
Alpha Gene ◽  
Elongation Factor 1 ◽  
A New Species

A new species, Cantharellus albus, was collected from southwestern China and described with both morphological and molecular characters. It differs from other species of Cantharellus by its smooth white pileus, white hymenophore, and white stipe, the latter turning yellow after bruising. The phylogenetic tree inferred from the combined dataset of three DNA fragments, namely large subunit ribosomal RNA gene (LSU), RNA polymerase II second largest subunit (rpb2), and translation elongation factor 1-alpha gene (tef1), indicated that the new species is distinct from other species of Cantharellus and is a member of sect. Flavobrunnei within the subgenus Parvocantharellus.

scholarly journals The translation elongation factor eEF1A1 couples transcription to translation during heat shock response

eLife ◽  
2014 ◽  
Vol 3 ◽  
Author(s):  
Maria Vera ◽  
Bibhusita Pani ◽  
Lowri A Griffiths ◽  
Christian Muchardt ◽  
Catherine M Abbott ◽  
...  
Keyword(s):  
Heat Shock ◽  
Rna Polymerase Ii ◽  
Heat Shock Response ◽  
Mammalian Cells ◽  
Elongation Factor ◽  
Translation Elongation Factor ◽  
Translation Elongation ◽  
Hsp70 Mrna ◽  
Shock Response ◽  
Attractive Therapeutic Target

Translation elongation factor eEF1A has a well-defined role in protein synthesis. In this study, we demonstrate a new role for eEF1A: it participates in the entire process of the heat shock response (HSR) in mammalian cells from transcription through translation. Upon stress, isoform 1 of eEF1A rapidly activates transcription of HSP70 by recruiting the master regulator HSF1 to its promoter. eEF1A1 then associates with elongating RNA polymerase II and the 3′UTR of HSP70 mRNA, stabilizing it and facilitating its transport from the nucleus to active ribosomes. eEF1A1-depleted cells exhibit severely impaired HSR and compromised thermotolerance. In contrast, tissue-specific isoform 2 of eEF1A does not support HSR. By adjusting transcriptional yield to translational needs, eEF1A1 renders HSR rapid, robust, and highly selective; thus, representing an attractive therapeutic target for numerous conditions associated with disrupted protein homeostasis, ranging from neurodegeneration to cancer.

scholarly journals Maize/Soybean Relay Strip Intercropping Reduces the Occurrence of Fusarium Root Rot and Changes the Diversity of the Pathogenic Fusarium Species

Pathogens ◽  
2020 ◽  
Vol 9 (3) ◽  
pp. 211
Author(s):  
Xiaoli Chang ◽  
Li Yan ◽  
Muhammd Naeem ◽  
Muhammad Ibrahim Khaskheli ◽  
Hao Zhang ◽  
...  
Keyword(s):  
Rna Polymerase Ii ◽  
Root Rot ◽  
Species Complex ◽  
Crop Yields ◽  
Fusarium Species ◽  
Elongation Factor ◽  
Translation Elongation ◽  
Soybean Root ◽  
Continuous Maize ◽  
Strip Intercropping

Fusarium species are the most detrimental pathogens of soybean root rot worldwide, causing large loss in soybean production. Maize/soybean relay strip intercropping has significant advantages on the increase of crop yields and efficient use of agricultural resources, but its effects on the occurrence and pathogen population of soybean root rot are rarely known. In this study, root rot was investigated in the fields of the continuous maize/soybean strip relay intercropping and soybean monoculture. Fusarium species were isolated from diseased soybean roots and identified based on sequence analysis of translation elongation factor 1α (EF-1α) and RNA polymerase II second largest subunit (RPB2), and the diversity and pathogenicity of these species were also analyzed. Our results showed that intercropping significantly decreased soybean root rot over monoculture. A more diverse Fusarium population including Fusarium solani species complex (FSSC), F. incarnatum-equiseti species complex (FIESC), F. oxysporum, F. fujikuroi, F. proliferatum and F. verticillioides, F. graminearum and F. asiaticum was identified from intercropping while FSSC, FIESC, F. oxysporum, F. commune, F. asiaticum and F. meridionale were found from monoculture. All Fusarium species caused soybean root infection but exhibited distinct aggressiveness. The most aggressive F. oxysporum was more frequently isolated in monoculture than intercropping. FSSC and FIESC were the dominant species complex and differed in their aggressiveness. Additionally, F. fujikuroi, F. proliferatum and F. verticillioides were specifically identified from intercropping with weak or middle aggressiveness. Except for F. graminearum, F. meridionale and F. asiaticum were firstly reported to cause soybean root rot in China. This study indicates maize/soybean relay strip intercropping can reduce soybean root rot, change the diversity and aggressiveness of Fusarium species, which provides an important reference for effective management of this disease.

Death cap mushrooms from southern Australia: additions to Amanita (Amanitaceae, Agaricales) section Phalloideae Clade IX

2017 ◽  
Vol 30 (4) ◽  
pp. 371 ◽  
Author(s):  
E. M. Davison ◽  
D. Giustiniano ◽  
F. Busetti ◽  
G. M. Gates ◽  
K. Syme
Keyword(s):  
Rna Polymerase Ii ◽  
Large Subunit ◽  
Elongation Factor ◽  
Translation Elongation Factor ◽  
Translation Elongation ◽  
Chromatography Tandem Mass Spectrometry ◽  
Liquid Chromatography Tandem Mass ◽  
Internal Transcribed Spacer Sequences ◽  
Large Subunit Rrna ◽  
Elongation Factor 1

The following three similar Amanita spp. are described: Amanita djarilmari E.M.Davison, A. gardneri E.M.Davison from the south-west of Western Australia and A. millsii E.M.Davison & G.M.Gates (=A. sp. 10 ZLY-2014 HKAS 77322 in KUN) from Tasmania. All have a white- or pale-coloured pileus and white universal veil, but differ in the shape of the bulb, spore shape, and structure of the universal veil. All are from subgenus Lepidella section Phalloideae. Phylogenetic analysis showed that these species cannot be separated on the basis of data derived from nuclear ribosomal internal transcribed-spacer sequences. They can be separated in a multi-locus phylogeny of the 28S nuclear ribosomal large-subunit rRNA region, RNA polymerase-II region, β-tubulin region and translation elongation-factor 1-α region. Amanita djarilmari, A. gardneri, A. millsii and two other previously described species in section Phalloideae from southern Australia (A. eucalypti and A. marmorata) cluster in Clade IX. These, together with other species in this clade, segregate into two lineages, namely, Clade IX A, with a white or pale pileus, and Clade IX B, with a brown pileus. Solvent extraction, followed by liquid-chromatography tandem-mass spectrometry of A. djarilmari, A. eucalypti, A. gardneri and A. marmorata basidiomes did not detect the highly toxic amatoxins α-amanitin and β-amanitin, but did detect the phallotoxins phallacidin and phalloidin.

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