scholarly journals Molecular Cytogenetics of Eurasian Species of the Genus Hedysarum L. (Fabaceae)

Plants ◽  
2021 ◽  
Vol 10 (1) ◽  
pp. 89
Author(s):  
Olga Yu. Yurkevich ◽  
Tatiana E. Samatadze ◽  
Inessa Yu. Selyutina ◽  
Svetlana I. Romashkina ◽  
Svyatoslav A. Zoshchuk ◽  
...  
Keyword(s):  
Chromosome Pair ◽  
Molecular Cytogenetics ◽  
5S Rdna ◽  
Genomic Diversity ◽  
45S Rdna ◽  
Species Specific ◽  
Taxonomic Studies ◽  
First Time ◽  
Eurasian Species

The systematic knowledge on the genus Hedysarum L. (Fabaceae: Hedysareae) is still incomplete. The species from the section Hedysarum are valuable forage and medicinal resources. For eight Hedysarum species, we constructed the integrated schematic map of their distribution within Eurasia based on currently available scattered data. For the first time, we performed cytogenomic characterization of twenty accessions covering eight species for evaluating genomic diversity and relationships within the section Hedysarum. Based on the intra- and interspecific variability of chromosomes bearing 45S and 5S rDNA clusters, four main karyotype groups were detected in the studied accessions: (1) H.arcticum, H. austrosibiricum, H. flavescens, H. hedysaroides, and H. theinum (one chromosome pair with 45S rDNA and one pair bearing 5S rDNA); (2) H. alpinum and one accession of H. hedysaroides (one chromosome pair with 45S rDNA and two pairs bearing 5S rDNA); (3) H. caucasicum (one chromosome pair with 45S rDNA and one chromosome pair bearing 5S rDNA and 45S rDNA); (4) H. neglectum (two pairs with 45S rDNA and one pair bearing 5S rDNA). The species-specific chromosomal markers detected in karyotypes of H. alpinum, H. caucasicum, and H. neglectum can be useful in taxonomic studies of this section.

scholarly journals Comparative cytogenetics of Astyanax (Teleostei: Characidae) from the upper Paraguay basin

2018 ◽  
Vol 16 (1) ◽  
Author(s):  
Thais K. S. S. Teixeira ◽  
Paulo C. Venere ◽  
Daniela C. Ferreira ◽  
Sandra Mariotto ◽  
Jonathan P. Castro ◽  
...  
Keyword(s):  
Physical Mapping ◽  
18S Rdna ◽  
Diploid Number ◽  
5S Rdna ◽  
Neotropical Region ◽  
Comparative Cytogenetics ◽  
Karyotype Morphology ◽  
Taxonomic Studies

ABSTRACT Astyanax is one of the most abundant and diverse taxa of fishes in the Neotropical region. In order to increase the amount of cytogenetic information for Astyanax as well as to exhibit data to subsidize future taxonomic studies, this work analyzed three species of Astyanax: two species are cryptic, and are here reported to live in syntopy (A. abramis and A. lacustris); the first karyotype description for A. pirapuan is also presented. Cytogenetic analyzes reveal a diploid number of 2n=50 chromosomes for three species, yet with differences in their karyotype morphology. The physical mapping of 18S rDNA showed up to thirteen sites in A. pirapuan and two in A. abramis and A. lacustris. The physical mapping of 5S rDNA has proven to be an effective marker for the characterization of species of Astyanax studied in this work.

scholarly journals Molecular cytogenetics of Hedysarum gmelinii Ledeb. and H. setigerum Turcz. (Fabaceae) from populations of Southern Siberia

2021 ◽  
Vol 20 (1) ◽  
pp. 517-519
Author(s):  
O. Yu. Yurkevich ◽  
T. E. Samatadze ◽  
I. Yu. Selyutina ◽  
S. A. Zoshchuk ◽  
A. V. Amosova ◽  
...  
Keyword(s):  
Chromosome Numbers ◽  
Related Species ◽  
Karyotype Analysis ◽  
Molecular Cytogenetics ◽  
5S Rdna ◽  
Chromosome Morphology ◽  
Closely Related Species ◽  
Southern Siberia ◽  
Close Relationship ◽  
First Time

For the first time, a comparative karyotype analysis of closely related species Hedysarum gmelinii andH. setigerum (Hedysarum section Multicaulia) grown in Southern Siberia, has been performed by molecular cytogeneticmarkers. Chromosome numbers in karyotypes of these species were specified – 2n = 4х = 32. In some accessions, additionalB chromosomes were revealed. FISH analyses indicated high similarities in chromosome morphology and also patternsof chromosomal distributions of 45S and 5S rDNA clusters in karyotypes of H. gmelinii and H. setigerum, which confirmsthe close relationship between their genomes.

scholarly journals Chromosome polymorphism in species of the genus Hedysarum L. (Fabaceae) originated from Southern Sibеria

2020 ◽  
Vol 19 (1) ◽  
pp. 14-16
Author(s):  
O. Yu. Yurkevich ◽  
T. E. Samatadze ◽  
I. Yu. Selyutina ◽  
S. I. Romashkina ◽  
S. A. Zoshchuk ◽  
...  
Keyword(s):  
Close Relationships ◽  
5S Rdna ◽  
Chromosomal Polymorphism ◽  
Rdna Locus ◽  
Chromosome Polymorphism ◽  
45S Rdna ◽  
High Similarity ◽  
Southern Siberia ◽  
Molecular Cytogenetic ◽  
First Time

For the first time, chromosomal polymorphism in karyotypes of three species from the section Hedysarum (= syn. Gamotion) of the genus Hedysarum L. (Fabaceae) grown in Southern Siberia has been studied with the useof molecular cytogenetic markers. This comparative molecular cytogenetic analysis revealed high similarity in morphology of chromosomes in H. alpinum L., H. austrosibiricum B. Fedtsch. and H. theinum Krasnob. as well as in patterns ofdistribution of 45S and 5S rDNA loci in their karyotypes confirming their close relationships. Considerable intra-specificpolymorphism on 45S rDNA chromosome localization was detected in H. theinum. In karyotype of H. alpinum, unlikethe other two species, two chromosome pairs bearing 5S rDNA locus were observed which could be used as additionalspecies-specific markers.

Distribution of FISH oligo-5S rDNA and oligo-(AGGGTTT)3 in Hibiscus mutabilis L.

Genome ◽  
2021 ◽  
pp. 1-10
Author(s):  
Xiaomei Luo ◽  
Zhoujian He
Keyword(s):  
Chromosome Number ◽  
Physical Map ◽  
Molecular Cytogenetics ◽  
5S Rdna ◽  
Chromosome Length ◽  
Chromosome Identification ◽  
Karyotype Asymmetry ◽  
First Time ◽  
Distribution Of Fish

Hibiscus exhibits high variation in chromosome number both within and among species. The Hibiscus mutabilis L. karyotype was analyzed in detail using fluorescence in situ hybridization (FISH) with oligonucleotide probes for (AG3T3)3 and 5S rDNA, which were tested here for the first time. In total, 90 chromosomes were counted in prometaphase and metaphase, and all exhibited similarly intense (AG3T3)3 signals at both ends. (AG3T3)3 showed little variation and thus did not allow discrimination among H. mutabilis chromosomes, but its location at both ends confirmed the integrity of each chromosome, thus contributing to accurate counting of the numerous, small chromosomes. Oligo-5S rDNA marked the proximal/distal regions of six chromosomes: weak signals on chromosomes 7 and 8, slightly stronger signals on chromosomes 15 and 16, and very strong signals on chromosomes 17 and 18. Therefore, 5S rDNA could assist in chromosome identification in H. mutabilis. Metaphase chromosome lengths ranged from 3.00 to 1.18 μm, indicating small chromosomes. The ratios of longest to shortest chromosome length in prometaphase and metaphase were 2.58 and 2.54, respectively, indicating karyotype asymmetry in H. mutabilis. These results provide an exact chromosome number and a physical map, which will be useful for genome assembly and contribute to molecular cytogenetics in the genus Hibiscus.

scholarly journals Establishment and Optimization of Molecular Cytogenetic Techniques (45S Rdna-FISH, GISH And Fiber-FISH) In Kiwifruit (Actinidia L.)

2021 ◽  
Author(s):  
Yang Zhao ◽  
Honghong Deng ◽  
Yao Chen ◽  
Jihan Li ◽  
Silei Chen ◽  
...  
Keyword(s):  
Fiber Quality ◽  
Molecular Cytogenetics ◽  
45S Rdna ◽  
Metaphase Chromosomes ◽  
Physical Size ◽  
Molecular Cytogenetic ◽  
Rdna Fish ◽  
Molecular Cytogenetic Techniques ◽  
First Time

Abstract Background: Kiwifruit has long been regarded as ‘the king of fruits’ for its nutritional importance. However, the molecular cytogenetics of kiwifruit has long been hampered because of the large number of basic chromosome (x=29), the inherent small size and highly similar morphology of metaphase chromosomes. Fluorescence in situ hybridization (FISH) is an indispensable molecular cytogenetic technique widely used in many plant species. Herein, the effects of post-hybridization washing temperature on FISH, blocking DNA concentration on genomic in situ hybridization (GISH), extraction method on nuclei isolation and the incubation time on the DNA fiber quality in kiwifruit were evaluated.Results: The post-hybridization washing in 2×SSC solution for 3×5 min at 37 ˚C ensured high stringency and distinct specific FISH signals in kiwifruit somatic chromosomes. The use of 50× blocking DNA provided an efficient and reliable means of discriminating between chromosomes derived from in the hybrids of A. chinensis var. chinensis (2n=2x=58) × A. eriantha Benth (2n=2x=58), and inferring the participation of parental genitors. The chopping method established in the present study were found to be very suitable for preparation of leaf nuclei in kiwifruit. A high-quality linear DNA fiber was achieved by an incubation of 20 min. The physical size of 45S rDNA signals was approximately 35-40 μmm revealed by the highly reproducible fiber-FISH procedures established and optimized in this study.Conclusions: The molecular cytogenetic techniques (45S rDNA-FISH, GISH, and high-resolution fiber-FISH) for kiwifruit was for the first time established and optimized in the present study, which is the foundation for the future genomic and evolutionary studies.

Bioacoustics characterization of some anatolian endemic and sub-endemic Katydids (Orthoptera; Tettigoniidae; Bradyporinae, Phaneropterinae and Tettigoniinae) 

Zootaxa ◽  
2019 ◽  
Vol 4603 (2) ◽  
pp. 289
Author(s):  
MEHMET SAİT TAYLAN ◽  
ABBAS MOL ◽  
HASAN SEVGİLİ ◽  
DENİZ ŞİRİN
Keyword(s):  
Black Sea ◽  
Additional Data ◽  
Field Trips ◽  
Acoustic Parameters ◽  
Black Sea Region ◽  
Male Calling ◽  
Species Specific ◽  
First Time ◽  
Bush Cricket

Seventeen endemic and three sub-endemic species belonging to three subfamilies of Tettigoniidae (Orthoptera: Bradyporinae, Phaneropterinae and Tettigoniinae) were sampled during field trips throughout different regions of Anatolia between 2015 and 2018 (except one taxon). Acoustic parameters of these 20 bush-cricket species affiliated to 12 genera (Apholidoptera, Bradyporus, Decticus, Eupholidoptera, Parapholidoptera, Pezodrymadusa, Pholidoptera, Polysarcus, Psorodonotus, Squamiana, Uvarovistia and Yalvaciana) have been described for the first time in this study. Bioacoustical analysis shows that male calling songs are species-specific for the genera Bradyporus, Parapholidoptera, Pholidoptera, Apholidoptera, Uvarovistia and Psorodonotus. However, there are no distinct differences among species of the genus Pezodrymadusa. Moreover, our additional data on genus Eupholidoptera indicate that there are some different song patterns within the genus. The song description of Uvarovistia zebra presented here is the second bioacoustics data on this genus. The acoustical analyses data support the morpho-species hypothesis of Psorodonotus suphani Taylan & Şirin, 2014, which is known from Süphan Mountain (Bitlis province, Eastern part of Turkey) and reject Kaya & Çıplak (2017), which recommended it as synonym to P. caucasicus (Fischer von Waldheim, 1846) (commonly known as a Black Sea Region species).

scholarly journals FISH-mapping of the 5S rDNA locus in chili peppers (Capsicum-Solanaceae)

2016 ◽  
Vol 88 (1) ◽  
pp. 117-125 ◽  
Author(s):  
PATRICIA M. AGUILERA ◽  
HUMBERTO J. DEBAT ◽  
MARISEL A. SCALDAFERRO ◽  
DARDO A. MARTÍ ◽  
MAURO GRABIELE
Keyword(s):  
Physical Mapping ◽  
Chromosome Pair ◽  
5S Rdna ◽  
Rdna Locus ◽  
Metacentric Chromosome ◽  
Haploid Genome ◽  
Fish Mapping ◽  
Chili Peppers

ABSTRACT We present here the physical mapping of the 5S rDNA locus in six wild and five cultivated taxa of Capsicum by means of a genus-specific FISH probe. In all taxa, a single 5S locus per haploid genome that persistently mapped onto the short arm of a unique metacentric chromosome pair at intercalar position, was found. 5S FISH signals of almost the same size and brightness intensity were observed in all the analyzed taxa. This is the first cytological characterization of the 5S in wild taxa of Capsicum by using a genus-derived probe, and the most exhaustive and comprehensive in the chili peppers up to now. The information provided here will aid the cytomolecular characterization of pepper germplasm to evaluate variability and can be instrumental to integrate physical, genetic and genomic maps already generated in the genus.

scholarly journals Detection and Characterization of Distinct Alphacoronaviruses in Five Different Bat Species in Denmark

Viruses ◽  
2018 ◽  
Vol 10 (9) ◽  
pp. 486 ◽  
Author(s):  
Christina Lazov ◽  
Mariann Chriél ◽  
Hans Baagøe ◽  
Esben Fjederholt ◽  
Yu Deng ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Rt Pcr ◽  
The United Kingdom ◽  
Faecal Samples ◽  
Myotis Daubentonii ◽  
Pcr Assays ◽  
Species Specific ◽  
First Time ◽  
Geographical Locations

Bat populations harbour a multitude of viruses; some of these are pathogenic or potentially pathogenic in other animals or humans. Therefore, it is important to monitor the populations and characterize these viruses. In this study, the presence of coronaviruses (CoVs) in different species of Danish bats was investigated using active surveillance at different geographical locations in Denmark. Faecal samples were screened for the presence of CoVs using pan-CoV real-time RT-PCR assays. The amplicons, obtained from five different species of bats, were sequenced. Phylogenetic analysis revealed a species-specific clustering with the samples from Myotis daubentonii, showing a close resemblance to coronavirus sequences obtained from the same species of bat in Germany and the United Kingdom. Our results show, for the first time, that multiple, distinct alphacoronaviruses are present in the Danish bat populations.

scholarly journals Interspecific cytogenetic relationships in three Acestrohynchus species (Acestrohynchinae, Characiformes) reveal the existence of possible cryptic species

2020 ◽  
Vol 14 (1) ◽  
pp. 27-42
Author(s):  
Alber Sousa Campos ◽  
Ramon Marin Favarato ◽  
Eliana Feldberg
Keyword(s):  
Chromosome Pair ◽  
Organizer Region ◽  
Nucleolus Organizer Region ◽  
5S Rdna ◽  
Nucleolus Organizer ◽  
Telomeric Sequences ◽  
Interstitial Telomeric Sequences ◽  
Rdna Sites ◽  
Species Specific

The karyotypes and chromosomal characteristics of three Acestrorhynchus Eigenmann et Kennedy, 1903 species were examined using conventional and molecular protocols. These species had invariably a diploid chromosome number 2n = 50. Acestrorhynchus falcatus (Block, 1794) and Acestrorhynchus falcirostris (Cuvier, 1819) had the karyotype composed of 16 metacentric (m) + 28 submetacentric (sm) + 6 subtelocentric (st) chromosomes while Acestrorhynchus microlepis (Schomburgk, 1841) had the karyotype composed of 14m+30sm+6st elements. In this species, differences of the conventional and molecular markers between the populations of Catalão Lake (AM) and of Apeu Stream (PA) were found. Thus the individuals of Pará (Apeu) were named Acestrorhynchus prope microlepis. The distribution of the constitutive heterochromatin blocks was species-specific, with C-positive bands in the centromeric and telomeric regions of a number of different chromosomes, as well as in interstitial sites and completely heterochromatic arms. The phenotypes of nucleolus organizer region (NOR) were simple, i. e. in a terminal position on the p arm of pair No. 23 except in A. microlepis, in which it was located on the q arm. Fluorescence in situ hybridization (FISH) revealed 18S rDNA sites on one chromosome pair in karyotype of A. falcirostris and A. prope microlepis (pair No. 23) and three pairs (Nos. 12, 23, 24) in A. falcatus and (Nos. 8, 23, 24) in A. microlepis; 5S rDNA sites were detected in one chromosome pair in all three species. The mapping of the telomeric sequences revealed terminal sequences in all the chromosomes, as well as the presence of interstitial telomeric sequences (ITSs) in a number of chromosome pairs. The cytogenetic data recorded in the present study indicate that A. prope microlepis may be an unnamed species.

scholarly journals Taxonomic studies on species belonging to subgenus Eutricharaea Thomson of the genus Megachile (Hymenoptera: Megachilidae)

2019 ◽  
Vol 11 (3) ◽  
pp. 612-618
Author(s):  
Priyanka Kumari ◽  
Neelima R. Kumar ◽  
Avtar K. Sidhu ◽  
Kailash Chandra
Keyword(s):  
Large Scale ◽  
Solitary Bee ◽  
Northern Plains ◽  
Spatio Temporal ◽  
Taxonomic Studies ◽  
First Time ◽  
Taxonomic Characterization ◽  
Different Parts ◽  
Conservation Of Biodiversity

Solitary bees belonging to genus Megachile are important pollinators very crucial for the wellbeing of the ecosystem. Large scale surveying will return a wealth of spatio-temporal species data which is critical for systematics, taxonomy and conservation of biodiversity. Detailed taxonomic characterization of solitary bee species belonging to subgenus Eutricharaea collected from the Sutlej basin of Indian northern plains is being described. A total of four species viz. Megachile hera Bingham, M. femorata Smith, M. vera Cameron and M. argentata Cameron belonging to subgenus Eutricharaea with 18 examples were studied. Detailed morphological descriptions, zoogeographic records, specimen examined, floral associations with illustrations and morphological measurements have been provided. Various areas finalised from different parts of Sutlej basin of northern plains were surveyed for the first time for the documentation of Megachile fauna. Hence, all these four species are first records for the studied area.

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