scholarly journals LeafScope: A Portable High-Resolution Multispectral Imager for In Vivo Imaging Soybean Leaf

Sensors ◽  
2020 ◽  
Vol 20 (8) ◽  
pp. 2194
Author(s):  
Liangju Wang ◽  
Yunhong Duan ◽  
Libo Zhang ◽  
Jialei Wang ◽  
Yikai Li ◽  
...  
Keyword(s):  
High Resolution ◽  
Low Cost ◽  
Small Region ◽  
Plant Phenotyping ◽  
Portable Devices ◽  
Hardware System ◽  
Soybean Plants ◽  
Water Treatments ◽  
Multispectral Imager

Portable devices for measuring plant physiological features with their isolated measuring chamber are playing an increasingly important role in plant phenotyping. However, currently available commercial devices of this type, such as soil plant analysis development (SPAD) meter and spectrometer, are dot meters that only measure a small region of the leaf, which does not perfectly represent the highly varied leaf surface. This study developed a portable and high-resolution multispectral imager (named LeafScope) to in-vivo image a whole leaf of dicotyledon plants while blocking the ambient light. The hardware system is comprised of a monochrome camera, an imaging chamber, a lightbox with different bands of light-emitting diodes (LEDs) array, and a microcontroller. During measuring, the device presses the leaf to lay it flat in the imaging chamber and acquires multiple images while alternating the LED bands within seconds in a certain order. The results of an experiment with soybean plants clearly showed the effect of nitrogen and water treatments as well as the genotype differences by the color and morphological features from image processing. We conclude that the low cost and easy to use LeafScope can provide promising imaging quality for dicotyledon plants, so it has great potential to be used in plant phenotyping.

scholarly journals Development of a Single-Board Computer High-Resolution Microendoscope (PiHRME) to Detect Cervical Cancer in Low-Resource Settings

2016 ◽  
Vol 2 (3_suppl) ◽  
pp. 7s-7s
Author(s):  
Sonia Parra ◽  
Pelham Keahey ◽  
Kathleen Schmeler ◽  
Mauricio Maza ◽  
Philip Castle ◽  
...  
Keyword(s):  
Cervical Cancer ◽  
High Resolution ◽  
Precancerous Lesions ◽  
Point Of Care ◽  
Low Cost ◽  
Cancer Society ◽  
Single Board Computer ◽  
Low Resource ◽  
The Cost

Abstract 35 Almost 90% of cervical cancer deaths occur in developing countries, with the highest incidence rates occurring in Central and South America and sub-Saharan Africa.1 While early detection and treatment of cervical precancerous lesions effectively prevent the development of invasive cervical cancer, limited resources and infrastructure make it difficult to implement standard cervical cancer screening methods in low-resource areas. In many low-resource areas, health workers use visual inspection of the cervix following the application of acetic acid (VIA) to identify precancerous lesions. While VIA reduces cervical cancer mortality, it is associated with a low specificity. A number of recent studies have shown that high-resolution optical imaging can identify precancerous lesions in vivo with higher specificity than VIA; however, the cost of these imaging systems is a barrier to wider scale implementation. We therefore have developed a low-cost, high-resolution microendoscope controlled by a single-board computer (PiHRME) to detect cervical precancerous lesions at the point-of-care. The PiHRME allows healthcare providers to image the cervix in vivo and view cervical epithelial cells in real time with sub-cellular resolution. Here we demonstrate that a low cost ($35) single-board computer, the Raspberry Pi, can be used to reduce the cost and improve the mobility of a high-resolution optical imaging system without compromising its spatial resolution. Thus, HRME screening of cervical cancer can be made more accessible in low-resource areas. The PiHRME is currently being evaluated in a pilot study in El Salvador to assess its effectiveness at the point-of-care. 1American Cancer Society. Global Cancer Facts & Figures 3rd Edition. Atlanta: American Cancer Society; 2015. AUTHORS' DISCLOSURES OF POTENTIAL CONFLICTS OF INTEREST: Sonia Parra No relationship to disclose Pelham Keahey No relationship to disclose Kathleen Schmeler Research Funding: Cepheid Patents, Royalties, Other Intellectual Property: UpToDate Mauricio Maza No relationship to disclose Philip Castle Honoraria: Roche, Cepheid Consulting or Advisory Role: Cepheid, GE Healthcare, Guided Therapeutics, ClearPath, Merck, Genticel, Teva, Inovio Pharmaceuticals, Hologic Rebecca R. Richards-Kortum Honoraria: Jannsen Global Services Research Funding: Merck Patents, Royalties, Other Intellectual Property: Patents

scholarly journals PI-Plat: a high-resolution image-based 3D reconstruction method to estimate growth dynamics of rice inflorescence traits

Plant Methods ◽  
2019 ◽  
Vol 15 (1) ◽  
Author(s):  
Jaspreet Sandhu ◽  
Feiyu Zhu ◽  
Puneet Paul ◽  
Tian Gao ◽  
Balpreet K. Dhatt ◽  
...  
Keyword(s):  
High Resolution ◽  
3D Reconstruction ◽  
Low Cost ◽  
Crop Improvement ◽  
Growth Dynamics ◽  
Superior Performance ◽  
Plant Phenotyping ◽  
Reconstruction Method ◽  
Color Intensity ◽  
Non Destructive

Abstract Background Recent advances in image-based plant phenotyping have improved our capability to study vegetative stage growth dynamics. However, more complex agronomic traits such as inflorescence architecture (IA), which predominantly contributes to grain crop yield are more challenging to quantify and hence are relatively less explored. Previous efforts to estimate inflorescence-related traits using image-based phenotyping have been limited to destructive end-point measurements. Development of non-destructive inflorescence phenotyping platforms could accelerate the discovery of the phenotypic variation with respect to inflorescence dynamics and mapping of the underlying genes regulating critical yield components. Results The major objective of this study is to evaluate post-fertilization development and growth dynamics of inflorescence at high spatial and temporal resolution in rice. For this, we developed the Panicle Imaging Platform (PI-Plat) to comprehend multi-dimensional features of IA in a non-destructive manner. We used 11 rice genotypes to capture multi-view images of primary panicle on weekly basis after the fertilization. These images were used to reconstruct a 3D point cloud of the panicle, which enabled us to extract digital traits such as voxel count and color intensity. We found that the voxel count of developing panicles is positively correlated with seed number and weight at maturity. The voxel count from developing panicles projected overall volumes that increased during the grain filling phase, wherein quantification of color intensity estimated the rate of panicle maturation. Our 3D based phenotyping solution showed superior performance compared to conventional 2D based approaches. Conclusions For harnessing the potential of the existing genetic resources, we need a comprehensive understanding of the genotype-to-phenotype relationship. Relatively low-cost sequencing platforms have facilitated high-throughput genotyping, while phenotyping, especially for complex traits, has posed major challenges for crop improvement. PI-Plat offers a low cost and high-resolution platform to phenotype inflorescence-related traits using 3D reconstruction-based approach. Further, the non-destructive nature of the platform facilitates analyses of the same panicle at multiple developmental time points, which can be utilized to explore the genetic variation for dynamic inflorescence traits in cereals.

scholarly journals PI-Plat: A high-resolution image-based 3D reconstruction method to estimate growth dynamics of rice inflorescence traits

2019 ◽  
Author(s):  
Jaspreet Sandhu ◽  
Feiyu Zhu ◽  
Puneet Paul ◽  
Tian Gao ◽  
Balpreet K. Dhatt ◽  
...  
Keyword(s):  
High Resolution ◽  
3D Reconstruction ◽  
Low Cost ◽  
Crop Improvement ◽  
Growth Dynamics ◽  
Superior Performance ◽  
Plant Phenotyping ◽  
Reconstruction Method ◽  
Color Intensity ◽  
Non Destructive

AbstractBackgroundRecent advances in image-based plant phenotyping have improved our capability to study vegetative stage growth dynamics. However, more complex agronomic traits such as inflorescence architecture (IA), which predominantly contributes to grain crop yield are more challenging to quantify and hence are relatively less explored. Previous efforts to estimate inflorescence-related traits using image-based phenotyping have been limited to destructive end-point measurements. Development of non-destructive inflorescence phenotyping platforms could accelerate the discovery of the phenotypic variation with respect to inflorescence dynamics and mapping of the underlying genes regulating critical yield components.ResultsThe major objective of this study is to evaluate post-fertilization development and growth dynamics of inflorescence at high spatial and temporal resolution in rice. For this, we developed the Panicle Imaging Platform (PI-Plat) to comprehend multi-dimensional features of IA in a non-destructive manner. We used 11 rice genotypes to capture multi-view images of primary panicle on weekly basis after the fertilization. These images were used to reconstruct a 3D point cloud of the panicle, which enabled us to extract digital traits such as voxel count and color intensity. We found that the voxel count of developing panicles is positively correlated with seed number and weight at maturity. The voxel count from developing panicles projected overall volumes that increased during the grain filling phase, wherein quantification of color intensity estimated the rate of panicle maturation. Our 3D based phenotyping solution showed superior performance compared to conventional 2D based approaches.ConclusionsFor harnessing the potential of the existing genetic resources, we need a comprehensive understanding of the genotype-to-phenotype relationship. Relatively low-cost sequencing platforms have facilitated high-throughput genotyping, while phenotyping, especially for complex traits, has posed major challenges for crop improvement. PI-Plat offers a low cost and high-resolution platform to phenotype inflorescence-related traits using 3D reconstruction-based approach. Further, the non-destructive nature of the platform facilitates analyses of the same panicle at multiple developmental time points, which can be utilized to explore the genetic variation for dynamic inflorescence traits in cereals.

A technique for protecting delicate specimens during processing

1989 ◽  
Vol 47 ◽  
pp. 982-983
Author(s):  
R.J. Mount ◽  
R.V. Harrison
Keyword(s):  
Basilar Membrane ◽  
Low Cost ◽  
Organ Of Corti ◽  
Region Of Interest ◽  
Sensory Epithelium ◽  
Physical Damage ◽  
Air Drying ◽  
Specimen Handling ◽  
Two Component

The sensory end organ of the ear, the organ of Corti, rests on a thin basilar membrane which lies between the bone of the central modiolus and the bony wall of the cochlea. In vivo, the organ of Corti is protected by the bony wall which totally surrounds it. In order to examine the sensory epithelium by scanning electron microscopy it is necessary to dissect away the protective bone and expose the region of interest (Fig. 1). This leaves the fragile organ of Corti susceptible to physical damage during subsequent handling. In our laboratory cochlear specimens, after dissection, are routinely prepared by the O-T- O-T-O technique, critical point dried and then lightly sputter coated with gold. This processing involves considerable specimen handling including several hours on a rotator during which the organ of Corti is at risk of being physically damaged. The following procedure uses low cost, readily available materials to hold the specimen during processing ,preventing physical damage while allowing an unhindered exchange of fluids.Following fixation, the cochlea is dehydrated to 70% ethanol then dissected under ethanol to prevent air drying. The holder is prepared by punching a hole in the flexible snap cap of a Wheaton vial with a paper hole punch. A small amount of two component epoxy putty is well mixed then pushed through the hole in the cap. The putty on the inner cap is formed into a “cup” to hold the specimen (Fig. 2), the putty on the outside is smoothed into a “button” to give good attachment even when the cap is flexed during handling (Fig. 3). The cap is submerged in the 70% ethanol, the bone at the base of the cochlea is seated into the cup and the sides of the cup squeezed with forceps to grip it (Fig.4). Several types of epoxy putty have been tried, most are either soluble in ethanol to some degree or do not set in ethanol. The only putty we find successful is “DUROtm MASTERMENDtm Epoxy Extra Strength Ribbon” (Loctite Corp., Cleveland, Ohio), this is a blue and yellow ribbon which is kneaded to form a green putty, it is available at many hardware stores.

scholarly journals Optimization of spectral-domain optical coherence tomography with a supercontinuum source for in vivo motion detection of low reflective outer hair cells in guinea pig cochleae

2021 ◽  
Author(s):  
Fumiaki Nin ◽  
Samuel Choi ◽  
Takeru Ota ◽  
Zhang Qi ◽  
Hiroshi Hibino
Keyword(s):  
Optical Coherence Tomography ◽  
High Resolution ◽  
Guinea Pig ◽  
Hair Cells ◽  
Sensory Epithelium ◽  
Outer Hair Cells ◽  
Acquisition Time ◽  
Total Acquisition Time ◽  
Sd Oct

AbstractSound evokes sub-nanoscale vibration within the sensory epithelium. The epithelium contains not only immotile cells but also contractile outer hair cells (OHCs) that actively shrink and elongate synchronously with the sound. However, the in vivo motion of OHCs has remained undetermined. The aim of this work is to perform high-resolution and -accuracy vibrometry in live guinea pigs with an SC-introduced spectral-domain optical coherence tomography system (SD-OCT). In this study, to reveal the effective contribution of SC source in the recording of the low reflective materials with the short total acquisition time, we compare the performances of the SC-introduced SD-OCT (SCSD-OCT) to that of the conventional SD-OCT. As inanimate comparison objects, we record a mirror, a piezo actuator, and glass windows. For the measurements in biological materials, we use in/ex vivo guinea pig cochleae. Our study achieved the optimization of a SD-OCT system for high-resolution in vivo vibrometry in the cochlear sensory epithelium, termed the organ of Corti, in mammalian cochlea. By introducing a supercontinuum (SC) light source and reducing the total acquisition time, we improve the axial resolution and overcome the difficulty in recording the low reflective material in the presence of biological noise. The high power of the SC source enables the system to achieve a spatial resolution of 1.72 ± 0.00 μm on a mirror and reducing the total acquisition time contributes to the high spatial accuracy of sub-nanoscale vibrometry. Our findings reveal the vibrations at the apical/basal region of OHCs and the extracellular matrix, basilar membrane.

scholarly journals Iron accumulation in the oculomotor nerve of the progressive supranuclear palsy brain

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Hansol Lee ◽  
Myung Jun Lee ◽  
Eun-Joo Kim ◽  
Gi Yeong Huh ◽  
Jae-Hyeok Lee ◽  
...  
Keyword(s):  
High Resolution ◽  
Progressive Supranuclear Palsy ◽  
Oculomotor Nerve ◽  
Iron Accumulation ◽  
Blue Staining ◽  
Normal Brain ◽  
Myelinated Fiber ◽  
Healthy Controls ◽  
Icp Ms

AbstractAbnormal iron accumulation around the substantia nigra (SN) is a diagnostic indicator of Parkinsonism. This study aimed to identify iron-related microarchitectural changes around the SN of brains with progressive supranuclear palsy (PSP) via postmortem validations and in vivo magnetic resonance imaging (MRI). 7 T high-resolution MRI was applied to two postmortem brain tissues, from one normal brain and one PSP brain. Histopathological examinations were performed to demonstrate the molecular origin of the high-resolution postmortem MRI findings, by using ferric iron staining, myelin staining, and two-dimensional laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS) imaging. In vivo iron-related MRI was performed on five healthy controls, five patients with Parkinson’s disease (PD), and five patients with PSP. In the postmortem examination, excessive iron deposition along the myelinated fiber at the anterior SN and third cranial nerve (oculomotor nerve) fascicles of the PSP brain was verified by LA-ICP-MS. This region corresponded to those with high R2* values and positive susceptibility from quantitative susceptibility mapping (QSM), but was less sensitive in Perls’ Prussian blue staining. In in vivo susceptibility-weighted imaging, hypointense pixels were observed in the region between the SN and red nucleus (RN) in patients with PSP, but not in healthy controls and patients with PD. R2* and QSM values of such region were significantly higher in patients with PSP compared to those in healthy controls and patients with PD as well (vs. healthy control: p = 0.008; vs. PD: p = 0.008). Thus, excessive iron accumulation along the myelinated fibers at the anterior SN and oculomotor nerve fascicles may be a pathological characteristic and crucial MR biomarker in a brain with PSP.

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