scholarly journals Nearshore Fish Species Richness and Species–Habitat Associations in the St. Clair–Detroit River System

Water ◽  
2021 ◽  
Vol 13 (12) ◽  
pp. 1616
Author(s):  
Corbin D. Hilling ◽  
Jason L. Fischer ◽  
Jason Ross ◽  
Taaja R. Tucker ◽  
Robin L. DeBruyne ◽  
...  
Keyword(s):  
Species Richness ◽  
Fish Species ◽  
Habitat Restoration ◽  
Aquatic Macrophyte ◽  
River System ◽  
Habitat Associations ◽  
Individual Species ◽  
Theoretic Approach ◽  
Detroit River ◽  
Habitat Variables

Shallow water riparian zones of large rivers provide important habitat for fishes, but anthropogenic influences have reduced the availability and quality of these habitats. In the St. Clair–Detroit River System, a Laurentian Great Lakes connecting channel, losses of riparian habitat contributed to impairment of fish populations and their habitats. We conducted a seine survey annually from 2013 to 2019 at ten sites in the St. Clair and Detroit rivers to assess riparian fish communities, and to identify habitat attributes associated with fish species richness and catches of common species. We captured a total of 38,451 fish representing 60 species, with emerald shiner Notropis atherinoides composing the largest portion of the catch. We used an information-theoretic approach to assess the associations between species richness and catches of 33 species with habitat variables (substrate, shoreline vegetation types, and aquatic macrophyte richness). Sand, cobble, and algal substrates and shoreline vegetation were important predictors of species richness based on a multimodel inference approach. However, habitat associations of individual species varied. This work identified manageable habitat variables associated with species richness, while identifying potential tradeoffs for individual species. Further, this work provides baselines for development and evaluation of fish community and shoreline habitat restoration goals.

scholarly journals Impact of the Low Head Dam/Barrage on Fisheries – A Case Study of Giri River of Yamuna Basin (India)

2015 ◽  
Vol 17 (2) ◽  
pp. 119-138
Author(s):  
Harcharan Singh Rumana ◽  
Veliachamy Jeeva ◽  
Sudhir Kumar
Keyword(s):  
Species Richness ◽  
Relative Abundance ◽  
Fish Species ◽  
Habitat Heterogeneity ◽  
Diversity Index ◽  
River System ◽  
Western Himalayas ◽  
Diversity Pattern ◽  
Low Head ◽  
Longitudinal Stretch

Abstract Shannon’s diversity index H’ = pi log2 pi was calculated for 16 fish species. The index was resolved into its components, species richness and relative abundance, to determine which components played a larger role in the determination of diversity pattern. Changes in diversity were correlated with species richness (r), habitat heterogeneity, and hydrological regimes in a longitudinal stretch of 35 km along the river Giri, a major tributary of the Yamuna River system, in Western Himalayas. Abundance differs with change in habitat structures, habitat preference of fish species and water regimes. The decrease in diversity in the lower stretch of about 3-4 km upstream of the barrage was found to be associated with habitat fragmentation and as well as d/s with loss of biotic integrity of aquatic ecosystem due to water scarcity. Species richness was found to be maximum at upper and middle reaches (elevation 650-800 m, msl) of the river, whereas it was low in lower reaches. Change in water chemistry was also noticed at Jatan barrage-low head dam due to impoundment of river water. It is inferred that the regulation of water has an impact on species richness and relative abundance, and on habitat heterogeneity which has decreased due to the change in environmental condition.

A spatial autocorrelative model for targeting stream restoration to benefit sensitive nongame fishes

2010 ◽  
Vol 67 (1) ◽  
pp. 165-176 ◽  
Author(s):  
Matthew W. Diebel ◽  
Jeffrey T. Maxted ◽  
Olaf P. Jensen ◽  
M. Jake Vander Zanden
Keyword(s):  
Fish Species ◽  
Stream Restoration ◽  
Habitat Restoration ◽  
Dispersal Limitation ◽  
Habitat Characteristics ◽  
Individual Species ◽  
Suitable Habitat ◽  
Stream Network ◽  
Dispersal Capability ◽  
Spatial Autoregressive

Stream restoration projects often aim to benefit aquatic biota and frequently use the reappearance of sensitive nongame fish species as a measure of restoration success. However, mitigation of human influence will only benefit a given species where static habitat characteristics are suitable for that species and where potential source populations are within the range of their dispersal capability. We used spatial autoregressive habitat models to simulate the effect of watershed-scale stream restoration on the distributions of six sediment-sensitive fish species in Wisconsin, USA, streams. These models consider the probability of occurrence of a species in a given stream segment as a function of characteristics of that segment as well as the characteristics of neighboring segments. Populations of individual species are predicted to be restorable in 0.2%–2.8% of Wisconsin streams. Streams with high restoration potential for one or more species generally have high watershed human land use but are also closely connected through the stream network to relatively undisturbed streams. These results indicate that habitat restoration for nongame stream fishes will be most effective when it builds onto existing suitable habitat because of both dispersal limitation and spatial autocorrelation of habitat characteristics.

scholarly journals Habitat Associations, Relative Abundance, and Species Richness of Autumn Landbird Migrants in Southwestern Idaho

The Condor ◽  
2004 ◽  
Vol 106 (3) ◽  
pp. 549-566 ◽  
Author(s):  
Jay D. Carlisle ◽  
Sarah L. Stock ◽  
Gregory S. Kaltenecker ◽  
David L. Swanson
Keyword(s):  
Species Richness ◽  
Relative Abundance ◽  
Habitat Associations ◽  
Neotropical Migrants ◽  
Individual Species ◽  
Conifer Forest ◽  
Community Similarity ◽  
Migration Strategies ◽  
Forest Mountain ◽  
Count Surveys

AbstractWe used count surveys and mist-net captures to compare habitat associations, relative abundance, species richness, and community similarity of migrant landbirds among four major habitats in the Boise Foothills of southwestern Idaho. Count surveys were conducted from August through October 1997–2000 in conifer forest, mountain shrubland, shrubsteppe, and riparian shrubland. We compared bird detections among habitats for all birds pooled, individual species, and three migration strategies: Neotropical, temperate, and resident (including irruptive migrants). Mountain shrubland supported the highest numbers of temperate migrants; both mountain shrubland and riparian shrubland had the highest numbers of Neotropical migrants; and conifer forest had the highest numbers of residents. Species richness was highest in riparian shrubland and lowest in shrubsteppe, whereas diversity and evenness were highest in conifer forest and mountain shrubland. Mist netting was conducted from mid-July to mid-October in two habitats: mountain shrubland (1997– 2002) and riparian shrubland (1998–1999). Captures (adjusted for effort) were compared among habitats in 1998–1999 and were similar for temperate migrants, whereas mountain shrubland had higher abundance of Neotropical migrants and riparian shrubland had higher abundance of irruptive migrants. Richness, diversity, and evenness were similar and there was high community similarity between mountain shrub and riparian shrubland habitats. These results emphasize the importance of montane habitats, especially deciduous shrub communities, to migrants in the Intermountain West.Asociaciones de Hábitat, Abundancia Relativa y Riqueza de Especies de Aves Migratorias Terrestres de Otoño en el Sudoeste de IdahoResumen. Empleamos muestreos por conteos y capturas con redes de niebla para comparar asociaciones de hábitat, abundancia relativa, riqueza de especies, y similitud entre comunidades de aves migratorias terrestres, presentes en los cuatro hábitats principales de piedemonte de Boise en el sudoeste de Idaho. Los conteos fueron realizados entre agosto hasta octubre de los años 1997–2000 en bosque de coníferas, hábitat de matorral de montaña, matorral de estepa, y en matorral ripario. Comparamos la detección de aves entre hábitats para todas las especies juntas, para cada especie por separado y para tres categorías de estrategia de migración: especies migratorias neotropicales, especies migratorias de la zona templada y especies residentes (incluyendo migrantes irruptivas). El hábitat de matorral de montaña tuvo los números más altos de especies migratorias templadas. Los hábitats de matorral de montaña y matorral ripario tuvieron los números más altos de especies migratorias neotropicales y el bosque de coníferas tuvo los números más altos de especies residentes. La riqueza de especies fue mayor en el matorral ripario y menor en el matorral de estepa, mientras que la diversidad y la equidad fueron mayores en bosque de coníferas y matorral de montaña. El muestreo con redes de niebla se llevó a cabo desde mediados de julio hasta mediados de octubre en dos hábitats: matorral de montaña (1997–2002) y matorral ripario (1998–1999). Las capturas (ajustadas por esfuerzo de muestreo) fueron comparadas entre hábitats en 1998–1999. La abundancia de las especies migratorias de la zona templada fue similar entre hábitats, mientras que el hábitat de matorral de montaña tuvo la mayor abundancia de especies migratorias neotropicales y el matorral ripario tuvo la mayor abundancia de especies migratorias irruptivas. La riqueza, la diversidad y la equidad fueron similares entre hábitats y las comunidades de los hábitats de matorral de montaña y matorral ripario presentaron alta similitud. Estos resultados enfatizan la importancia de los hábitats de montaña, especialmente la de los hábitats de comunidades arbustivas deciduas, para las especies migratorias en el oeste intermontano.

Linking fish and crustacean taxonomic composition with seasonal contrasts in the soft-bottom intertidal zone

2020 ◽  
Author(s):  
M. A. Gondal ◽  
S. Iqbal ◽  
U. Atique ◽  
N. U. Saher ◽  
N. A. Qureshi ◽  
...  
Keyword(s):  
Species Richness ◽  
Water Temperature ◽  
Fish Species ◽  
Diversity Index ◽  
Taxonomic Composition ◽  
Primary Objective ◽  
Negative Effect ◽  
Fish Species Composition ◽  
One Year ◽  
Sw Monsoon

Abstract The primary objective of this study was to investigate the seasonal fish and crustacean variations concerning taxonomic composition, species richness, and diversity in sandy beach habitat. For this purpose, we investigated the Sonmiani Hor lagoon area during four distinct seasons, i.e., northeast (NE) monsoon, pre-monsoon, south-west (SW) monsoon, and post-monsoon for one year. During each haul, the net was pulled about 100m along the beach in 0.5m depth. The results showed a strong linear correlation between the diversity index and equitability in fishes (r = 0.978). The diversity index was strong negatively correlated with the abundance and biomass (r = -0.978, -0.972, respectively). The physical attributes like sea surface water temperature and salinity showed a strong negative effect on species assemblages (r = -0.981 and -0.943, respectively). The mean air and water temperature illustrated approximately 3°C difference during NE and pre-monsoon seasons. However, salinity, pH, and electrical conductivity did not show any significant seasonal variabilities. Under the ecological indices, the fish species displayed higher diversity (H’ = 3.19) during SW monsoon, whereas the lowest diversity was observed during pre-monsoon (H’ = 1.58). The equitability and species richness, however, remained more noticeable during SW monsoon (J’ = 0.81). The total number of individuals of fish and crustaceans reached 4799 with 3813 fish individuals and 986 individuals of crustaceans. A total of 27 families of fish while five crustacean families comprising of 30 genera and 38 fish species while ten genera and 17 species of crustaceans were recorded. Liza subviridis displayed the highest abundance among the sampled fish species. In conclusion, fish species constituted a significant part of the coastal fauna in the study area. The seasonal variations displayed distinct variations in fish species composition and diversity.

scholarly journals Simultaneous absolute quantification and sequencing of fish environmental DNA in a mesocosm by quantitative sequencing technique

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Tatsuhiko Hoshino ◽  
Ryohei Nakao ◽  
Hideyuki Doi ◽  
Toshifumi Minamoto
Keyword(s):  
Fish Species ◽  
High Throughput Sequencing ◽  
Correlation Coefficients ◽  
Environmental Dna ◽  
Digital Pcr ◽  
Absolute Quantification ◽  
Taqman Probe ◽  
Individual Species ◽  
Natural Environments ◽  
Target Sequence

AbstractThe combination of high-throughput sequencing technology and environmental DNA (eDNA) analysis has the potential to be a powerful tool for comprehensive, non-invasive monitoring of species in the environment. To understand the correlation between the abundance of eDNA and that of species in natural environments, we have to obtain quantitative eDNA data, usually via individual assays for each species. The recently developed quantitative sequencing (qSeq) technique enables simultaneous phylogenetic identification and quantification of individual species by counting random tags added to the 5′ end of the target sequence during the first DNA synthesis. Here, we applied qSeq to eDNA analysis to test its effectiveness in biodiversity monitoring. eDNA was extracted from water samples taken over 4 days from aquaria containing five fish species (Hemigrammocypris neglectus, Candidia temminckii, Oryzias latipes, Rhinogobius flumineus, and Misgurnus anguillicaudatus), and quantified by qSeq and microfluidic digital PCR (dPCR) using a TaqMan probe. The eDNA abundance quantified by qSeq was consistent with that quantified by dPCR for each fish species at each sampling time. The correlation coefficients between qSeq and dPCR were 0.643, 0.859, and 0.786 for H. neglectus, O. latipes, and M. anguillicaudatus, respectively, indicating that qSeq accurately quantifies fish eDNA.

Patterns of fish species richness in the Seine River basin, France

Hydrobiologia ◽  
1993 ◽  
Vol 259 (3) ◽  
pp. 157-167 ◽  
Author(s):  
Thierry Oberdorff ◽  
Eric Guilbert ◽  
Jean-Claude Lucchetta
Keyword(s):  
Species Richness ◽  
River Basin ◽  
Fish Species ◽  
Seine River ◽  
Seine River Basin

ORIGINAL ARTICLE: Fish species richness decreases with salinity in tropical coastal lagoons

2006 ◽  
Vol 34 (1) ◽  
pp. 52-61 ◽  
Author(s):  
Atahualpa Sosa-López ◽  
David Mouillot ◽  
Julia Ramos-Miranda ◽  
Domingo Flores-Hernandez ◽  
Thang Do Chi
Keyword(s):  
Species Richness ◽  
Fish Species ◽  
Coastal Lagoons

Habitat use by stream-breeding frogs in south-east Sulawesi, with some preliminary observations on community organization

2004 ◽  
Vol 20 (4) ◽  
pp. 439-448 ◽  
Author(s):  
Graeme R. Gillespie ◽  
David Lockie ◽  
Michael P. Scroggie ◽  
Djoko T. Iskandar
Keyword(s):  
Species Richness ◽  
Habitat Use ◽  
Community Organization ◽  
Habitat Associations ◽  
Habitat Partitioning ◽  
Tropical Stream ◽  
Frog Species ◽  
Oviposition Sites ◽  
Selection Of ◽  
Spatial Habitat

The habitat associations of stream-breeding frogs were examined along a series of stream transects on Buton Island in south-east Sulawesi, Indonesia. Of the eight frog species located along streams, four were observed breeding in stream habitats. We examined spatial habitat partitioning among these species. Three of the four species were found to be associated with a non-random selection of the available perch sites. Strong partitioning between species in habitat associations was found; partitioning of the available habitat space was primarily associated with differences in proximity to stream features, and in the height of perch sites. General observations indicated that oviposition sites of most species were associated with the microhabitats in which the adult frogs were found. All four stream-breeding species appear to have synchronous breeding phenologies and the spatial relationships of these species within the habitat space appear to reflect partitioning of calling sites and oviposition sites. The stream-breeding frog community in this region of Sulawesi has much lower species richness and less specialized habitat use compared with other tropical stream-breeding frog communities in the region.

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