Family Legacy: Depicting Diversity-Elevation Relationships of Tropical Tree Communities

Unveiling the ecological processes driving diversity and its relationship to the environment remains a central goal in ecological studies. Here, we investigated the elevation effect on plant diversity patterns of tropical rainforests, using beta-, phylogenetic and alpha diversities. To do so, we compiled a forest dataset with 22,236 trees (DBH ≥ 4.8 cm) from 17 plots of 1 ha each along an elevational gradient (0 – 1,200 m a.s.l) in the Atlantic Forest of Southeastern Brazil. We found high phylogenetic and species rates of turnover – beta-diversity - along the elevational gradient. Alpha phylodiversity showed a monotonic decrease with increasing elevation, including or not fern species (a distantly related clade usually ignored in tropical ecology studies), while the phylogenetic structure was highly affected by the inclusion of fern trees. Species diversity showed a unimodal pattern for the whole community, and different patterns for the richest families. The diversity pattern of the whole community emerges from differences among species distribution of the richest families, while phylogenetic diversity seems to be gradually filtered by elevation. At intermediate elevations, higher species diversification within families might have led to different strategies and cooccurrence in tropical rainforests. We also showed that intricate effects of elevation in species assemblages can be better assessed using both ecological and evolutionary approaches, stressing the importance of species selection in diversity analyzes. Finally, we demonstrate that elevation has different effects on the species distributions of the richest families and warn that these differences should be considered in conservation planning.

Nutraceutical Content and Genetic Diversity Share a Common Pattern in New Pomegranate Genotypes

The nutraceutical value of pomegranate in the treatment of many diseases is well-documented and is linked to its richness in phenolic compounds. This study aims to evaluate the nutraceutical and genetic diversity of novel pomegranate genotypes (G1–G5) in comparison to leading commercial pomegranate varieties, i.e., ‘Wonderful’, ‘Primosole’, ‘Dente di Cavallo’ and ‘Valenciana’. Morphometric measurements were carried out on fruits, accompanied by chemical characterization (total phenolic content, antioxidant activity, carbohydrates and minerals) and the development of four new polymorphic SSR markers involved in the flavonoid pathway. The cultivars displayed a marked variability in the weight and shape of the fruits, as well as in the weight of the arils and juice yield. The highest level of total phenolic content and antioxidant activity was found in ‘Wonderful’ and G4, while the lowest was in ‘Dente di Cavallo’. Furthermore, the results showed that pomegranate juice is an excellent source of minerals, especially potassium, which plays a key role in organ functioning. The new flavonoid-related markers effectively differentiated the cultivars with the same diversity pattern as morpho-chemical characterization, so the SSRs developed in the present study can be used as a rapid tool for the identification of pomegranate cultivars with relevant nutraceutical traits, such as the new genotypes investigated.

Archaeal and Bacterial Diversity and Distribution Patterns in Mediterranean-Climate Vernal Pools of Mexico and the Western USA

Biogeographic patterns in microorganisms are poorly understood, despite the importance of microbial communities for a range of ecosystem processes. Our knowledge of microbial ecology and biogeography is particularly deficient in rare and threatened ecosystems. We tested for three ecological patterns in microbial community composition within ephemeral wetlands—vernal pools—located across Baja California (Mexico) and California (USA): (1) habitat filtering; (2) a latitudinal diversity gradient; and (3) distance decay in community composition. Paired water and soil samples were collected along a latitudinal transect of vernal pools, and bacterial and archaeal communities were characterized using 16S rDNA sequencing. We identified two main microbial communities, with one community present in the soil matrix that included archaeal and bacterial soil taxa, and another community present in the overlying water that was dominated by common freshwater bacterial taxa. Aquatic microbial communities were more diverse in the north, and displayed a significant but inverted latitudinal diversity pattern. Aquatic communities also exhibited a significant distance-decay pattern, with geographic proximity, and precipitation explaining part of the community variation. Collectively these results indicate greater sensitivity to spatial and environmental variation in vernal pool aquatic microbial communities than in soil microbial communities. We conclude that vernal pool aquatic microbial communities can display distribution patterns similar to those exhibited by larger organisms, but differ in some key aspects, such as the latitudinal gradient in diversity.

Nutraceutical Content and Genetic Diversity Share a Common Pattern in New Pomegranate Genotypes

The nutraceutical value of pomegranate in the treatment of many neoplastic, cardiovascular, viral, inflammatory, metabolic, microbial, intestinal, reproductive and skin diseases is well-documented and is linked to its richness in phenolic compounds. This study aims to evaluate nutraceutical and genetic diversity of novel pomegranate genotypes (G1-G5) in comparison to leading commercial pomegranate varieties i.e. ‘Wonderful’, ‘Primosole’, ‘Dente di Cavallo’ and ‘Valenciana’. Morphometric measurements were carried out on fruits, accompanied by chemical characterization and the development of four new polymorphic SSR markers involved in the flavonoid pathway. The cultivars displayed a marked variability in the weight and shape of fruits, as well as in the weight of arils and juice yield. The highest level of total phenolic content and antioxidant activity was found in ‘Wonderful’ and G4, while the lowest was in ‘Dente di Cavallo’. Furthermore, the results showed that the pomegranate juice, is an excellent source of minerals, especially potassium, which plays a key role in organ functioning. The new flavonoid-related markers effectively differentiated the cultivars with the same diversity pattern as morpho-chemical characterization, so the SSRs developed in the present study can be used as a rapid tool for the identification of pomegranate cultivars with relevant nutraceutical traits.

Why can China maintain a high crop diversity? A spatial-temporal dynamic analysis

Crop diversity is crucial for producing more food and nutrition in the crowded planet and achieving agricultural sustainable development, and thus it is a hot topic in shaping policies aimed at ensuring food security. Many studies have revealed that enhanced crop diversity can benefit crop productivity. However, research on how to maintain a relatively high crop diversity at regional and national scales remains limited. This study attempts to examine the underlying mechanisms of crop diversity changes in China and eventually answer why China can maintain a high crop diversity from the spatial-temporal perspective. To achieve this end, the county level crop area dataset for the period of 1980–2014 was compiled and used to quantify the spatiotemporal dynamics of crop diversity in China. The result reveals that the China’s crop diversity trended upward over past 35 years, evidenced by more than 7 major crops at national level and 4 major crops at county level having undergone massive planting process to maintain a high crop diversity. Spatially, the crop diversity increased in more than two-thirds of the counties, and its hotspots moved gradually to the south-west mountainous area. The natural factor of slope and the social factor of population density contributed to shape the crop diversity pattern in global effects. In contrast, the irrigation degree, elevation of cropland, mean annual temperature and precipitation affected the spatially non-stationary distribution of crop diversity at the local level. On the whole, the maintenance of a higher crop diversity in China not only was limited by natural conditions, but also subject to adopt the multi-cropping systems strategic choice for the country to agricultural conditions. We argued that crop diversity can be an indicator to draw agricultural zoning, and increasing crop diversity should be recognized as a policy tool to implement agricultural sustainable development strategy.

Zooplankton diversity monitoring strategy for the urban coastal region using metabarcoding analysis

Marine ecosystems in urban coastal areas are exposed to many risks due to human activity. Thus, long-term and continuous monitoring of zooplankton diversity is necessary. High-throughput DNA metabarcoding has gained recognition as an efficient and highly sensitive approach to accurately describing the species diversity of marine zooplankton assemblages. In this study, we collected 30 zooplankton samples at about 2-week intervals for 1 year. Zooplankton diversity showing a typical four season pattern. Of the “total” and “common” zooplankton, we assigned 267 and 64 taxa. The cluster structure and seasonal diversity pattern were rough when only the “common” zooplankton was used. Our study examined how to maximize the benefits of metabarcoding for monitoring zooplankton diversity in urban coastal areas. The results suggest that to take full advantage of metabarcoding when monitoring a zooplankton community, it is necessary to carefully investigate potential ecosystem threats (non-indigenous species) through sufficient curation rather than disregarding low-abundance operational taxonomic units.

Historical Dynamics of Semi-Humid Evergreen Forests in the Southeast Himalaya Biodiversity Hotspot: A Case Study of the Quercus franchetii Complex (Fagaceae)

The Oligocene and Miocene are key periods in the formation of the modern topography and flora of East Asian and Indo-China. However, it is unclear how geological and climatic factors contributed to the high endemism and species richness of this region. The Quercus franchetii complex is widespread in the southeast Himalaya fringe and northern Indo-China with a long evolutionary history. It provides a unique proxy for studying the diversity pattern of evergreen woody lineages in this region since the Oligocene. In this study, we combined chloroplast (cpDNA) sequences, nuclear microsatellite loci (nSSRs), and species distribution modeling (SDM) to investigate the impacts of geological events on genetic diversity of the Q. franchetii complex. The results showed that the initial cpDNA haplotype divergence was estimated to occur during the middle Oligocene (30.7 Ma), which might have been raised by the tectonic activity at this episode to the Miocene. The nSSR results revealed two major groups of populations, the central Yunnan-Guizhou plateau (YGP) group and the peripheral distribution group when K = 2, in responding to the rapid YGP uplift during the late Miocene, which restricted gene flow between the populations in core and marginal areas. SDM analysis indicated that the distribution ranges of the Q. franchetii complex expanded northwards after the last glacial maximum, but the core distribution range in YGP was stable. Our results showed that the divergence of Q. franchetii complex is rooted in the mid-Oligocene. The early geological events during the Oligocene, and the late Miocene may play key roles to restrict seed-mediated gene flow among regions, but the pollen-mediated gene flow was less impacted. The uplifts of the YGP and the climate since LGM subsequently boosted the divergence of the populations in core and marginal areas.