scholarly journals Methods and Trends in Information Retrieval in Big Data Genomic Research

This paper described information retrieval (IR) and the common methods of finding, extracting, and mining information in genomic research through text mining, and natural language processing (NLP). There was a surge of genomic information from the different literature and the production of genome datasets that catapulted the development of several tools for analyzing and presenting new found knowledge in the biomedical and genome research. This paper presented the recent research trends, survey, reviews, experiments, and concepts in information retrieval applied to text, images and object features in big data genomic research. The method used is exploratory survey research in IR uses in genomic research that presents the concepts, methods, evaluation results and next steps described by the key researchers.

2019 ◽  
Vol 53 (2) ◽  
pp. 97-97
Author(s):  
Qingyao Ai

Information Retrieval (IR) concerns about the structure, analysis, organization, storage, and retrieval of information. Among different retrieval models proposed in the past decades, generative retrieval models, especially those under the statistical probabilistic framework, are one of the most popular techniques that have been widely applied to Information Retrieval problems. While they are famous for their well-grounded theory and good empirical performance in text retrieval, their applications in IR are often limited by their complexity and low extendability in the modeling of high-dimensional information. Recently, advances in deep learning techniques provide new opportunities for representation learning and generative models for information retrieval. In contrast to statistical models, neural models have much more flexibility because they model information and data correlation in latent spaces without explicitly relying on any prior knowledge. Previous studies on pattern recognition and natural language processing have shown that semantically meaningful representations of text, images, and many types of information can be acquired with neural models through supervised or unsupervised training. Nonetheless, the effectiveness of neural models for information retrieval is mostly unexplored. In this thesis, we study how to develop new generative models and representation learning frameworks with neural models for information retrieval. Specifically, our contributions include three main components: (1) Theoretical Analysis : We present the first theoretical analysis and adaptation of existing neural embedding models for ad-hoc retrieval tasks; (2) Design Practice : Based on our experience and knowledge, we show how to design an embedding-based neural generative model for practical information retrieval tasks such as personalized product search; And (3) Generic Framework : We further generalize our proposed neural generative framework for complicated heterogeneous information retrieval scenarios that concern text, images, knowledge entities, and their relationships. Empirical results show that the proposed neural generative framework can effectively learn information representations and construct retrieval models that outperform the state-of-the-art systems in a variety of IR tasks.


2007 ◽  
Vol 2 (3) ◽  
pp. 9-14
Author(s):  
Jacinth Salome ◽  
◽  
Ramya Ravishankar ◽  

2017 ◽  
Vol 9 (1) ◽  
pp. 19-24 ◽  
Author(s):  
David Domarco ◽  
Ni Made Satvika Iswari

Technology development has affected many areas of life, especially the entertainment field. One of the fastest growing entertainment industry is anime. Anime has evolved as a trend and a hobby, especially for the population in the regions of Asia. The number of anime fans grow every year and trying to dig up as much information about their favorite anime. Therefore, a chatbot application was developed in this study as anime information retrieval media using regular expression pattern matching method. This application is intended to facilitate the anime fans in searching for information about the anime they like. By using this application, user can gain a convenience and interactive anime data retrieval that can’t be found when searching for information via search engines. Chatbot application has successfully met the standards of information retrieval engine with a very good results, the value of 72% precision and 100% recall showing the harmonic mean of 83.7%. As the application of hedonic, chatbot already influencing Behavioral Intention to Use by 83% and Immersion by 82%. Index Terms—anime, chatbot, information retrieval, Natural Language Processing (NLP), Regular Expression Pattern Matching


Author(s):  
Radha Guha

Background:: In the era of information overload it is very difficult for a human reader to make sense of the vast information available in the internet quickly. Even for a specific domain like college or university website it may be difficult for a user to browse through all the links to get the relevant answers quickly. Objective:: In this scenario, design of a chat-bot which can answer questions related to college information and compare between colleges will be very useful and novel. Methods:: In this paper a novel conversational interface chat-bot application with information retrieval and text summariza-tion skill is designed and implemented. Firstly this chat-bot has a simple dialog skill when it can understand the user query intent, it responds from the stored collection of answers. Secondly for unknown queries, this chat-bot can search the internet and then perform text summarization using advanced techniques of natural language processing (NLP) and text mining (TM). Results:: The advancement of NLP capability of information retrieval and text summarization using machine learning tech-niques of Latent Semantic Analysis(LSI), Latent Dirichlet Allocation (LDA), Word2Vec, Global Vector (GloVe) and Tex-tRank are reviewed and compared in this paper first before implementing them for the chat-bot design. This chat-bot im-proves user experience tremendously by getting answers to specific queries concisely which takes less time than to read the entire document. Students, parents and faculty can get the answers for variety of information like admission criteria, fees, course offerings, notice board, attendance, grades, placements, faculty profile, research papers and patents etc. more effi-ciently. Conclusion:: The purpose of this paper was to follow the advancement in NLP technologies and implement them in a novel application.


2021 ◽  
Vol 55 (1) ◽  
pp. 1-2
Author(s):  
Bhaskar Mitra

Neural networks with deep architectures have demonstrated significant performance improvements in computer vision, speech recognition, and natural language processing. The challenges in information retrieval (IR), however, are different from these other application areas. A common form of IR involves ranking of documents---or short passages---in response to keyword-based queries. Effective IR systems must deal with query-document vocabulary mismatch problem, by modeling relationships between different query and document terms and how they indicate relevance. Models should also consider lexical matches when the query contains rare terms---such as a person's name or a product model number---not seen during training, and to avoid retrieving semantically related but irrelevant results. In many real-life IR tasks, the retrieval involves extremely large collections---such as the document index of a commercial Web search engine---containing billions of documents. Efficient IR methods should take advantage of specialized IR data structures, such as inverted index, to efficiently retrieve from large collections. Given an information need, the IR system also mediates how much exposure an information artifact receives by deciding whether it should be displayed, and where it should be positioned, among other results. Exposure-aware IR systems may optimize for additional objectives, besides relevance, such as parity of exposure for retrieved items and content publishers. In this thesis, we present novel neural architectures and methods motivated by the specific needs and challenges of IR tasks. We ground our contributions with a detailed survey of the growing body of neural IR literature [Mitra and Craswell, 2018]. Our key contribution towards improving the effectiveness of deep ranking models is developing the Duet principle [Mitra et al., 2017] which emphasizes the importance of incorporating evidence based on both patterns of exact term matches and similarities between learned latent representations of query and document. To efficiently retrieve from large collections, we develop a framework to incorporate query term independence [Mitra et al., 2019] into any arbitrary deep model that enables large-scale precomputation and the use of inverted index for fast retrieval. In the context of stochastic ranking, we further develop optimization strategies for exposure-based objectives [Diaz et al., 2020]. Finally, this dissertation also summarizes our contributions towards benchmarking neural IR models in the presence of large training datasets [Craswell et al., 2019] and explores the application of neural methods to other IR tasks, such as query auto-completion.


Author(s):  
Zahra Mousavi ◽  
Heshaam Faili

Nowadays, wordnets are extensively used as a major resource in natural language processing and information retrieval tasks. Therefore, the accuracy of wordnets has a direct influence on the performance of the involved applications. This paper presents a fully-automated method for extending a previously developed Persian wordnet to cover more comprehensive and accurate verbal entries. At first, by using a bilingual dictionary, some Persian verbs are linked to Princeton WordNet synsets. A feature set related to the semantic behavior of compound verbs as the majority of Persian verbs is proposed. This feature set is employed in a supervised classification system to select the proper links for inclusion in the wordnet. We also benefit from a pre-existing Persian wordnet, FarsNet, and a similarity-based method to produce a training set. This is the largest automatically developed Persian wordnet with more than 27,000 words, 28,000 PWN synsets and 67,000 word-sense pairs that substantially outperforms the previous Persian wordnet with about 16,000 words, 22,000 PWN synsets and 38,000 word-sense pairs.


2019 ◽  
Vol 53 (2) ◽  
pp. 3-10
Author(s):  
Muthu Kumar Chandrasekaran ◽  
Philipp Mayr

The 4 th joint BIRNDL workshop was held at the 42nd ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR 2019) in Paris, France. BIRNDL 2019 intended to stimulate IR researchers and digital library professionals to elaborate on new approaches in natural language processing, information retrieval, scientometrics, and recommendation techniques that can advance the state-of-the-art in scholarly document understanding, analysis, and retrieval at scale. The workshop incorporated different paper sessions and the 5 th edition of the CL-SciSumm Shared Task.


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