Feature Extraction Approach for Mass Spectrometry Imaging Data Using Non-negative Matrix Factorization

Xing-Chuang XIONG; Xiang FANG; Zheng OUYANG; You JIANG; Ze-Jian HUANG; Yu-Kui ZHANG

doi:10.3724/sp.j.1096.2012.11209

Feature Extraction Approach for Mass Spectrometry Imaging Data Using Non-negative Matrix Factorization

CHINESE JOURNAL OF ANALYTICAL CHEMISTRY (CHINESE VERSION) ◽

10.3724/sp.j.1096.2012.11209 ◽

2012 ◽

Vol 40 (5) ◽

pp. 663

Author(s):

Xing-Chuang XIONG ◽

Xiang FANG ◽

Zheng OUYANG ◽

You JIANG ◽

Ze-Jian HUANG ◽

...

Keyword(s):

Mass Spectrometry ◽

Feature Extraction ◽

Matrix Factorization ◽

Mass Spectrometry Imaging ◽

Imaging Data ◽

Non Negative Matrix Factorization

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Feature Extraction Approach for Mass Spectrometry Imaging Data Using Non-negative Matrix Factorization

Chinese Journal of Analytical Chemistry ◽

10.1016/s1872-2040(11)60544-6 ◽

2012 ◽

Vol 40 (5) ◽

pp. 663-669 ◽

Cited By ~ 10

Author(s):

Xing-Chuang XIONG ◽

Xiang FANG ◽

Zheng OUYANG ◽

You JIANG ◽

Ze-Jian HUANG ◽

...

Keyword(s):

Mass Spectrometry ◽

Feature Extraction ◽

Matrix Factorization ◽

Mass Spectrometry Imaging ◽

Imaging Data ◽

Non Negative Matrix Factorization

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A Mathematical Comparison of Non‐negative Matrix Factorization‐Related Methods with Practical Implications for the Analysis of Mass Spectrometry Imaging Data

Rapid Communications in Mass Spectrometry ◽

10.1002/rcm.9181 ◽

2021 ◽

Author(s):

Melanie Nijs ◽

Tina Smets ◽

Etienne Waelkens ◽

Bart De Moor

Keyword(s):

Mass Spectrometry ◽

Matrix Factorization ◽

Mass Spectrometry Imaging ◽

Imaging Data ◽

Practical Implications ◽

Non Negative Matrix Factorization

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Whole Reproductive System Non-Negative Matrix Factorization Mass Spectrometry Imaging of an Early-Stage Ovarian Cancer Mouse Model

PLoS ONE ◽

10.1371/journal.pone.0154837 ◽

2016 ◽

Vol 11 (5) ◽

pp. e0154837 ◽

Cited By ~ 14

Author(s):

Martin R. L. Paine ◽

Jaeyeon Kim ◽

Rachel V. Bennett ◽

R. Mitchell Parry ◽

David A. Gaul ◽

...

Keyword(s):

Mass Spectrometry ◽

Ovarian Cancer ◽

Mouse Model ◽

Reproductive System ◽

Matrix Factorization ◽

Mass Spectrometry Imaging ◽

Early Stage ◽

Early Stage Ovarian Cancer ◽

Non Negative Matrix Factorization

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Non-negative matrix factorization-based time-frequency feature extraction of voice signal for Parkinson's disease prediction

Computer Speech & Language ◽

10.1016/j.csl.2021.101216 ◽

2021 ◽

pp. 101216

Author(s):

Biswajit Karan ◽

Sitanshu Sekhar Sahu ◽

Juan Rafael Orozco-Arroyave ◽

Kartik Mahto

Keyword(s):

Parkinson’S Disease ◽

Parkinson's Disease ◽

Feature Extraction ◽

Matrix Factorization ◽

Disease Prediction ◽

Time Frequency ◽

Voice Signal ◽

Frequency Feature ◽

Non Negative Matrix Factorization

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Solution space of non negative matrix factorization and consideration of feature extraction on web application attacks

2014 International Conference on Information Science, Electronics and Electrical Engineering ◽

10.1109/infoseee.2014.6947797 ◽

2014 ◽

Author(s):

Takeshi Matsuda

Keyword(s):

Feature Extraction ◽

Matrix Factorization ◽

Web Application ◽

Solution Space ◽

Non Negative Matrix Factorization

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Supporting protocol for use-case 1: N-linked glycan m/z candidate detection in "M2aia - Interactive fast and memory efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data" v1 (protocols.io.brdnm25e)

protocols.io ◽

10.17504/protocols.io.brdnm25e ◽

2021 ◽

Author(s):

Jonas Cordes

Keyword(s):

Mass Spectrometry ◽

Mass Spectrometry Imaging ◽

Use Case ◽

Imaging Data ◽

Modal Mass ◽

2D And 3D ◽

Memory Efficient

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Supporting protocol for use-case 2: Multi-modal 3D image reconstruction in "M2aia - Interactive, fast and memory efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data" v1 (protocols.io.brw5m7g6)

protocols.io ◽

10.17504/protocols.io.brw5m7g6 ◽

2021 ◽

Author(s):

Jonas Cordes

Keyword(s):

Mass Spectrometry ◽

Image Reconstruction ◽

Mass Spectrometry Imaging ◽

Use Case ◽

3D Image ◽

Imaging Data ◽

3D Image Reconstruction ◽

Modal Mass ◽

2D And 3D ◽

Memory Efficient

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Evaluation of Digital Image Recognition Methods for Mass Spectrometry Imaging Data Analysis

Journal of the American Society for Mass Spectrometry ◽

10.1007/s13361-018-2073-0 ◽

2018 ◽

Vol 29 (12) ◽

pp. 2467-2470 ◽

Cited By ~ 8

Author(s):

Måns Ekelöf ◽

Kenneth P. Garrard ◽

Rika Judd ◽

Elias P. Rosen ◽

De-Yu Xie ◽

...

Keyword(s):

Mass Spectrometry ◽

Data Analysis ◽

Image Recognition ◽

Digital Image ◽

Mass Spectrometry Imaging ◽

Imaging Data

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massPix: an R package for annotation and interpretation of mass spectrometry imaging data for lipidomics

Metabolomics ◽

10.1007/s11306-017-1252-5 ◽

2017 ◽

Vol 13 (11) ◽

Cited By ~ 6

Author(s):

Nicholas J. Bond ◽

Albert Koulman ◽

Julian L. Griffin ◽

Zoe Hall

Keyword(s):

Mass Spectrometry ◽

Mass Spectrometry Imaging ◽

R Package ◽

Imaging Data

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A New Algorithm for Feature Extraction of Plant Diseases and Insect Pests Signal Based on Optimal Wavelet Packet and Non-negative Matrix Factorization

Proceedings of the 2nd International Conference on Electronics, Network and Computer Engineering (ICENCE 2016) ◽

10.2991/icence-16.2016.91 ◽

2016 ◽

Author(s):

Changcheng Li ◽

Shuyun Cai ◽

Laiwu Yin

Keyword(s):

Feature Extraction ◽

Matrix Factorization ◽

Insect Pests ◽

Wavelet Packet ◽

Plant Diseases ◽

Non Negative Matrix Factorization

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