Molecular Insights into Beneficial Effects of Tea-Plant Growth and Selenium Enrichment by Herbaspirillum camelliae

2021 ◽  
pp. 37-51
Author(s):  
Wei Cheng ◽  
Xuejing Yu ◽  
Xingguo Wang
Keyword(s):  
Plant Growth ◽  
Molecular Mechanisms ◽  
Acc Deaminase ◽  
Nitrogen Sources ◽  
Endophytic Bacterium ◽  
Tea Plant ◽  
Nitrogen Fixing ◽  
Biotic And Abiotic Stress ◽  
Bacterial Strains ◽  
Secretion Systems

Herbaspirillum camelliae WT00C, as a tea-plant endophytic bacterium, not only colonizes specifically in tea plants but also promotes tea-plant growth and selenium enrichment. Different from diazotrophic endophytes H. seropedicae, H. frisingense and H. rubrisubalbicans, H. camelliae WT00C does not display nitrogen-fixing activity. To understand the molecular mechanisms of promoting the growth of tea plant and Se-enrichment, we sequenced and annotated the genome of H. camelliae WT00C. The results showed that the genome was composed of 6,079,821 base pairs with a total of 5,537 genes. The genomic survey also revealed that H. camelliae WT00C was a multifunctional bacterium metabolizing a variety of carbon and nitrogen sources and defending against biotic and abiotic stress. Although this bacterium did not have intact nitrogen-fixing genes, its genome held the genes responsible for indole-3-acetic acid (IAA) biosynthesis, 1-aminocyclopropane-1-carboxylate (ACC) deamination, siderophore synthesis, ammonia formation, urea metabolism, glutathione and selenocompound metabolisms. Biosynthesis of IAA, siderophore, ammonia, urea and ACC deaminase could explain why two bacterial strains promote tea-plant growth and development. Selenocompound metabolism in this bacterium might also benefit tea-plant growth and Se-enrichment. In addition, the genome of H. camelliae also contained a multitude of protein secretion systems T1SS, T3SS, T4SS and T6SS, in which T4SS did not exhibit in other members of the genus Herbaspirillum.

scholarly journals Plant Growth Promoting Abilities of Novel Burkholderia-Related Genera and Their Interactions With Some Economically Important Tree Species

2021 ◽  
Vol 5 ◽  
Author(s):  
Munusamy Madhaiyan ◽  
Govindan Selvakumar ◽  
Tan HianHwee Alex ◽  
Lin Cai ◽  
Lianghui Ji
Keyword(s):  
Plant Growth ◽  
Oil Palm ◽  
Tree Species ◽  
Growth Promotion ◽  
Nitrogenase Activity ◽  
Acc Deaminase ◽  
Bacterial Strains ◽  
Pgp Traits ◽  
Plant Growth Promoting ◽  
Promote Plant Growth

A survey of bacterial endophytes associated with the leaves of oil palm and acacias resulted in the isolation of 19 bacterial strains belonging to the genera Paraburkholderia, Caballeronia, and Chitinasiproducens, which are now regarded as distinctively different from the parent genus Burkholderia. Most strains possessed one or more plant growth promotion (PGP) traits although nitrogenase activity was present in only a subset of the isolates. The diazotrophic Paraburkholderia tropica strain S39-2 with multiple PGP traits and the non-diazotrophic Chitinasiproducens palmae strain JS23T with a significant level of 1-aminocyclopropane-1-carboxylate (ACC) deaminase activity were selected to investigate the influence of bacterial inoculation on some economically important tree species. Microscopic examination revealed that P. tropica S39-2 was rhizospheric as well as endophytic while C. palmae JS23T was endophytic. P. tropica strain S39-2 significantly promoted the growth of oil palm, eucalyptus, and Jatropha curcas. Interestingly, the non-diazotrophic, non-auxin producing C. palmae JS23T strain also significantly promoted the growth of oil palm and eucalyptus although it showed negligible effect on J. curcas. Our results suggest that strains belonging to the novel Burkholderia-related genera widely promote plant growth via both N-independent and N-dependent mechanisms. Our results also suggest that the induction of defense response may prevent the colonization of an endophyte in plants.

Nitrogen-Fixing and Plant Growth-Promoting Ability of Two Endophytic Bacterial Strains Isolated from Sugarcane Stalks

Sugar Tech ◽  
2015 ◽  
Vol 18 (4) ◽  
pp. 373-379 ◽  
Author(s):  
Yong-Xiu Xing ◽  
Chun-Yan Wei ◽  
Yao Mo ◽  
Li-Tao Yang ◽  
Si-Liang Huang ◽  
...  
Keyword(s):  
Plant Growth ◽  
Nitrogen Fixing ◽  
Bacterial Strains ◽  
Plant Growth Promoting ◽  
Growth Promoting

scholarly journals Multitrait Pseudomonas spp. Isolated from Monocropped Wheat (Triticum aestivum) Suppress Fusarium Root and Crown Rot

2020 ◽  
Vol 110 (3) ◽  
pp. 582-592 ◽  
Author(s):  
Habib Ullah ◽  
Humaira Yasmin ◽  
Saqib Mumtaz ◽  
Zahra Jabeen ◽  
Rabia Naz ◽  
...  
Keyword(s):  
Plant Growth ◽  
Pathogenic Fungi ◽  
Endophytic Bacterium ◽  
Crown Rot ◽  
Common Disease ◽  
Arid Zones ◽  
Bacterial Strains ◽  
Beneficial Bacteria ◽  
Wheat Varieties ◽  
Root And Crown Rot

Fusarium root and crown rot is the most common disease of wheat, especially wheat grown in arid zones where drought is a common issue. The development of environmentally safe approaches to manage diseases of food crops is important for humans. The monocropping system recruits beneficial bacteria that promote plant growth through nutrient solubilization and pathogen suppression. In this study, a field where wheat was monocropped for 5 successive years under rainfed conditions was identified. A total of 29 bacterial isolates were obtained from the rhizosphere, endosphere, and phyllosphere of wheat at its harvesting stage. The Gram-negative bacteria were less prevalent (41%) but the majority (75%) exhibited plant growth-promoting traits. The ability of strains to solubilize nutrients (solubilization index = 2.3 to 4), inhibit pathogenic fungi (25 to 56%), and produce antifungal compounds was highly variable. The rhizobacteria significantly promoted the growth and disease resistance of wheat varieties such as Pirsbak-2015 and Galaxy-2013 by inducing antioxidant enzyme activity (0.2- to 2.1-fold). The bacterial strains were identified as Ochrobactrum spp., Acinetobacter spp., and Pseudomonas mediterranea by 16S rRNA and rpoD sequence analysis. The endophytic bacterium P. mediterranea HU-9 exhibited maximum biocontrol efficacy against wheat root and crown rot diseases with a disease score/disease index from 1.8 to 3.1. The monocropping systems of rainfed agriculture are an ideal source of beneficial bacteria to use as bioinoculants for different crops.

scholarly journals Isolation, Identification and Characterization of Endophytic Bacterium Rhizobium oryzihabitans sp. nov., from Rice Root with Biotechnological Potential in Agriculture

2020 ◽  
Vol 8 (4) ◽  
pp. 608 ◽  
Author(s):  
Juanjuan Zhao ◽  
Xia Zhao ◽  
Junru Wang ◽  
Qi Gong ◽  
Xiaoxia Zhang ◽  
...  
Keyword(s):  
16S Rrna ◽  
Plant Growth ◽  
Growth Promotion ◽  
Acc Deaminase ◽  
Endophytic Bacterium ◽  
Housekeeping Genes ◽  
Biotechnological Potential ◽  
Plant Growth Promoting ◽  
Comparative Genomes

A flagellate, rod–shaped bacterium designated strain M15T was isolated from rice roots. Phylogenetic analysis based on the sequences of the 16S rRNA, housekeeping genes and genomes showed that the isolate belonged to the genus Rhizobium, with the highest 16S rRNA similarity to Rhizobium radiobacter LMG140T (99.64%) and Rhizobium pusense NRCPB10T (99.36%), respectively. The complete genome of the strain M15T has a 59.28% G+C content, and the highest average nucleotide identity (ANI) and DNA-DNA relatedness (DDH) values were obtained with R. radiobacter LMG140T (88.11%, 54.80%), R. pusense NRCPB10T (86.00%, 53.00%) and R. nepotum 39/7T (88.80%, 49.80%), respectively. Plant growth-promoting characteristics tests showed that the strain M15T produced siderophore, 1–aminocyclopropane–1–carboxylate (ACC) deaminase and indole-3-acetic acid (IAA) and also produced some secondary metabolites according to the analysis of the comparative genomes. Based on the data mentioned above, we proposed that the strain M15T represented a novel species of the genus Rhizobium, named Rhizobium oryzihabitans sp. nov. The type strain is M15T (=JCM 32903T  = ACCC 60121T), and the strain M15T can be a novel biofertilizer Rhizobium to reduce the use of synthetic fertilizers for plant growth promotion.

scholarly journals A Critical Review on Plant Growth-Promoting Rhizobacteria (PGPR) as a Drought Stress Management Tool

2021 ◽  
pp. 44-66
Author(s):  
Shamal S. Kumar ◽  
Ananta G. Mahale ◽  
Md. Mifta Faizullah ◽  
J. Radha Krishna ◽  
Tharun K. Channa
Keyword(s):  
Drought Stress ◽  
Plant Growth ◽  
Plant Root ◽  
Acc Deaminase ◽  
Plant Growth Promoting Rhizobacteria ◽  
Management Tool ◽  
Abiotic Factor ◽  
Bacterial Strains ◽  
Plant Growth Promoting ◽  
Growth Promoting

Water scarcity is known as a major stumbling block towards crop development and its output all over the world. Certain free-living bacterial strains have been found near the plant root zones which have shown to improve resistance of plants towards water stress. Despite availability of basic nutrients, drought an abiotic factor substantially inhibits growth, development and yield of crops by causing an increase in ethylene levels. It is a good idea to incorporate the use of a management tool which is the utilization of plant growth-promoting rhizobacteria to help several crops manage drought conditions. Drought stress in crops can be alleviated by reducing ethylene synthesis, exopolysaccharide, osmoregulation, Indole-3-acetic acid and aggregation with the ACC deaminase-containing plant growth-promoting rhizobacteria. Inoculating pathogens like root rot (Macrophomina phaseolina) affected plant with Pseudomonas fluorescens strain TDK1 with ACC deaminase function improves drought stress. Using plant growth-promoting rhizobacteria to mitigate the negative imbibes of drought in most crops is a good idea. Several studies have been carried out on plant growth-promoting rhizobacteria, as its inoculation not only manages drought related conditions but increases root hair growth and lateral root, which assist in increased water and nutrient uptake. It limits ethylene supply, alternatively increases plant root growth by hydrolyzing 1-aminocyclopropane-1-carboxylic acid (ACC). This review will give us a perspective on the importance of plant growth-promoting rhizobacteria, as it is one of the efficient tools that helps manage drought stress on several crops.

scholarly journals Potassium solubilization in phonolite rock by diazotrophic bacteria

2017 ◽  
Vol 8 (1) ◽  
pp. 17 ◽  
Author(s):  
Ligiane Aparecida Florentino ◽  
Adauton Vilela Rezende ◽  
Cássia Cristina Bachião Miranda ◽  
Aline Carvalho Mesquita ◽  
José Ricardo Mantovani ◽  
...  
Keyword(s):  
Plant Growth ◽  
Ph Value ◽  
Carbon Sources ◽  
Control Treatment ◽  
Nitrogen Fixing ◽  
Diazotrophic Bacteria ◽  
Bacterial Strains ◽  
Nitrogen Fixing Bacteria ◽  
Rock Powder ◽  
Potential Use

Some strains of nitrogen fixing bacteria, besides fixing the N2, can produce phytohormones, control pathogens, act in solubilization of minerals containing phosphorus (P) and potassium (K), contributing to plant growth. However, the solubilization of minerals containing K has been little exploited. Therefore, the aim of this study was to evaluate potassium solubilization (K) of phonolite rock by strains of associative nitrogen fixing bacteria supplied with two different carbon sources. Twelve bacterial strains were cultured for seven days at 25°C in Aleksandrov medium supplemented with phonolite rock powder. The experiment was carried out in a completely randomized factorial design, 13 x 2 (12 bacterial strains and a control without inoculation) and two carbon sources (glucose and sucrose) with four repetitions. After the growth, the supernatant was separated by centrifugation and analyzed for the final pH value and the content of K. All diazotrophic bacteria strains contributed to increase the release of K when compared to the control treatment. The strain UNIFENAS 100-94 solubilized 130 mg L-1 K in the presence of the two carbon sources, indicating the potential use of these diazotrophic bacterial strains for K solubilization from minerals.

scholarly journals Deciphering the Potential of Rhizobium pusense MB-17a, a Plant Growth-Promoting Root Endophyte, and Functional Annotation of the Genes Involved in the Metabolic Pathway

2021 ◽  
Vol 8 ◽  
Author(s):  
Twinkle Chaudhary ◽  
Rajesh Gera ◽  
Pratyoosh Shukla
Keyword(s):  
Plant Growth ◽  
Mung Bean ◽  
Growth Promotion ◽  
Acc Deaminase ◽  
Endophytic Bacterium ◽  
Fresh Weight ◽  
Root Endophyte ◽  
Plant Growth Promoting ◽  
Growth Promoting ◽  
Plant Growth Promoting Traits

Plant growth-promoting rhizobacteria (PGPR) are root endophytic bacteria used for growth promotion, and they have broader applications in enhancing specific crop yield as a whole. In the present study, we have explored the potential of Rhizobium pusense MB-17a as an endophytic bacterium isolated from the roots of the mung bean (Vigna radiata) plant. Furthermore, this bacterium was sequenced and assembled to reveal its genomic potential associated with plant growth-promoting traits. Interestingly, the root endophyte R. pusense MB-17a showed all essential PGPR traits which were determined by biochemical and PGPR tests. It was noted that this root endophytic bacterium significantly produced siderophores, indole acetic acid (IAA), ammonia, and ACC deaminase and efficiently solubilized phosphate. The maximum IAA and ammonia produced were observed to be 110.5 and 81 μg/ml, respectively. Moreover, the PGPR potential of this endophytic bacterium was also confirmed by a pot experiment for mung bean (V. radiata), whose results show a substantial increase in the plant's fresh weight by 76.1% and dry weight by 76.5% on the 60th day after inoculation of R. pusense MB-17a. Also, there is a significant enhancement in the nodule number by 66.1% and nodule fresh weight by 162% at 45th day after inoculation with 100% field capacity after the inoculation of R. pusense MB-17a. Besides this, the functional genomic annotation of R. pusense MB-17a determined the presence of different proteins and transporters that are responsible for its stress tolerance and its plant growth-promoting properties. It was concluded that the unique presence of genes like rpoH, otsAB, and clpB enhances the symbiosis process during adverse conditions in this endophyte. Through Rapid Annotation using Subsystem Technology (RAST) analysis, the key genes involved in the production of siderophores, volatile compounds, indoles, nitrogenases, and amino acids were also predicted. In conclusion, the strain described in this study gives a novel idea of using such type of endophytes for improving plant growth-promoting traits under different stress conditions for sustainable agriculture.

Characterization of plant growth promoting rhizobacteria isolated from polluted soils and containing 1-aminocyclopropane-1-carboxylate deaminase

2001 ◽  
Vol 47 (7) ◽  
pp. 642-652 ◽  
Author(s):  
Andrei A Belimov ◽  
Vera I Safronova ◽  
Tatyana A Sergeyeva ◽  
Tatyana N Egorova ◽  
Victoria A Matveyeva ◽  
...  
Keyword(s):  
Plant Growth ◽  
Root Elongation ◽  
Indian Mustard ◽  
Acc Deaminase ◽  
Plant Growth Promoting Rhizobacteria ◽  
Sand Culture ◽  
Bacterial Strains ◽  
Pot Experiments ◽  
Plant Growth Promoting ◽  
Growth Promoting

Fifteen bacterial strains containing 1-aminocyclopropane-1-carboxylate (ACC) deaminase were isolated from the rhizoplane of pea (Pisum sativum L.) and Indian mustard (Brassica juncea L.) grown in different soils and a long-standing sewage sludge contaminated with heavy metals. The isolated strains were characterized and assigned to various genera and species, such as Pseudomonas brassicacearum, Pseudomonas marginalis, Pseudomonas oryzihabitans, Pseudomonas putida, Pseudomonas sp., Alcaligenes xylosoxidans, Alcaligenes sp., Variovorax paradoxus, Bacillus pumilus, and Rhodococcus sp. by determination of 16S rRNA gene sequences. The root elongation of Indian mustard and rape (Brassica napus var. oleifera L.) germinating seedlings was stimulated by inoculation with 8 and 13 isolated strains, respectively. The bacteria were tolerant to cadmium toxicity and stimulated root elongation of rape seedlings in the presence of 300 µM CdCl2 in the nutrient solution. The effect of ACC-utilising bacteria on root elongation correlated with the impact of aminoethoxyvinylglycine and silver ions, chemical inhibitors of ethylene biosynthesis. A significant improvement in the growth of rape caused by inoculation with certain selected strains was also observed in pot experiments, when the plants were cultivated in cadmium-supplemented soil. The biomass of pea cv. Sparkle and its ethylene sensitive mutant E2 (sym5), in particular, was increased through inoculation with certain strains of ACC-utilising bacteria in pot experiments in quartz sand culture. The beneficial effect of the bacteria on plant growth varied significantly depending on individual bacterial strains, plant genotype, and growth conditions. The results suggest that plant growth promoting rhizobacteria containing ACC deaminase are present in various soils and offer promise as a bacterial inoculum for improvement of plant growth, particularly under unfavourable environmental conditions.Key words: ACC deaminase, cadmium, ethylene, Indian mustard, pea, phytoremediation, rape, rhizobacteria.

scholarly journals Acidovorax pan-genome reveals specific functional traits for plant beneficial and pathogenic plant-associations

2021 ◽  
Vol 7 (12) ◽  
Author(s):  
Roberto Siani ◽  
Georg Stabl ◽  
Caroline Gutjahr ◽  
Michael Schloter ◽  
Viviane Radl
Keyword(s):  
Plant Growth ◽  
Plant Pathogens ◽  
Growth Promotion ◽  
Lotus Japonicus ◽  
Bacterial Strains ◽  
Secretion Systems ◽  
Free Living ◽  
Single Strain ◽  
Content Type ◽  
Link Type

Beta-proteobacteria belonging to the genus Acidovorax have been described from various environments. Many strains can interact with a range of hosts, including humans and plants, forming neutral, beneficial or detrimental associations. In the frame of this study, we investigated the genomic properties of 52 bacterial strains of the genus Acidovorax , isolated from healthy roots of Lotus japonicus, with the intent of identifying traits important for effective plant-growth promotion. Based on single-strain inoculation bioassays with L. japonicus, performed in a gnotobiotic system, we distinguished seven robust plant-growth promoting strains from strains with no significant effects on plant-growth. We showed that the genomes of the two groups differed prominently in protein families linked to sensing and transport of organic acids, production of phytohormones, as well as resistance and production of compounds with antimicrobial properties. In a second step, we compared the genomes of the tested isolates with those of plant pathogens and free-living strains of the genus Acidovorax sourced from public repositories. Our pan-genomics comparison revealed features correlated with commensal and pathogenic lifestyle. We showed that commensals and pathogens differ mostly in their ability to use plant-derived lipids and in the type of secretion-systems being present. Most free-living Acidovorax strains did not harbour any secretion-systems. Overall, our data indicate that Acidovorax strains undergo extensive adaptations to their particular lifestyle by horizontal uptake of novel genetic information and loss of unnecessary genes.

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