scholarly journals Isotope effects in the biological processes. Isotope effect in the drug metabolism study.

RADIOISOTOPES ◽  
1986 ◽  
Vol 35 (4) ◽  
pp. 201-205
Author(s):  
Shigeo BABA
Keyword(s):  
Drug Metabolism ◽  
Isotope Effect ◽  
Isotope Effects ◽  
Biological Processes ◽  
Metabolism Study

The imprint of anammox on the stable isotope compositions of nitrogen-bearing molecules

2020 ◽  
Author(s):  
Paul Magyar ◽  
Damian Hausherr ◽  
Robert Niederdorfer ◽  
Jing Wei ◽  
Joachim Mohn ◽  
...  
Keyword(s):  
Stable Isotope ◽  
Isotope Effect ◽  
Redox Reactions ◽  
Isotope Effects ◽  
Nitrogen Isotope ◽  
Biological Processes ◽  
Fixed Nitrogen ◽  
Ecological Complexity ◽  
Anammox Process ◽  
Isotope Measurements

<p>Stable isotope measurements of nitrogen and oxygen in nitrogen-containing molecules provide important constraints on the sources, sinks and pools of these molecules in the environment. Anammox is one of two known biological processes for converting fixed nitrogen to N<sub>2</sub>, and through its consumption of ammonium and nitrite and production of nitrate, it impacts the supply of a wide variety of fixed N molecules. Nevertheless, the isotope fractionations associated with the various anammox-associated redox reactions remain poorly constrained. We have measured the isotope effects of anammox in microbial communities enriched for the purpose of nitrogen removal from wastewater by anammox. In this system, we can replicate the ecological complexity exhibited in environmental settings, while also performing controlled experiments. We find that under a variety of conditions, the nitrogen isotope effect for the anaerobic oxidation of ammonium in this system (NH<sub>4</sub><sup>+ </sup>to N<sub>2</sub>) is between 19‰ and 32‰, that for the reduction of nitrite (NO<sub>2</sub><sup>–</sup> to N<sub>2</sub>) is between 7‰ and 18‰, and that for the production of nitrate (NO<sub>2</sub><sup>–</sup> to NO<sub>3</sub><sup>–</sup>) is between -16‰ and -43‰. We propose that these ranges reflect both (1) a mixture of signals from different anammox-performing species and (2) variation of the isotope effect associated with the anammox process within a given microbial community under different conditions. We seek to understand further what factors control this variability to better interpret stable isotope measurements of N-bearing molecules in environmental settings.</p>

scholarly journals Nitrogen isotope effects can be used to diagnose N transformations in wastewater anammox systems

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Paul M. Magyar ◽  
Damian Hausherr ◽  
Robert Niederdorfer ◽  
Nicolas Stöcklin ◽  
Jing Wei ◽  
...  
Keyword(s):  
Isotope Effect ◽  
Isotope Composition ◽  
Isotope Effects ◽  
Nitrogen Isotope ◽  
Anammox Bacteria ◽  
Ammonium Oxidation ◽  
Experimental Conditions ◽  
N Transformations ◽  
Natural Systems ◽  
Inverse Isotope Effect

AbstractAnaerobic ammonium oxidation (anammox) plays an important role in aquatic systems as a sink of bioavailable nitrogen (N), and in engineered processes by removing ammonium from wastewater. The isotope effects anammox imparts in the N isotope signatures (15N/14N) of ammonium, nitrite, and nitrate can be used to estimate its role in environmental settings, to describe physiological and ecological variations in the anammox process, and possibly to optimize anammox-based wastewater treatment. We measured the stable N-isotope composition of ammonium, nitrite, and nitrate in wastewater cultivations of anammox bacteria. We find that the N isotope enrichment factor 15ε for the reduction of nitrite to N2 is consistent across all experimental conditions (13.5‰ ± 3.7‰), suggesting it reflects the composition of the anammox bacteria community. Values of 15ε for the oxidation of nitrite to nitrate (inverse isotope effect, − 16 to − 43‰) and for the reduction of ammonium to N2 (normal isotope effect, 19–32‰) are more variable, and likely controlled by experimental conditions. We argue that the variations in the isotope effects can be tied to the metabolism and physiology of anammox bacteria, and that the broad range of isotope effects observed for anammox introduces complications for analyzing N-isotope mass balances in natural systems.

scholarly journals Oxygen isotope fractionation during N<sub>2</sub>O production by soil denitrification

2016 ◽  
Vol 13 (4) ◽  
pp. 1129-1144 ◽  
Author(s):  
Dominika Lewicka-Szczebak ◽  
Jens Dyckmans ◽  
Jan Kaiser ◽  
Alina Marca ◽  
Jürgen Augustin ◽  
...  
Keyword(s):  
Oxygen Isotope ◽  
Soil Water ◽  
Isotope Effect ◽  
Isotope Exchange ◽  
Isotope Fractionation ◽  
Isotope Effects ◽  
N2o Production ◽  
Oxygen Isotope Fractionation ◽  
Oxygen Isotope Exchange ◽  
Incubation Experiments

Abstract. The isotopic composition of soil-derived N2O can help differentiate between N2O production pathways and estimate the fraction of N2O reduced to N2. Until now, δ18O of N2O has been rarely used in the interpretation of N2O isotopic signatures because of the rather complex oxygen isotope fractionations during N2O production by denitrification. The latter process involves nitrate reduction mediated through the following three enzymes: nitrate reductase (NAR), nitrite reductase (NIR) and nitric oxide reductase (NOR). Each step removes one oxygen atom as water (H2O), which gives rise to a branching isotope effect. Moreover, denitrification intermediates may partially or fully exchange oxygen isotopes with ambient water, which is associated with an exchange isotope effect. The main objective of this study was to decipher the mechanism of oxygen isotope fractionation during N2O production by soil denitrification and, in particular, to investigate the relationship between the extent of oxygen isotope exchange with soil water and the δ18O values of the produced N2O. In our soil incubation experiments Δ17O isotope tracing was applied for the first time to simultaneously determine the extent of oxygen isotope exchange and any associated oxygen isotope effect. We found that N2O formation in static anoxic incubation experiments was typically associated with oxygen isotope exchange close to 100 % and a stable difference between the 18O ∕ 16O ratio of soil water and the N2O product of δ18O(N2O ∕ H2O)  =  (17.5 ± 1.2) ‰. However, flow-through experiments gave lower oxygen isotope exchange down to 56 % and a higher δ18O(N2O ∕ H2O) of up to 37 ‰. The extent of isotope exchange and δ18O(N2O ∕ H2O) showed a significant correlation (R2 = 0.70, p <  0.00001). We hypothesize that this observation was due to the contribution of N2O from another production process, most probably fungal denitrification. An oxygen isotope fractionation model was used to test various scenarios with different magnitudes of branching isotope effects at different steps in the reduction process. The results suggest that during denitrification, isotope exchange occurs prior to isotope branching and that this exchange is mostly associated with the enzymatic nitrite reduction mediated by NIR. For bacterial denitrification, the branching isotope effect can be surprisingly low, about (0.0 ± 0.9) ‰, in contrast to fungal denitrification where higher values of up to 30 ‰ have been reported previously. This suggests that δ18O might be used as a tracer for differentiation between bacterial and fungal denitrification, due to their different magnitudes of branching isotope effects.

scholarly journals Continuous measurements of nitrous oxide isotopomers during incubation experiments

2016 ◽  
Author(s):  
Malte Winther ◽  
David Balslev-Harder ◽  
Søren Christensen ◽  
Anders Priemé ◽  
Bo Elberling ◽  
...  
Keyword(s):  
Nitrous Oxide ◽  
Greenhouse Gas ◽  
Isotope Effect ◽  
Atmospheric Chemistry ◽  
Isotope Effects ◽  
Denitrifying Bacteria ◽  
Central Position ◽  
Site Preference ◽  
Continuous Measurements ◽  
Incubation Experiments

Abstract. Nitrous oxide (N2O) is an important and strong greenhouse gas in the atmosphere and part of a feed-back loop with climate. N2O is produced by microbes during nitrification and denitrification in terrestrial and aquatic ecosystems. The main sinks for N2O are turnover by denitrification and photolysis and photo-oxidation in the stratosphere. The position of the isotope 15N in the linear N = N = O molecule can be distinguished between the central or terminal position (isotopomers of N2O). It has been demonstrated that nitrifying and denitrifying microbes have a different relative preference for the terminal and central position. Therefore, measurements of the site preference in N2O can be used to determine the source of N2O i.e. nitrification or denitrification. Recent instrument development allows for continuous (on the order of days) position dependent δ15N measurements at N2O concentrations relevant for studies of atmospheric chemistry. We present results from continuous incubation experiments with denitrifying bacteria, Pseudomonas fluorescens (producing and reducing N2O) and P. chlororaphis (only producing N2O). The continuous position dependent measurements reveal the transient pattern (KNO3 to N2O and N2, respectively), which can be compared to previous reported site preference (SP) values. We find bulk isotope effects of −5.5 ‰ ± 0.9 for P. chlororaphis. For P. fluorescens, the bulk isotope effect during production of N2O is −50.4 ‰ ± 9.3 and 8.5 ‰ ± 3.7 during N2O reduction. The values for P. fluorescens are in line with earlier findings, whereas the values for P. chlororaphis are larger than previously published δ15Nbulk measurements from production. The calculations of the SP isotope effect from the measurements of P. chlororaphis result in values of −6.6 ‰ ± 1.8. For P. fluorescens, the calculations results in SP values of −5.7 ‰ ± 5.6 during production of N2O and 2.3 ‰ ± 3.2 during reduction of N2O. In summary, we implemented continuous measurements of N2O isotopomers during incubation of denitrifying bacteria and believe that similar experiments will lead to a better understanding of denitrifying bacteria and N2O turnover in soils and sediments and ultimately hands-on knowledge on the biotic mechanisms behind greenhouse gas exchange of the Globe.

scholarly journals EVALUATION OF THE MONKEY AS A MODEL OF HUMAN IN DRUG METABOLISM STUDY: FOCUSING CYP2D ENZYMES

2001 ◽  
Vol 16 (supplement) ◽  
pp. 96-97
Author(s):  
S. Narimatsu ◽  
C. Takemi ◽  
H. Hichiya ◽  
D. Tsuzuki ◽  
H. Kataoka ◽  
...  
Keyword(s):  
Drug Metabolism ◽  
Metabolism Study

Isotope Effects on Chemical Equilibria. Part II. Some Further Secondary Isotope Effects of the Second Kind

1974 ◽  
Vol 52 (10) ◽  
pp. 1966-1972 ◽  
Author(s):  
Douglas James Barnes ◽  
Peter David Golding ◽  
John Marshall William Scott
Keyword(s):  
Isotope Effect ◽  
Dissociation Constants ◽  
Isotope Effects ◽  
Equilibrium Constants ◽  
Chemical Equilibria

The ratio of the dissociation constants Ka(H)/Ka(D) has been measured conductimetrically for the isotopic pairs XCH2COOH/XCD2COOH where X = Cl, PhO, and PhS. Methods of calculating the ratio of the equilibrium constants are considered in some detail. Since the isotope effect varies with the nature of the X substituent it is concluded that the simple inductive description of these effects is not tenable.

Diffusion and isotope effect in bulk-metallic glass-forming Pd–Cu–Ni–P alloys from the glass to the equilibrium melt

2003 ◽  
Vol 18 (11) ◽  
pp. 2688-2696 ◽  
Author(s):  
Volker Zöllmer ◽  
Klaus Raätzke ◽  
Franz Faupel
Keyword(s):  
Isotope Effect ◽  
Mode Coupling ◽  
Ion Beam ◽  
Isotope Effects ◽  
Glassy State ◽  
P System ◽  
Ion Beam Sputtering ◽  
Glass Forming ◽  
Atomic Transport ◽  
Beam Sputtering

We report on radiotracer diffusion measurements in metallic bulk-glass-forming Pd-Cu-Ni-P alloys. The Pd-Cu-Ni-P system, with its high stability against crystallization, allows diffusion measurements from the glassy state to the equilibrium melt for the first time. Serial sectioning was performed by grinding and ion-beam sputtering. The time and temperature as well as mass dependence, expressed in terms of the isotope effect E, of codiffusion were investigated. In the glassy state as well as in the deeply supercooled state below the critical temperature Tc, where the mode-coupling theory predicts a freezing-in of liquidlike motion, the measured very small isotope effects indicated a highly collective hopping mechanism. Below Tc, the temperature dependence showed Arrhenius-type behavior. Above Tc, the onset of liquidlike motion was evidenced by a gradual drop of the effective activation energy, resulting from the decay of hopping barriers, and by the validity of the Stokes-Einstein equation, which was found to break down below Tc. This strongly supports the mode-coupling scenario. Isotope effect measurements, which have never been carried out near Tc in any material, showed atomic transport up to the equilibrium melt to be far away from the hydrodynamic regime of uncorrelated binary collisions. The latter appears to be a prerequisite of excellent glass-forming abilities.

Untersuchungen zur Reaktion der Alkoholdehydrogenase mit Tritium-markierten Substraten

1966 ◽  
Vol 21 (6) ◽  
pp. 540-546 ◽  
Author(s):  
Dieter Palm
Keyword(s):  
Alcohol Dehydrogenase ◽  
Temperature Dependence ◽  
Isotope Effect ◽  
Substrate Binding ◽  
Isotope Effects ◽  
Direct Interaction ◽  
Enzyme Complex ◽  
Temperature Range ◽  
Yeast Alcohol Dehydrogenase ◽  
Rate Controlling Step

Unexpectedly, the isotope effect of ethanol-1-Τ as a substrate of yeast alcohol dehydrogenase, increases with rising temperature from kH/kT = 3.2 at 5 —15°C to 3.8—4.7 at 20 —35 °C. This suggests a change of the rate controlling step as proposed by MÜLLER-HILL and WALLENFELS, who investigated the temperature dependence of the activation energies in this temperature range. A comparison of the affinities of propanol and butanol with the isotope effects of the corresponding tritium labelled compounds (propanol-1-Τ 6.7 at 25 °C, butanol-1-Τ 6.8 at 25 °C) supports the proposal, that during substrate binding, there must be a direct interaction between the enzyme complex and hydrogen which is removed in the reaction. These influences are less pronounced for the ethanol homologues which are bound less tightly to the enzyme. Therefore the H transfering step proper gives a greater contribution to the overall experimental isotope effect.

2,4-Diazapentadienes. II. A Carbanion Cyclization

1972 ◽  
Vol 50 (5) ◽  
pp. 678-689 ◽  
Author(s):  
D. H. Hunter ◽  
S. K. Sim
Keyword(s):  
Isotope Effect ◽  
Solvent Effects ◽  
Isotope Effects ◽  
Substituent Effects ◽  
Deuterium Exchange ◽  
Hydrogen Deuterium Exchange ◽  
Deuterium Isotope Effect ◽  
Potassium Methoxide ◽  
Proton Shift ◽  
Hydrogen Deuterium

The mechanism of the cyclization and 1,3-proton shift of 1,3,5-triaryl-2,4-diaza-1,3-pentadienes (1) catalyzed by phenyllithium and by potassium methoxide–methanol has been studied. On the basis of substituent effects, hydrogen–deuterium exchange, isotope effects, and solvent effects, it was deduced that both the cyclization and prototropy involve a common W-shaped carbanion which rapidly cyclizes. A kinetic deuterium isotope effect of 2 was calculated for protonation of this intermediate carbanion in methanol.

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