scholarly journals Comparative DFT study of triplet and singlet elementary oxidation acts of the cyclohexane and 1,3-cyclohexadiene initiated by primary interaction with 3O2 under SCF conditions

2019 ◽  
Vol 60 (11) ◽  
pp. 128-142
Author(s):  
Alexandre I. Kourdioukov ◽  
Keyword(s):  
Density Functional ◽  
Dft Method ◽  
Basis Set ◽  
Heavy Oils ◽  
Ceteris Paribus ◽  
Singlet States ◽  
Butane Mixture ◽  
Dehydrogenation Reactions ◽  
First Time ◽  
Propane Butane

The primary stages of the oxidation of model cyclohexane and 1,3-cyclohexadiene by triplet molecular oxygen and subsequent transformations involving triplet and singlet states were studied for the first time by the DFT method with the density functional B3LYP with the basis set 6-311++g(df,p). It was shown that, ceteris paribus, cyclohexane and 1,3-cyclohexadiene will be orders of magnitude more reactive compared to the activity of acyclic saturated hydrocarbons under SCF conditions when the oxidation process is initiated by the primary reaction with 3O2, which allows the propane-butane mixture to be effectively used as SCF conditions of heavy oils and use air purge to activate this process. The triplet associate complexes resulting from the oxidative cleavage of the secondary C–H bond of cyclohexane and 1,3-cyclohexadiene consist of hydrogen-bonded hydroperoxyl radical and cyclohexyl radical or 1,3-cyclohexadiene radical, respectively. These complexes can dissociate into unbound pairs of radicals, and therefore further reactions can proceed in the triplet or singlet direction. The singlet direction is characterized by hydrate-induced hydroperoxide-carbonyl transformation, as well as other hydrate-induced rearrangements. The triplet direction is characterized by the occurrence of triplet rearrangement, which in its essence is a triplet recombination of associated radicals. Associate triplet complexes can be agents of radical hydroperoxyl and alkyl activity, as well as agents of radical hydroxyl and alkoxyl activity. Most oxidative dehydrogenation reactions are absolutely real under a number of conditions, namely, they must take place under SCF conditions, as well as in the presence of an excess of SCF solvent necessary for the effective shift of thermodynamic equilibrium towards the target products in accordance with the Le Chatelier principle.

Multiplicity spin, structure, and charge of iron-verdohemeoxygenase complex: A comparison study by the DFT method

2020 ◽  
Vol 24 (10) ◽  
pp. 1208-1214
Author(s):  
Hamideh Tasharofi ◽  
Maryam Daghighi Asli ◽  
Parisa Rajabali Jamaat
Keyword(s):  
Heme Oxygenase ◽  
Density Functional ◽  
Complex Structure ◽  
Three Dimensional ◽  
Dft Method ◽  
Basis Set ◽  
Dimensional Structure ◽  
Central Metal ◽  
Stable States ◽  
And Function

Recently the three-dimensional structure of verdoheme heme oxygenase complex was revealed. However, many parameters of verdoheme heme oxygenase’s complex structure and their role and function on Heme degradation were unknown. In this work the structure of iron verdoheme in complex with heme oxygenase was compared by the density functional theory (DFT)-based B3LYP method using the 6-31G basis set. Many parameters such as charge of verdoheme and iron as central metal, electron distribution, spin multiplicity of the molecule and proximal substituents effects on verdoheme ring stabilization and their arrangement are discussed and compared for twelve different conformations of the molecules to find the most energetically stable states.

Experimental and Theoretical Studies on the Molecular Structure, FT-IR, NMR, HOMO, LUMO, MESP, and Reactivity Descriptors of (E)-1-(2,3-Dihydrobenzo[b][1,4]dioxin-6-yl)-3-(3,4,5-trimethoxyphenyl)prop-2-en-1-one

2020 ◽  
Vol 17 (SpecialIssue1) ◽  
pp. 54-72
Author(s):  
Rahul Ashok Shinde ◽  
Vishnu A shok Adole ◽  
Bapu Sonu Jagdale ◽  
Thansing Bhavsing Pawar
Keyword(s):  
Molecular Structure ◽  
Electrostatic Potential ◽  
Density Functional ◽  
Dft Method ◽  
Basis Set ◽  
Group Symmetry ◽  
Ir Absorption ◽  
Hydrogen Atoms ◽  
Reactivity Descriptors ◽  
Ft Ir

The present research deals with the synthesis, characterization and density functional theory (DFT) study of (E)-1-(2,3-dihydrobenzo[b][1,4]dioxin-6-yl)-3-(3,4,5-trimethoxyphenyl)prop-2-en-1-one (DTMPP). For the computational investigation, DFT method at B3LYP/6-311++G(d,p) basis set has been used. Herein, structural properties like molecular structure, bond lengths, and bond angles of the DTMPP have been explored. The all-important examination of the electronic properties; HOMO and LUMO energies were studied by the time-dependent DFT (TD-DFT) method. The experimental and theoretical spectroscopic Investigation on FT-IR, 1HNMR, 13C NMR has been unveiled in the present research. To study the chemical behaviour of the DTMPP, Mulliken atomic charges, molecular electrostatic surface potential, and reactivity descriptors have been explored. The dipole moment of the DTMPP is 1.27 Debye with C1 point group symmetry and -1225.77 a.u. E(B3LYP) energy. The most electropositive carbon and hydrogen atoms in the DTMPP are C14 and H27 respectively. The C1-C6 bond is the longest (1.4089 Å) C=C bond in the DTMPP. The oxygen atom O33 is having short contact interaction with the hydrogen atom H44 with a distance of 3.3258 Å. The molecular electrostatic potential plot predicts the positive electrostatic potential is around hydrogen atoms. The FT-IR assignments were made by comparing the experimental FT-IR absorption peaks with the scaled frequencies obtained using DFT method. Furthermore, some valuable insights on thermochemical data are obtained using the harmonic frequencies at same basis set.

scholarly journals The difference in stability between 5′R and 5′S diastereomers of 5′,8-cyclopurine-2′-deoxynucleosides. DFT study in gaseous and aqueous phase

2010 ◽  
Vol 8 (1) ◽  
pp. 134-141 ◽  
Author(s):  
Boleslaw Karwowski
Keyword(s):  
Density Functional ◽  
Bond Cleavage ◽  
Basis Set ◽  
Small Range ◽  
Functional Theory ◽  
The Density Functional Theory ◽  
Formic Acid Hydrolysis ◽  
The Difference ◽  
The Stability ◽  
First Time

AbstractOxidatively generated damage to DNA frequently appears in the human genome as an effect of aerobic metabolism or as the result of exposure to exogenous oxidizing agents. Due to these facts it has been decided to calculate the stability of 5′,8-cyclo-2′-deoxyadenosine/guanosine (cdA, cdG) in their 5′R and 5′S diastereomeric forms. For all points of quantum mechanics studies presented, the density functional theory (DFT) with B3LYP parameters on 6-311++G** basis set level was used. The calculations showed a significant negative enthalpy for glycosidic bond cleavage reaction for cationic forms and slightly negative for neutral ones. The preliminary study of the discussed process has shown the nature of stepwise nucleophilic substitution DN*AD type mechanism. Surprisingly, the different values in free energy, between short-lived oxacarbenium ion intermediates, have been found to lie over a relatively small range, around 1 and 2.8 kcal mol−1. For anions, the decomposition enthalpies were found as positive in aqueous phases. These theoretical results are supported by the formic acid hydrolysis experiments of both diastereomers of cdA, for the first time. (5′S)cdA exhibited higher stability than (5′R)cdA.

Investigation of Some Sulphur Halides — An Application of the Pseudopotential Method

1983 ◽  
Vol 38 (4) ◽  
pp. 463-472
Author(s):  
T. Krüger ◽  
H. Preuß
Keyword(s):  
Significant Role ◽  
Density Functional ◽  
Correlation Energy ◽  
Basis Set ◽  
Pseudopotential Method ◽  
Basis Sets ◽  
Molecular Parameters ◽  
First Time ◽  
D Orbitals

Semilocal pseudopotentials are used in combination with a density-functional approximation for the correlation energy and special optimized basis sets to investigate the sulphur halides SF, SF2, SF3, FSSF, SSF2, SCl, SCl2, ClSSCl and SSCl2. It turns out that the inclusion of d-orbitals in the basis set playes a significant role with respect to the quality of the calculated molecular parameters. Properties of SF3 are calculated for the first time, and the differences between the disulphur difluorides and the disulphur dichlorides are explained.

Electronic, Vibrational, and Structural Study of Polysaccharide Agar-Agar Biopolymer

2021 ◽  
Vol 33 ◽  
pp. 35-46
Author(s):  
Ankita Pandey ◽  
Abhishek Kumar Gupta ◽  
Shivani Gupta ◽  
Sarvesh Kumar Gupta ◽  
Rajesh Kumar Yadav
Keyword(s):  
Charge Distribution ◽  
Molecular Orbital ◽  
Structural Study ◽  
Density Functional ◽  
Vibrational Analysis ◽  
Chemical Properties ◽  
Atomic Charge ◽  
Dft Method ◽  
Basis Set ◽  
Mulliken Charge

Polysaccharide biopolymer Agar-Agar extracted from red algae is a natural and biodegradable polymer. It is a combination of agarose (a neutral and linear polymer, with repeated units of agarobiose) and a heterogeneous mixture of agaropectin (a charged sulfated polymer). In this study, a comparative study of structural vibrational and electrochemical properties of agar-agar biopolymer with two different methods HF (Hartree-Fock) and DFT (Density Functional Theory) using a basis set 631+G (d, p) is performed. The comparative structural study of agar-agar biopolymer by HF and DFT method has been carried out to calculate the stability of the molecule. The thermionic properties and Mulliken charge distribution are analysed to deliver a quantitative study of partial atomic charge distribution. The overall vibrational analysis of primal modes of the biopolymer has been studied using FTIR analysis. Based on highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) composition and energies, various chemical parameters of the biopolymer have been evaluated. The Physico-chemical properties of this polysaccharide show a strong correlation with its optimized structure. Agar-agar has its application in the electrochemical, biotechnological, and pharmaceutical fields, as a stabilizer and gelling material.

VIBRATIONAL MODES STUDY OF METHYL ORANGE USING SERS-MEASUREMENT AND THE DFT METHOD

2008 ◽  
Vol 22 (29) ◽  
pp. 2869-2879 ◽  
Author(s):  
TING-JIAN JIA ◽  
GE SONG ◽  
PENG-WEI LI ◽  
TING-CHAO HE ◽  
YU-JUN MO ◽  
...  
Keyword(s):  
Silver Nanoparticles ◽  
Raman Spectrum ◽  
Methyl Orange ◽  
Density Functional ◽  
Infrared Absorption Spectrum ◽  
Dft Method ◽  
Basis Set ◽  
Adsorbed State ◽  
Surface Enhanced ◽  
Surface Enhanced Raman

This paper experimentally observes the Normal Raman spectrum (NRS) and infrared absorption spectrum of methyl orange (MO) and presents theoretical vibrational spectra calculated from a density functional theory (DFT) method on the basis of B3LYP with 6–31 basis set. The calculated results show very good agreement with the experimentally observed IR and Raman frequencies. We also report the surface enhanced Raman spectrum (SERS) of MO adsorbed on silver nanoparticles surface. Finally, the possible adsorbed state of MO on the silver nanoparticles surface is discussed.

scholarly journals Ultrasound Assisted Synthesis, Molecular Structure,UV-Visible Assignments, MEP and Mulliken Charges Study of (E)-3-(4-chlorophenyl)-1-(4-methoxyphenyl) prop-2-en-1-one: Experimental and DFT Correlational

2021 ◽  
Vol 18 (1) ◽  
pp. 86-96
Author(s):  
Rohit S. Shinde
Keyword(s):  
Density Functional Theory ◽  
Density Functional ◽  
Density Functional Theory Method ◽  
Atomic Charge ◽  
Dft Method ◽  
Basis Set ◽  
Geometrical Parameters ◽  
Functional Theory ◽  
Vibrational Assignments ◽  
Uv Visible

Present investigation deals with the synthesis and density functional theory study (DFT) of a chalcone derivative; (E)-3-(4-chlorophenyl)-1-(4-methoxyphenyl)prop-2-en-1-one (CPMPP). The synthesis of a CPMPP has been carried out by the reaction of 4-methoxyacetophenone and 4-chlorobenzalehyde in ethanol at 30 ℃ under ultrasound irradiation. The structure of a synthesized chalcone is affirmed on the basis of FT-IT, 1H NMR and 13C NMR. The geometry of a CPMPP is optimized by using the density functional theory method at the B3LYP/6-31G(d,p) basis set. The optimized geometrical parameters like bond length and bond angles have been computed. The absorption energies, oscillator strength, and electronic transitions have been derived at the TD-DFT method at the B3LYP/6-31G(d,p) level of theory for B3LYP/6-31G(d p) optimized geometries. The effect of polarity on the absorption energies is discussed by computing UV-visible results in dichloromethane (DCM). Since theoretically obtained wavenumbers are typically higher than experimental wavenumbers, computed wavenumbers were scaled with a scaling factor, and vibrational assignments were made by comparing experimental wavenumbers to scaled theoretical wavenumbers. Quantum chemical parameters have been determined and examined. Molecular electrostatic potential (MEP) surface plot analysis has been carried out at the same level of theory. Mulliken atomic charge study is also discussed in the present study.

Spectroscopic investigation, HOMO–LUMO energies, natural bond orbital (NBO) analysis and thermodynamic properties of two-armed macroinitiator containing coumarin with DFT quantum chemical calculations

2016 ◽  
Vol 94 (6) ◽  
pp. 583-593 ◽  
Author(s):  
Feride Akman
Keyword(s):  
Density Functional Theory ◽  
Molecular Orbital ◽  
Electrostatic Potential ◽  
Density Functional ◽  
Natural Bond Orbital ◽  
Dft Method ◽  
Basis Set ◽  
Orbital Method ◽  
Functional Theory ◽  
Homo Lumo

In the present work, two-armed macroinitiator containing coumarin were synthesized, characterized by Fourier transform infrared spectroscopy and 1H nuclear magnetic resonance techniques and investigated theoretically using density functional theory (DFT) calculations. The molecular geometry, fundamental vibrational frequencies, atomic charges obtained from atomic polar tensors and Mulliken were analyzed by means of structure optimizations based on the DFT method with 6-31G+(d, p) as a basis set. The 1H chemical shifts were calculated by the gauge-including atomic orbital method and compared with available experimental data. The electronic properties, such as highest occupied molecular orbital – lowest unoccupied molecular orbital (HOMO–LUMO) energies, electron affinity, electronegativity, ionization energy, hardness, chemical potential, global softness, and global electrophilicity were calculated by using the DFT method. The electrostatic potential and molecular electrostatic potential surfaces were performed to predict the reactive sites of the two-armed macroinitiator. The energy difference between acceptor and donor and stabilization energy were determined using natural bond orbital analysis. The results show that the occurrence of intramolecular charge transfers within the polymer. Time-dependent density functional theory calculations of visible spectra were analyzed at different solvents. Finally, thermodynamic functions, such as enthalpy, heat capacity, and entropy, of the two-armed macroinitiator at different temperatures were calculated and the relationship with temperature was investigated.

X-ray and DFT Investigation of (E)-4-bromo-5-methoxy-2-((o-tolylimino)methyl)phenol Compound

2018 ◽  
pp. 454-461
Keyword(s):  
Density Functional ◽  
Theoretical Calculations ◽  
Population Analysis ◽  
Diffraction Method ◽  
Dft Method ◽  
Basis Set ◽  
X Ray Diffraction ◽  
Mulliken Population ◽  
Charge Delocalization ◽  
X Ray

(E)-4-bromo-5-methoxy-2-((o-tolylimino)methyl)phenol was investigated by experimental and theoretical methodologies. The solid state molecular structure was determined by X-ray diffraction method. All theoretical calculations were performed by density functional theory (DFT) method by using B3LYP/6-31G(d,p) basis set. The titled compound showed the preference of enol form, as supported by X-ray diffraction method. The geometric and molecular properties were compaired for both enol-imine and keto-amine forms for title compound. Stability of the molecule arises from hyperconjugative interactions, charge delocalization and intramolecular hydrogen bond has been analyzed using natural bond orbital (NBO) analysis. Mulliken population method and natural population analysis (NPA) have been studied. Also, condensed Fukui function and relative nucleophilicity indices calculated from charges obtained with orbital charge calculation methods (NPA). Molecular electrostatic potential (MEP) and non linear optical (NLO) properties are also examined.

Synthesis, Molecular Structure, HOMO-LUMO and Spectroscopic Investigation of (E)-1-(2,4-Dichloro-5-fluorophenyl)-3-(2,6-dichlorophenyl)prop-2-en-1-one: A DFT Based Computational Exploration

2020 ◽  
Vol 5 (3) ◽  
pp. 242-248
Author(s):  
Vishnu A. Adole ◽  
Ravindra H. Waghchaure ◽  
Thansing B. Pawar ◽  
Bapu S. Jagdale ◽  
Kailas H. Kapadnis
Keyword(s):  
Molecular Structure ◽  
Spectroscopic Investigation ◽  
Density Functional ◽  
Dft Method ◽  
Basis Set ◽  
Spectroscopic Techniques ◽  
Vibrational Assignments ◽  
Computational Exploration ◽  
Title Molecule ◽  
Homo Lumo

In present study, the synthesis, molecular structure, HOMO-LUMO and spectroscopic investigation of (E)-1-(2,4-dichloro-5-fluorophenyl)-3-(2,6-dichlorophenyl)prop-2-en-1-one (CFPCP) is reported. The structure of the title compound was affirmed based on FTIR, 1H NMR & 13C NMR spectroscopic techniques. The computational examination has been performed by employing density functional theory (DFT) method at B3LYP/6-311G++(d,p) basis set. The geometry of the title molecule has been optimized and established at the same level of theory. The various structural and quantum chemical parameters have been investigated for the title molecule at the 6-311G++(d,p) basis set. To explore the electron distribution, Mulliken atomic charges and molecular electrostatic potential surface are discussed. Besides, vibrational assignments were made and the scaled frequencies have been compared with the experimental frequencies. For the investigation of the absorption wavelength, excitation energy and the oscillator strength TD-DFT method using B3LYP/6-311G++(d,p) basis set is used. Some thermochemical functions have also been investigated using harmonic vibrational frequencies.

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