scholarly journals Clonal structure and high genetic diversity at peripheral populations of Sorbus torminalis (L.) Crantz.

2016 ◽  
Vol 9 (6) ◽  
pp. 892-900 ◽  
Author(s):  
S Jankowska-Wroblewska ◽  
K Meyza ◽  
E Sztupecka ◽  
L Kubera ◽  
J Burczyk
Keyword(s):  
Genetic Diversity ◽  
Peripheral Populations ◽  
Clonal Structure ◽  
High Genetic Diversity ◽  
Sorbus Torminalis

scholarly journals Comparative Genetic Diversity of Pseudomonas stutzeri Genomovars, Clonal Structure, and Phylogeny of the Species

2004 ◽  
Vol 186 (16) ◽  
pp. 5239-5248 ◽  
Author(s):  
Aina Maria Cladera ◽  
Antonio Bennasar ◽  
Maria Barceló ◽  
Jorge Lalucat ◽  
Elena García-Valdés
Keyword(s):  
Genetic Diversity ◽  
Sequence Analysis ◽  
Pseudomonas Stutzeri ◽  
Clonal Structure ◽  
High Genetic Diversity ◽  
Closely Related Species ◽  
16S Ribosomal Dna ◽  
Internally Transcribed Spacer ◽  
Type Strains ◽  
Good Agreement

ABSTRACT A combined phylogenetic and multilocus DNA sequence analysis of 26 Pseudomonas stutzeri strains distributed within the 9 genomovars of the species has been performed. Type strains of the two most closely related species (P. balearica, former genomovar 6, and P. mendocina), together with P. aeruginosa, as the type species of the genus, have been included in the study. The extremely high genetic diversity and the clonal structure of the species were confirmed by the sequence analysis. Clustering of strains in the consensus phylogeny inferred from the analysis of seven nucleotide sequences (16S ribosomal DNA, internally transcribed spacer region 1, gyrB, rpoD, nosZ, catA, and nahH) confirmed the monophyletic origin of the genomovars within the Pseudomonas branch and is in good agreement with earlier DNA-DNA similarity analysis, indicating that the selected genes are representative of the whole genome in members of the species.

CORE AND PERIPHERAL POPULATIONS AND GLOBAL CLIMATE CHANGE

1994 ◽  
Vol 42 (4) ◽  
pp. 331-345 ◽  
Author(s):  
Uriel N. Safriel ◽  
Sergei Volis ◽  
Salit Kark
Keyword(s):  
Climate Change ◽  
Genetic Diversity ◽  
Global Climate Change ◽  
Global Climate ◽  
Phenotypic Variability ◽  
Population Diversity ◽  
Peripheral Populations ◽  
Fluctuating Selection ◽  
High Genetic Diversity ◽  
Chukar Partridge

Environmental conditions outside the periphery of a species' distribution prevent population persistence, hence peripheral populations live under conditions different from those of core populations. Peripheral areas are characterized by variable and unstable conditions, relative to core areas. Peripheral populations are expected to be genetically more variable, since the variable conditions induce fluctuating selection, which maintains high genetic diversity. Alternatively, due to marginal ecological conditions at the periphery, populations there are small and isolated; the within-population diversity is low, but the between-population genetic diversity is high due to genetic drift. It is also likely that peripheral populations evolve resistance to extreme conditions. Thus, peripheral populations rather than core ones may be resistant to environmental extremes and changes, such as global climate change induced by the anthropogenically emitted “greenhouse gases”. They should be treated as a biogenetic resource used for rehabilitation and restoration of damaged ecosystems. Climatic transition zones are characterized by a high incidence of species represented by peripheral populations, and therefore should be conserved now as repositories of these resources, to be used in the future for mitigating undesirable effects of global climate change. Preliminary research revealed high phenotypic variability and high genetic diversity in peripheral populations relative to core populations of wild barley and the chukar partridge, respectively.

scholarly journals Subtype Characterization and Zoonotic Potential of Cryptosporidium felis in Cats in Guangdong and Shanghai, China

Pathogens ◽  
2021 ◽  
Vol 10 (2) ◽  
pp. 89
Author(s):  
Jiayu Li ◽  
Fuxian Yang ◽  
Ruobing Liang ◽  
Sheng Guo ◽  
Yaqiong Guo ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Phylogenetic Analysis ◽  
Genetic Characterization ◽  
Zoonotic Potential ◽  
Common Occurrence ◽  
High Genetic Diversity ◽  
Gp60 Gene ◽  
The Common ◽  
Subtyping Tool

Cryptosporidiumfelis is an important cause of feline and human cryptosporidiosis. However, the transmission of this pathogen between humans and cats remains controversial, partially due to a lack of genetic characterization of isolates from cats. The present study was conducted to examine the genetic diversity of C. felis in cats in China and to assess their potential zoonotic transmission. A newly developed subtyping tool based on a sequence analysis of the 60-kDa glycoprotein (gp60) gene was employed to identify the subtypes of 30 cat-derived C. felis isolates from Guangdong and Shanghai. Altogether, 20 C. felis isolates were successfully subtyped. The results of the sequence alignment showed a high genetic diversity, with 13 novel subtypes and 2 known subtypes of the XIXa subtype family being identified. The known subtypes were previously detected in humans, while some of the subtypes formed well-supported subclusters with human-derived subtypes from other countries in a phylogenetic analysis of the gp60 sequences. The results of this study confirmed the high genetic diversity of the XIXa subtype family of C. felis. The common occurrence of this subtype family in both humans and cats suggests that there could be cross-species transmission of C. felis.

scholarly journals Whole genome sequencing reveals high differentiation, low levels of genetic diversity and short runs of homozygosity among Swedish wels catfish

Heredity ◽  
2021 ◽  
Author(s):  
Axel Jensen ◽  
Mette Lillie ◽  
Kristofer Bergström ◽  
Per Larsson ◽  
Jacob Höglund
Keyword(s):  
Genetic Diversity ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Whole Genome Sequencing Data ◽  
Peripheral Populations ◽  
Whole Genome ◽  
Runs Of Homozygosity ◽  
Sequencing Data ◽  
Isolated Populations ◽  
Native Populations

AbstractThe use of genetic markers in the context of conservation is largely being outcompeted by whole-genome data. Comparative studies between the two are sparse, and the knowledge about potential effects of this methodology shift is limited. Here, we used whole-genome sequencing data to assess the genetic status of peripheral populations of the wels catfish (Silurus glanis), and discuss the results in light of a recent microsatellite study of the same populations. The Swedish populations of the wels catfish have suffered from severe declines during the last centuries and persists in only a few isolated water systems. Fragmented populations generally are at greater risk of extinction, for example due to loss of genetic diversity, and may thus require conservation actions. We sequenced individuals from the three remaining native populations (Båven, Emån, and Möckeln) and one reintroduced population of admixed origin (Helge å), and found that genetic diversity was highest in Emån but low overall, with strong differentiation among the populations. No signature of recent inbreeding was found, but a considerable number of short runs of homozygosity were present in all populations, likely linked to historically small population sizes and bottleneck events. Genetic substructure within any of the native populations was at best weak. Individuals from the admixed population Helge å shared most genetic ancestry with the Båven population (72%). Our results are largely in agreement with the microsatellite study, and stresses the need to protect these isolated populations at the northern edge of the distribution of the species.

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