scholarly journals Comprehensive leaf size traits dataset for seven plant species from digitised herbarium specimen images covering more than two centuries

2021 ◽  
Vol 9 ◽  
Author(s):  
Vamsi Krishna Kommineni ◽  
Susanne Tautenhahn ◽  
Pramod Baddam ◽  
Jitendra Gaikwad ◽  
Barbara Wieczorek ◽  
...  
Keyword(s):  
Environmental Changes ◽  
Leaf Shape ◽  
Leaf Traits ◽  
Herbarium Specimen ◽  
Herbarium Specimens ◽  
Ecological Knowledge ◽  
Natural Environments ◽  
Leaf Trait ◽  
Space And Time ◽  
Climate Change Responses

Morphological leaf traits are frequently used to quantify, understand and predict plant and vegetation functional diversity and ecology, including environmental and climate change responses. Although morphological leaf traits are easy to measure, their coverage for characterising variation within species and across temporal scales is limited. At the same time, there are about 3100 herbaria worldwide, containing approximately 390 million plant specimens dating from the 16th to 21st century, which can potentially be used to extract morphological leaf traits. Globally, plant specimens are rapidly being digitised and images are made openly available via various biodiversity data platforms, such as iDigBio and GBIF. Based on a pilot study to identify the availability and appropriateness of herbarium specimen images for comprehensive trait data extraction, we developed a spatio-temporal dataset on intraspecific trait variability containing 128,036 morphological leaf trait measurements for seven selected species. After scrutinising the metadata of digitised herbarium specimen images available from iDigBio and GBIF (21.9 million and 31.6 million images for Tracheophyta; accessed date December 2020), we identified approximately 10 million images potentially appropriate for our study. From the 10 million images, we selected seven species (Salix bebbiana Sarg., Alnus incana (L.) Moench, Viola canina L., Salix glauca L., Chenopodium album L., Impatiens capensis Meerb. and Solanum dulcamara L.) , which have a simple leaf shape, are well represented in space and time and have high availability of specimens per species. We downloaded 17,383 images. Out of these, we discarded 5779 images due to quality issues. We used the remaining 11,604 images to measure the area, length, width and perimeter on 32,009 individual leaf blades using the semi-automated tool TraitEx. The resulting dataset contains 128,036 trait records. We demonstrate its comparability to trait data measured in natural environments following standard protocols by comparing trait values from the TRY database. We conclude that the herbarium specimens provide valuable information on leaf sizes. The dataset created in our study, by extracting leaf traits from the digitised herbarium specimen images of seven selected species, is a promising opportunity to improve ecological knowledge about the adaptation of size-related leaf traits to environmental changes in space and time.

scholarly journals Rapid leaf trait response to growing-season meteorology in Vitis: Implications for leaf physiognomic paleoclimate reconstructions

2019 ◽  
Author(s):  
Aly Baumgartner ◽  
Michaela Donahoo ◽  
Daniel H. Chitwood ◽  
Daniel J. Peppe
Keyword(s):  
Developmental Stages ◽  
Confounding Factor ◽  
Leaf Shape ◽  
Leaf Traits ◽  
Growing Season ◽  
Meteorological Conditions ◽  
Leaf Trait ◽  
Growing Seasons ◽  
Temperature And Precipitation ◽  
Paleoclimate Reconstructions

ABSTRACTPREMISE OF THE STUDYThe size and shape (physiognomy) of woody, dicotyledonous angiosperm leaves are correlated with climate and these relationships have been used to develop. proxies. These proxies assume that leaf morphology plastically responds to meteorological conditions and that leaf traits change isometrically through development.METHODSWe used Digital Leaf Physiognomy (DiLP) to measure leaf characters of multiple Vitis species from the USDA Germplasm Repository in Geneva, NY from the 2012-2013 and 2014-2015 growing seasons. These growing seasons had different temperature and precipitation.KEY RESULTSWe found three primary results: (1) there were predictable significant differences in leaf characters in leaves of different developmental stages along the vine, (2) there were significant differences in leaf characters in leaves of the same developmental stage between the growing seasons, and (3) there were significant differences in leaf characters between growing seasons.CONCLUSIONSWe found that Vitis leaf shape had the strongest relationship with growing season meteorological conditions in taxa growing in their native range. In addition, leaves have variable phenotypic plasticity along the vine. We interpret that the meteorological signal was strongest in those leaves that have completed allometric expansion. This is significant for leaf physiognomic-paleoclimate proxies because these leaves are most likely to be preserved in leaf litter and reflect the type of leaves included in paleoclimate reconstructions. We found that leaf development does have the potential to be a confounding factor, but it is unlikely to exert a significant influence on analysis due to differential preservation potential.

The Biology of Invasive Alien Plants in Canada. 4. Heracleum mantegazzianum Sommier & Levier

2006 ◽  
Vol 86 (2) ◽  
pp. 569-589 ◽  
Author(s):  
Nicholas A. Page ◽  
Ronald E. Wall ◽  
Stephen J. Darbyshire ◽  
Gerald A. Mulligan
Keyword(s):  
British Columbia ◽  
Urban Areas ◽  
Native Species ◽  
Invasive Plant ◽  
Leaf Shape ◽  
Herbarium Specimens ◽  
Natural Ecosystems ◽  
Alien Plant ◽  
Invasive Alien Plant ◽  
Heracleum Mantegazzianum

Heracleum mantegazzianum (giant hogweed) is an invasive alien plant of management concern in southern Canada where it has escaped from horticulture and established and spread in natural, ruderal, and agricultural ecosystems. It poses a threat to natural ecosystems and human health, and is also a weed in agricultural and urban areas. It is a member of the Carrot family (Apiaceae) and is closely related to the native species Heracleum maximum Bartram (cow-parsnip). It is a monocarpic perennial, which generally flowers in its 3rd or 4th year. Large size, leaf shape, dark reddish pigments in patches on stems and petioles, and fruit characteristics readily distinguish H. mantegazzianum from other plants in Canada. It is increasingly common in riparian areas, floodplains, and forest edges in or near urban areas in southwestern British Columbia and southern Ontario. Based on herbarium specimens, H. mantegazzianum was first recorded in Ontario in 1949, British Columbia in 1964, Nova Scotia in 1980, Quebec in 1990, and New Brunswick in 2000. The development of dense stands of H. mantegazzianum can also reduce the richness of native plants. Contact with H. mantegazzianum can cause phytophotodermatitis, a serious skin inflammation caused by UV photo-activation of furanocoumarins present in the sap. Control methods include herbicide application, mechanical cutting, and animal grazing, but strategies to address seed dispersal and re-establishment from dormant seed must also be adopted. Widespread establishment in southern Canada suggests that eradication is unlikely. However, range expansion and rapid population growth can be prevented through strategic management including public education. Key words: Giant hogweed, Heracleum mantegazzianum, Apiaceae, HERMZ, invasive plant, weed biology, furanocoumarins

Trends in temperate Australian grass breeding and selection

2003 ◽  
Vol 54 (3) ◽  
pp. 211 ◽  
Author(s):  
Rex Oram ◽  
Greg Lodge
Keyword(s):  
Natural Selection ◽  
Introduced Species ◽  
Complex Traits ◽  
Environmental Changes ◽  
Breeding Systems ◽  
Ecological Knowledge ◽  
Native Grasses ◽  
Species Diversification ◽  
Cultivar Development ◽  
Grass Breeding

Current trends in grass cultivar development are reviewed, with respect to the range of species involved, and the objectives and methodology within each species. Extrapolations and predictions are made about future directions and methodologies. It is assumed that selection will necessarily cater for the following environmental changes: (1) higher year-round temperatures, higher variability of rainfall incidence, and lower total winter and spring rainfall along the south of the continent; (2) higher nutrient and lime inputs as land utilisation intensifies; and (3) the grazing management requirements of the important pasture components will be increasingly defined and met in practice.The 'big four' species, perennial ryegrass, phalaris, cocksfoot and tall fescue, will continue to be the most widely sown species in temperate regions for many decades, with the latter 3 increasing most in area and genetic differentiation. However, species diversification will continue, especially with native grasses, legumes, and shrubs from fertile regions of Australia and exotics from little-explored parts of the world, such as South Africa, western North and South America, coastal Caucasus, and Iraq–Iran. By contrast, the recent high rate of species diversification in the tropics and subtropics will probably give way to a much lower rate of cultivar development by refinement and diversification within the established species. Domestication of native grasses will continue for amenity, recreational, land protection, and grazing purposes. As seed harvesting technologies and ecological knowledge improve, natural stands will become increasingly important as local sources of seed. It is suggested that many native grasses have been greatly changed by natural selection so as to withstand strong competition from introduced species under conditions of higher soil fertility and grazing pressure. Conversely, some introduced species are being selected consciously and naturally to persist in regions with irregular rainfall and less fertile soils. Therefore, the distinction between native and introduced grasses may be disappearing, and many populations of native species could now be as foreign to the habitats of pre-European settlement as are populations of introduced species that have been evolving here for 50–200 years. Methods used for genetic improvement will continue to be selection among both overseas accessions and the many native and introduced populations that have responded to natural selection in Australia. As well, there will be deliberate recurrent crossing and selection programs in both native and introduced species for specific purposes and environments. Increasingly, molecular biology methods will complement traditional ones, at first by the provision of DNA markers to assist the selection of complex traits, and for proving distinctness to obtain Plant Breeders' Rights for new cultivars. Later, genetic engineering will be used to manipulate nutritive value, resistance to fungal and viral diseases, and breeding systems, especially cytoplasmic male sterility and apomixis, to utilise heterosis in hybrid cultivars of grasses, particularly for dairying and intensive meat production.Areas where the practice and management of grass breeding and selection programs could be improved are highlighted throughout the review, and reiterated in a concluding statement. Most problems appear to stem from inadequate training in population ecology, population genetics, evolution, and quantitative inheritance.

scholarly journals Pampean lizard assemblage from subtropical Brazil: a temporal analysis

2011 ◽  
Vol 83 (4) ◽  
pp. 1345-1358 ◽  
Author(s):  
Gisele R. Winck ◽  
Tiago G. Dos Santos ◽  
Sonia Z. Cechin
Keyword(s):  
Environmental Changes ◽  
Seasonal Pattern ◽  
Natural Populations ◽  
Temporal Analysis ◽  
Natural Environments ◽  
Human Occupation ◽  
Environmental Disturbances ◽  
Pampa Biome ◽  
History Of ◽  
Recruitment Period

The increasing human occupation of natural environments is one of the greatest threats to biodiversity. To mitigate the negative anthropogenic effects, it is necessary to understand the characteristics of natural populations and the natural history of species. A study was conducted with an assemblage of lizards from a disturbed area of the Pampa biome, from February 2001 to January 2004. The assemblage showed a unimodal seasonal pattern, with the recruitment period occurring during the warmer months. The captures were seasonal for two of the three monitored years, and concentrated within warmer months. The minimum temperature explained the number of catches for the assemblage as a whole. However, when the species were analyzed individually, the temperature only explained the seasonal occurrence of Teius oculatus. The abundance of species was significantly different in the third year of study for Cercosaura schreibersii and Ophiodes striatus. This latter species was no longer registered in the study area from May 2003 until the end of the study. Therefore, O. striatus may be more sensitive to environmental changes, considering the events of change in vegetation during the study. With frequent and increasing environmental disturbances, it is necessary to take conservation measures and encourage the increase of knowledge on Pampean lizards.

Setting the scene and how to read the book

2018 ◽  
pp. 3-10
Keyword(s):  
Public Health ◽  
Human Health ◽  
Urban Areas ◽  
Environmental Changes ◽  
Natural Environments

Human health depends on nature. This is a basic statement on which the fundaments of this book rest. Functional and diverse ecosystems, from which we derive fresh air and water, soil to grow food, timber to build houses, settings for play and recreation, are a prerequisite for human health and survival. The latest centuries’ unprecedented speed in societal and environmental changes has come to threaten the health of natural environments and by this threatening our own health. While we cannot, and should not, reverse the trend of sound development, we need to find better and healthier ways to interact with nature—in urban as well as in non-urban areas. This chapter will give a background to this book’s development and put the topic of nature and public health into a broad, outreaching context. It also presents an overview of the book’s full content, giving a brief description of each chapter.

scholarly journals Predicting Leaf Trait Variability as a Functional Descriptor of the Effect of Climate Change in Three Perennial Grasses

Diversity ◽  
2019 ◽  
Vol 11 (12) ◽  
pp. 233
Author(s):  
Marwa Hamdani ◽  
Khouloud Krichen ◽  
Mohamed Chaieb
Keyword(s):  
Functional Traits ◽  
Leaf Traits ◽  
Perennial Grasses ◽  
Arid Ecosystems ◽  
Leaf Trait ◽  
Grassland Species ◽  
Dimensional Shrinkage ◽  
Potential Link ◽  
Dehydration Avoidance ◽  
Stipa Lagascae

Aims of the study: The most important trends of the current climate variability is the scarcity of rains that affects arid ecosystems. The aim of this study was to explore the variability of leaf functional traits by which grassland species survive and resist drought and to investigate the potential link between resource use efficiency and water scarcity resistance strategies of species. Methods: Three grasses (Cenchrus ciliaris (C4), Stipa parviflora and Stipa lagascae (C3)) were established in a randomized block consisting of eleven replications. The seedlings were kept under increasing levels of water stress. In addition to their functional leaf traits, the rate of water loss and dimensional shrinkage were also measured. Key Results: Thicker and denser leaves, with higher dry matter contents, low specific leaf area and great capacity of water retention are considered among the grasses’ strategies of dehydration avoidance. Significant differences between the means of the functional traits were obtained. Furthermore, strong correlations among leaf traits were also detected (Spearman’s r exceeding 0.8). Conclusions: The results provide evidence that the studied grasses respond differently to drought by exhibiting a range of interspecific functional strategies that may ameliorate the resilience of grassland species communities under extreme drought events.

scholarly journals New handbook for standardised measurement of plant functional traits worldwide

2013 ◽  
Vol 61 (3) ◽  
pp. 167 ◽  
Author(s):  
N. Pérez-Harguindeguy ◽  
S. Díaz ◽  
E. Garnier ◽  
S. Lavorel ◽  
H. Poorter ◽  
...  
Keyword(s):  
Functional Traits ◽  
Environmental Changes ◽  
Plant Traits ◽  
Leaf Traits ◽  
Plant Functional Traits ◽  
Trophic Levels ◽  
Evolutionary Patterns ◽  
Ecosystem Properties ◽  
Species Invasions ◽  
Wide Range

Plant functional traits are the features (morphological, physiological, phenological) that represent ecological strategies and determine how plants respond to environmental factors, affect other trophic levels and influence ecosystem properties. Variation in plant functional traits, and trait syndromes, has proven useful for tackling many important ecological questions at a range of scales, giving rise to a demand for standardised ways to measure ecologically meaningful plant traits. This line of research has been among the most fruitful avenues for understanding ecological and evolutionary patterns and processes. It also has the potential both to build a predictive set of local, regional and global relationships between plants and environment and to quantify a wide range of natural and human-driven processes, including changes in biodiversity, the impacts of species invasions, alterations in biogeochemical processes and vegetation–atmosphere interactions. The importance of these topics dictates the urgent need for more and better data, and increases the value of standardised protocols for quantifying trait variation of different species, in particular for traits with power to predict plant- and ecosystem-level processes, and for traits that can be measured relatively easily. Updated and expanded from the widely used previous version, this handbook retains the focus on clearly presented, widely applicable, step-by-step recipes, with a minimum of text on theory, and not only includes updated methods for the traits previously covered, but also introduces many new protocols for further traits. This new handbook has a better balance between whole-plant traits, leaf traits, root and stem traits and regenerative traits, and puts particular emphasis on traits important for predicting species’ effects on key ecosystem properties. We hope this new handbook becomes a standard companion in local and global efforts to learn about the responses and impacts of different plant species with respect to environmental changes in the present, past and future.

scholarly journals Values Mapping with Latino Forest Users: Contributing to the Dialogue on Multiple Land Use Conflict Management

2014 ◽  
Vol 36 (1) ◽  
pp. 33-37
Author(s):  
Kelly Biedenweg ◽  
Lee Cerveny ◽  
Rebecca McLain
Keyword(s):  
Resource Management ◽  
Natural Resource Management ◽  
Natural Resource ◽  
Ecological Knowledge ◽  
Natural Environments ◽  
Industrialized Countries ◽  
Gis Technology ◽  
Resource Ownership ◽  
Forest Users ◽  
Management Priorities

Values mapping that represents how humans associate with natural environments is useful for several purposes, including recognizing and addressing different perceptions of natural resource ownership and management priorities, documenting traditional ecological knowledge, and spatially identifying the public's perception of economic and non-economic services provided by natural resources (McLain et al. 2013). The majority of this work has been conducted in developing countries and with disenfranchised communities, where participatory mapping associated with natural resource management is more widely practiced. As access to GIS technology has expanded, however, several projects have tested the benefits of values mapping for natural resource management decisions in industrialized countries (e.g., Brown 2005; Klain and Chan 2012). This article discusses one such effort: the use of spatial values mapping to incorporate the concerns of Latino forest users into federal and state policies on the Olympic Peninsula in Washington State.

scholarly journals Tuning environmental timescales to evolve and maintain generalists

2020 ◽  
Vol 117 (23) ◽  
pp. 12693-12699 ◽  
Author(s):  
Vedant Sachdeva ◽  
Kabir Husain ◽  
Jiming Sheng ◽  
Shenshen Wang ◽  
Arvind Murugan
Keyword(s):  
Neutralizing Antibodies ◽  
Environmental Changes ◽  
Dynamic Environments ◽  
Affinity Maturation ◽  
Natural Environments ◽  
Broadly Neutralizing Antibodies ◽  
Complex Dynamic ◽  
Changing Environments ◽  
Cell Affinity ◽  
Do So

Natural environments can present diverse challenges, but some genotypes remain fit across many environments. Such “generalists” can be hard to evolve, outcompeted by specialists fitter in any particular environment. Here, inspired by the search for broadly neutralizing antibodies during B cell affinity maturation, we demonstrate that environmental changes on an intermediate timescale can reliably evolve generalists, even when faster or slower environmental changes are unable to do so. We find that changing environments on timescales comparable with evolutionary transients in a population enhance the rate of evolving generalists from specialists, without enhancing the reverse process. The yield of generalists is further increased in more complex dynamic environments, such as a “chirp” of increasing frequency. Our work offers design principles for how nonequilibrium fitness “seascapes” can dynamically funnel populations to genotypes unobtainable in static environments.

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