scholarly journals Investigations in the boletes (Boletaceae) of southeastern USA: four novel species and three novel combinations

mycosphere ◽  
2021 ◽  
Vol 12 (1) ◽  
pp. 1038-1076
Author(s):  
A Farid
Keyword(s):  
Novel Species ◽  
Southeastern Usa

Urbanization impacts on production and recruitment of Fundulus heteroclitus in salt marsh creeks

2020 ◽  
Vol 645 ◽  
pp. 187-204
Author(s):  
PJ Rudershausen ◽  
JA Buckel
Keyword(s):  
Salt Marsh ◽  
Salt Marshes ◽  
Fundulus Heteroclitus ◽  
Multiple Factor Analysis ◽  
Southeastern Usa ◽  
Density Dependent ◽  
Dependent Relationship ◽  
Juvenile Abundance ◽  
The Relationship ◽  
Throw Trap

It is unclear how urbanization affects secondary biological production in estuaries in the southeastern USA. We estimated production of larval/juvenile Fundulus heteroclitus in salt marsh areas of North Carolina tidal creeks and tested for factors influencing production. F. heteroclitus were collected with a throw trap in salt marshes of 5 creeks subjected to a range of urbanization intensities. Multiple factor analysis (MFA) was used to reduce dimensionality of habitat and urbanization effects in the creeks and their watersheds. Production was then related to the first 2 dimensions of the MFA, month, and year. Lastly, we determined the relationship between creek-wide larval/juvenile production and abundance from spring and abundance of adults from autumn of the same year. Production in marsh (g m-2 d-1) varied between years and was negatively related to the MFA dimension that indexed salt marsh; higher rates of production were related to creeks with higher percentages of marsh. An asymptotic relationship was found between abundance of adults and creek-wide production of larvae/juveniles and an even stronger density-dependent relationship was found between abundance of adults and creek-wide larval/juvenile abundance. Results demonstrate (1) the ability of F. heteroclitus to maintain production within salt marsh in creeks with a lesser percentage of marsh as long as this habitat is not removed altogether and (2) a density-dependent link between age-0 production/abundance and subsequent adult recruitment. Given the relationship between production and marsh area, natural resource agencies should consider impacts of development on production when permitting construction in the southeastern USA.

IDENTIFICATION AND PHYLOGENETIC ANALYSIS OF SOUTHEASTERN USA EARTHWORM SPECIES USING 16S RDNA AND CO1 SEQUENCES

2018 ◽  
Vol 4 (3) ◽  
pp. 80-85
Author(s):  
YU.А. LEONTIEVA ◽  
◽  
A.G. NALIAN ◽  
G.A. DAMOFF ◽  
A.V. MARTYNOVA-VAN KLEY ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
16S Rdna ◽  
Southeastern Usa ◽  
Earthworm Species

Soil Organic Matter Fractions under Managed Pine Plantations of the Southeastern USA

2004 ◽  
Vol 68 (3) ◽  
pp. 950 ◽  
Author(s):  
Marietta E. Echeverría ◽  
Daniel Markewitz ◽  
Lawrence A. Morris ◽  
Ronald L. Hendrick
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Pine Plantations ◽  
Southeastern Usa ◽  
Soil Organic Matter Fractions ◽  
Organic Matter Fractions

Phylogeny of cercosporoid fungi (Mycosphaerellaceae, Mycosphaerellales) from Hawaii and New York reveals novel species within the Cercospora beticola complex

2021 ◽  
Vol 20 (3) ◽  
pp. 261-287
Author(s):  
Niloofar Vaghefi ◽  
Roger G. Shivas ◽  
Sandeep Sharma ◽  
Scot C. Nelson ◽  
Sarah J. Pethybridge
Keyword(s):  
New York ◽  
Novel Species ◽  
Cercospora Beticola ◽  
Cercosporoid Fungi

scholarly journals Chimeric rat/human neurotensin receptors localize a region of the receptor sensitive to binding of a novel, species-specific picomolar affinity peptide

1996 ◽  
Vol 271 (36) ◽  
pp. 22280
Author(s):  
Bernadette Cusak ◽  
Karen Groshan ◽  
Daniel J. McCormick ◽  
Yuan-Ping Pang ◽  
Robin Perry ◽  
...  
Keyword(s):  
Novel Species ◽  
Neurotensin Receptors ◽  
Affinity Peptide ◽  
Species Specific

scholarly journals Pseudomonas eucalypticola sp. nov., a producer of antifungal agents isolated from Eucalyptus dunnii leaves

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Yujing Liu ◽  
Zhang Song ◽  
Hualong Zeng ◽  
Meng Lu ◽  
Weiyao Zhu ◽  
...  
Keyword(s):  
Dna Hybridization ◽  
Antifungal Agents ◽  
Novel Species ◽  
Phytopathogenic Fungi ◽  
Strictly Aerobic ◽  
Rrna Sequence ◽  
16S Rrna Sequence ◽  
Eucalyptus Dunnii ◽  
16S Rrna Sequence Analysis

AbstractPseudomonas are ubiquitously occurring microorganisms and are known for their ability to produce antimicrobials. An endophytic bacterial strain NP-1 T, isolated from Eucalyptus dunnii leaves, exhibits antifungal properties against five tested phytopathogenic fungi. The strain is a Gram-negative rod-shaped bacterium containing a single polar flagellum. It is strictly aerobic, grows at 4–37 °C, 2–5% NaCl, and pH 3–7. The 16S rRNA sequence analysis showed that NP-1 T belongs to the Pseudomonas genus. Phylogenetic analysis based on four concatenated partial genes (16S rDNA, gyrB, rpoB and rpoD) and the phylogenomic tree indicated that NP-1 T belongs to Pseudomonas fluorescens lineage but is distinct from any known Pseudomonas species. The G + C mol % of NP-1 T genome is 63.96, and the differences between NP-1 T and related species are larger than 1. The digital DNA-DNA hybridization and tetranucleotide signatures are 23.8 and 0.97, which clearly separates strain NP-1 T from its closest neighbours, Pseudomonas coleopterorum and Pseudomonas rhizosphaerae. Its phenotypic and chemotaxonomic features confirmed its differentiation from related taxa. The results from this polyphasic approach support the classification of NP-1 T as a novel species of Pseudomonas, and the name of Pseudomonas eucalypticola is thus proposed for this strain, whose type is NP-1 T (= CCTCC M2018494T = JCM 33572 T).

scholarly journals Multiple Types of Novel Enteric Bopiviruses (Picornaviridae) with the Possibility of Interspecies Transmission Identified from Cloven-Hoofed Domestic Livestock (Ovine, Caprine and Bovine) in Hungary

Viruses ◽  
2021 ◽  
Vol 13 (1) ◽  
pp. 66
Author(s):  
Zoltán László ◽  
Péter Pankovics ◽  
Gábor Reuter ◽  
Attila Cságola ◽  
Ádám Bálint ◽  
...  
Keyword(s):  
Novel Species ◽  
Phylogenetic Analyses ◽  
Interspecies Transmission ◽  
Background Information ◽  
Type Ii ◽  
Rt Pcr ◽  
Faecal Samples ◽  
The Family ◽  
Domestic Livestock

Most picornaviruses of the family Picornaviridae are relatively well known, but there are certain “neglected” genera like Bopivirus, containing a single uncharacterised sequence (bopivirus A1, KM589358) with very limited background information. In this study, three novel picornaviruses provisionally called ovipi-, gopi- and bopivirus/Hun (MW298057-MW298059) from enteric samples of asymptomatic ovine, caprine and bovine respectively, were determined using RT-PCR and dye-terminator sequencing techniques. These monophyletic viruses share the same type II-like IRES, NPGP-type 2A, similar genome layout (4-3-4) and cre-localisations. Culture attempts of the study viruses, using six different cell lines, yielded no evidence of viral growth in vitro. Genomic and phylogenetic analyses show that bopivirus/Hun of bovine belongs to the species Bopivirus A, while the closely related ovine-origin ovipi- and caprine-origin gopivirus could belong to a novel species “Bopivirus B” in the genus Bopivirus. Epidemiological investigation of N = 269 faecal samples of livestock (ovine, caprine, bovine, swine and rabbit) from different farms in Hungary showed that bopiviruses were most prevalent among <12-month-old ovine, caprine and bovine, but undetectable in swine and rabbit. VP1 capsid-based phylogenetic analyses revealed the presence of multiple lineages/genotypes, including closely related ovine/caprine strains, suggesting the possibility of ovine–caprine interspecies transmission of certain bopiviruses.

scholarly journals Mosquito species identification using convolutional neural networks with a multitiered ensemble model for novel species detection

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Adam Goodwin ◽  
Sanket Padmanabhan ◽  
Sanchit Hira ◽  
Margaret Glancey ◽  
Monet Slinowsky ◽  
...  
Keyword(s):  
Neural Networks ◽  
Species Identification ◽  
Convolutional Neural Networks ◽  
Novel Species ◽  
Novelty Detection ◽  
Mosquito Species ◽  
Image Database ◽  
Closed Set ◽  
Open Set

AbstractWith over 3500 mosquito species described, accurate species identification of the few implicated in disease transmission is critical to mosquito borne disease mitigation. Yet this task is hindered by limited global taxonomic expertise and specimen damage consistent across common capture methods. Convolutional neural networks (CNNs) are promising with limited sets of species, but image database requirements restrict practical implementation. Using an image database of 2696 specimens from 67 mosquito species, we address the practical open-set problem with a detection algorithm for novel species. Closed-set classification of 16 known species achieved 97.04 ± 0.87% accuracy independently, and 89.07 ± 5.58% when cascaded with novelty detection. Closed-set classification of 39 species produces a macro F1-score of 86.07 ± 1.81%. This demonstrates an accurate, scalable, and practical computer vision solution to identify wild-caught mosquitoes for implementation in biosurveillance and targeted vector control programs, without the need for extensive image database development for each new target region.

Sign in / Sign up

Export Citation Format

Share Document