Impact of litter quantity on the soil bacteria community during the decomposition of Quercus wutaishanica litter

Litter Addition ◽

Normal Quantity ◽

Soil Bacterial ◽

Litter Quantity

The forest ecosystem is the main component of terrestrial ecosystems. The global climate and the functions and processes of soil microbes in the ecosystem are all influenced by litter decomposition. The effects of litter decomposition on the abundance of soil microorganisms remain unknown. Here, we analyzed soil bacterial communities during the litter decomposition process in an incubation experiment under treatment with different litter quantities based on annual litterfall data (normal quantity, 200 g/(m2/yr); double quantity, 400 g/(m2/yr) and control, no litter). The results showed that litter quantity had significant effects on soil carbon fractions, nitrogen fractions, and bacterial community compositions, but significant differences were not found in the soil bacterial diversity. The normal litter quantity enhanced the relative abundance of Actinobacteria and Firmicutes and reduced the relative abundance of Bacteroidetes, Plantctomycets and Nitrospiare. The Beta-, Gamma-, and Deltaproteobacteria were significantly less abundant in the normal quantity litter addition treatment, and were subsequently more abundant in the double quantity litter addition treatment. The bacterial communities transitioned from Proteobacteria-dominant (Beta-, Gamma-, and Delta) to Actinobacteria-dominant during the decomposition of the normal quantity of litter. A cluster analysis showed that the double litter treatment and the control had similar bacterial community compositions. These results suggested that the double quantity litter limited the shift of the soil bacterial community. Our results indicate that litter decomposition alters bacterial dynamics under the accumulation of litter during the vegetation restoration process, which provides important significant guidelines for the management of forest ecosystems.

Impact of litter quantity on the soil bacteria community during the decomposition of Quercus wutaishanica litter

PeerJ ◽

10.7717/peerj.3777 ◽

2017 ◽

Vol 5 ◽

pp. e3777 ◽

Cited By ~ 10

Author(s):

Quanchao Zeng ◽

Yang Liu ◽

Shaoshan An

Keyword(s):

Bacterial Community ◽

Litter Decomposition ◽

Relative Abundance ◽

Bacterial Communities ◽

Terrestrial Ecosystems ◽

Litter Addition ◽

Normal Quantity ◽

Soil Bacterial ◽

Litter Quantity

The forest ecosystem is the main component of terrestrial ecosystems. The global climate and the functions and processes of soil microbes in the ecosystem are all influenced by litter decomposition. The effects of litter decomposition on the abundance of soil microorganisms remain unknown. Here, we analyzed soil bacterial communities during the litter decomposition process in an incubation experiment under treatment with different litter quantities based on annual litterfall data (normal quantity, 200 g/(m2/yr); double quantity, 400 g/(m2/yr) and control, no litter). The results showed that litter quantity had significant effects on soil carbon fractions, nitrogen fractions, and bacterial community compositions, but significant differences were not found in the soil bacterial diversity. The normal litter quantity enhanced the relative abundance of Actinobacteria and Firmicutes and reduced the relative abundance of Bacteroidetes, Plantctomycets and Nitrospiare. The Beta-, Gamma-, and Deltaproteobacteria were significantly less abundant in the normal quantity litter addition treatment, and were subsequently more abundant in the double quantity litter addition treatment. The bacterial communities transitioned from Proteobacteria-dominant (Beta-, Gamma-, and Delta) to Actinobacteria-dominant during the decomposition of the normal quantity of litter. A cluster analysis showed that the double litter treatment and the control had similar bacterial community compositions. These results suggested that the double quantity litter limited the shift of the soil bacterial community. Our results indicate that litter decomposition alters bacterial dynamics under the accumulation of litter during the vegetation restoration process, which provides important significant guidelines for the management of forest ecosystems.

Inconsistent response of soil bacterial and fungal communities in aggregates to litter decomposition during short-term incubation

PeerJ ◽

10.7717/peerj.8078 ◽

2019 ◽

Vol 7 ◽

pp. e8078 ◽

Cited By ~ 2

Author(s):

Jingjing Li ◽

Chao Yang

Keyword(s):

Microbial Communities ◽

Carbon Storage ◽

Litter Decomposition ◽

Relative Abundance ◽

Carbon Emissions ◽

Aggregate Size ◽

Shannon Index ◽

Fungal Communities ◽

Litter Addition ◽

Background Soil aggregate-size classes and microbial communities within the aggregates are important factors regulating the soil organic carbon (SOC) turnover. However, the response of soil bacterial and fungal communities in aggregates to litter decomposition in different aggregate-size classes is poorly understand. Methods Soil samples from un-grazed natural grassland were separated into four dry aggregate classes of different sizes (2–4 mm, 1–2 mm, 0.25–1 mm and <0.25 mm). Two types of plant litter (leaf and stem) of Leymus chinensis were added to each of the four aggregate class samples. The CO2 release rate, SOC storage and soil microbial communities were measured at the end of the 56-day incubation. Results The results showed that the 1–2 mm aggregate had the highest bacterial Shannon and CO2 release in CK and leaf addition treatments, and the SOC in the <0.25 mm aggregate was higher than that in the others across the treatments. The relative abundance of Ascomycota was higher in the 2–4 mm and <0.25 mm aggregates than in the 1–2 mm and 0.25–1 mm aggregates in the treatment without litter addition, and the relative abundance of Aphelidiomycota was lower in the 2–4 mm and <0.25 mm aggregates than in the 1–2 mm and 0.25–1 mm aggregates. Also, litter addition increased the relative abundance of Proteobacteria and Bacteroidetes, but decreased the relative abundance of Acidobacteria, Gemmatimonadetes, and Actinobacteria. The relative abundance of Ascomycota and Aphelidiomycota increased by more than 10% following leaf litter addition. The bacterial Shannon index had a significantly positive and direct effect on SOC concentration and CO2 release, while the fungal Shannon index was significantly correlated with SOC concentration. Our results indicate that the soil bacterial diversity contributes positively to both carbon emissions and carbon storage, whereas soil fungal diversity can promote carbon storage and decrease carbon emissions.

Identifying the Biogeographic Patterns of Rare and Abundant Bacterial Communities Using Different Primer Sets on the Loess Plateau

Microorganisms ◽

10.3390/microorganisms9010139 ◽

2021 ◽

Vol 9 (1) ◽

pp. 139

Author(s):

Quanchao Zeng ◽

Shaoshan An

Keyword(s):

Community Structure ◽

Environmental Factors ◽

Bacterial Community ◽

Bacterial Diversity ◽

Bacterial Communities ◽

Land Uses ◽

The Loess Plateau ◽

Soil Bacterial ◽

Rare Bacteria

High-throughput sequencing is commonly used to study soil microbial communities. However, different primers targeting different 16S rRNA hypervariable regions often generate different microbial communities and result in different values of diversity and community structure. This study determined the consequences of using two bacterial primers (338f/806r, targeting the V3-V4 region, and 520f/802r, targeting the V4 region) to assess bacterial communities in the soils of different land uses along a latitudinal gradient. The results showed that the variations in the soil bacterial diversity in different land uses were more evident based on the former pair. The statistical results showed that land use had no significant impact on soil bacterial diversity when primer pair 520f/802r was used. In contrast, when primer pair 338f/806r was used, the cropland and orchard soils had significantly higher operational taxonomic units (OTUs) and Shannon diversity index values than those of the shrubland and grassland soils. Similarly, the soil bacterial diversity generated by primer pair 338f/806r was significantly impacted by mean annual precipitation, soil total phosphorus (TP), soil total nitrogen (TN), and soil available phosphorus (AVP), while the soil bacterial diversity generated by primer pair 520f/802r showed no significant correlations with most of these environmental factors. Multiple regression models indicated that soil pH and soil organic carbon (SOC) shaped the soil bacterial community structure on the Loess Plateau regardless of what primer pair was used. Climatic conditions mainly affected the diversity of rare bacteria. Abundant bacteria are more sensitive than rare bacteria to environmental changes. Very little of the variation in the rare bacterial community was explained by environmental factors or geographic distance, suggesting that the communities of rare bacteria are unpredictable. The distributions of the abundant taxa were mainly determined by variations in environmental factors.

The impacts of a biochar application on selected soil properties and bacterial communities in an Albic Clayic Luvisol

Soil and Water Research ◽

10.17221/19/2019-swr ◽

2020 ◽

Vol 15 (No. 2) ◽

pp. 85-92

Author(s):

Chengsen Zhao ◽

Qingqing Xu ◽

Lin Chen ◽

Xiaoqing Li ◽

Yutian Meng ◽

...

Keyword(s):

Community Structure ◽

Bacterial Community ◽

Soil Properties ◽

Bulk Density ◽

Relative Abundance ◽

Bacterial Communities ◽

Bacterial Community Structure ◽

Soil Layer ◽

Total Carbon ◽

In this four-year study, we focused on the impacts of a biochar application on physicochemical soil properties (soil total carbon, total nitrogen, total potassium, total phosphorus, available nitrogen, available potassium, available phosphorus, pH, bulk density and moisture) and bacterial communities in an Albic Clayic Luvisol. The biochar was applied to plots only once with rates of 0, 10, 20 and 30 t/ha at the beginning of the experiment. The soil samples were collected from the surface (0–10 cm) and second depth (10–20 cm) soil layers after four years. The results showed that that the soil total carbon (TC) and pH increased, but the soil bulk density (BD) decreased with the biochar application. The soil bacterial sequences determined by the Illumina MiSeq method resulted in a decrease in the relative abundance of Acidobacteria, but an increase in the Actinobacteria with the biochar application. The bacterial diversity was significantly influenced by the biochar application. The nonmetric multidimensional scaling (NMDS) and canonical correspondence analysis (CCA) indicated that the soil bacterial community structure was affected by both the biochar addition and the soil depth. The Mantel test analysis indicated that the bacterial community structure significantly correlated to a soil with a pH (r = 0.525, P = 0.001), bulk density (r = 0.539, P = 0.001) and TC (r = 0.519, P = 0.002) only. In addition, most of the differences in the soil properties, bacterial relative abundance and community composition in the second depth soil layer were greater than those in the surface soil layer.

Different Responses of Soil Bacterial Communities to Nitrogen Addition in Moss Crust

Frontiers in Microbiology ◽

10.3389/fmicb.2021.665975 ◽

2021 ◽

Vol 12 ◽

Author(s):

Tingwen Huang ◽

Weiguo Liu ◽

Xi-En Long ◽

Yangyang Jia ◽

Xiyuan Wang ◽

...

Keyword(s):

Bacterial Community ◽

Relative Abundance ◽

Bacterial Communities ◽

N Deposition ◽

Soil Bacterial Community ◽

Rrna Genes ◽

N Addition ◽

Soil Bacterial Communities ◽

Soil Bacterial ◽

Moss Crust

Bacterial communities in soil serve an important role in controlling terrestrial biogeochemical cycles and ecosystem processes. Increased nitrogen (N) deposition in Northwest China is generating quantifiable changes in many elements of the desert environment, but the impacts of N deposition, as well as seasonal variations, on soil bacterial community composition and structure are poorly understood. We used high-throughput sequencing of bacterial 16S rRNA genes from Gurbantünggüt Desert moss crust soils to study the impacts of N addition on soil bacterial communities in March, May, and November. In November, we discovered that the OTU richness and diversity of soil bacterial community dropped linearly with increasing N input. In November and March, the diversity of the soil bacterial community decreased significantly in the medium-N and high-N treatments. In May, N addition caused a substantial change in the makeup of the soil bacterial composition, while the impacts were far less apparent in November and March. Furthermore, the relative abundance of major bacterial phyla reacted non-linearly to N addition, with high-N additions decreasing the relative richness of Proteobacteria, Bacteroidetes, and Acidobacteria while increasing the relative abundance of Actinobacteria and Chloroflexi. We also discovered that seasonality, as characterized by changes in soil moisture, pH, SOC, and AK content, had a significant impact on soil bacterial communities. Significant variations in the makeup of the community were discovered at the phylum and genus levels throughout the various months. In May, the variety of soil bacterial community was at its peak. Further investigation showed that the decrease in soil bacterial diversity was mostly attributed to a drop in soil pH. These results indicated that the impact of N deposition on the soil bacterial community was seasonally dependent, suggesting that future research should evaluate more than one sample season at the same time.

Soil Bacterial Community Responses to N Application and Warming in a Qinghai-Tibetan Plateau Alpine Steppe

Frontiers in Ecology and Evolution ◽

10.3389/fevo.2021.709518 ◽

2021 ◽

Vol 9 ◽

Author(s):

Zhiyuan Mu ◽

Shikui Dong ◽

Yaoming Li ◽

Shuai Li ◽

Hao Shen ◽

...

Keyword(s):

Tibetan Plateau ◽

Bacterial Community ◽

Bacterial Communities ◽

Nitrogen Application ◽

Short Term ◽

N Application ◽

Soil Bacterial Communities ◽

Alpine Steppe ◽

Nitrogen deposition and climate warming can alter soil bacterial communities. However, the response of soil bacteria in an alpine steppe to these changes is largely unknown. In this study, a field experiment was performed on the northeastern Qinghai-Tibetan Plateau to determine the changes in soil bacterial communities of alpine steppes in response to nitrogen application and warming. The experiment consisted of four treatments, namely no-N application with no-warming (CK), N application (8 kg N ha−1 year−1) with no-warming (N), warming with no-N application (W), and N application (8 kg N ha−1 year−1) with warming (W&N). This study aimed to investigate (1) the changes in soil bacterial diversity and community structure under simulated nitrogen deposition and warming conditions, and (2) the key environmental factors responsible for these changes. Based on the results, soil bacterial diversity and community composition did not change significantly in the short term. Warming had a significant effect on overall bacterial composition, rare species composition, and individual bacterial taxa. Besides, the interaction between nitrogen application and warming had a significant effect on community β-diversity. Above-ground plant variables were highly correlated with bacterial community characteristics. Nitrogen application and warming did not significantly alter the distribution range of the bacterial community. Overall, this study suggests that soil bacterial communities can remain relatively stable at the level of simulated nitrogen application and warming and that short-term climatic changes may have no significant impacts on soil bacterial communities.

Combined Foliar and Soil Selenium Fertilizer Improves Selenium Transport in Oats and the Diversity of the Bacterial Community in Rhizosphere Soil

10.21203/rs.3.rs-385095/v1 ◽

2021 ◽

Author(s):

Junhui Li ◽

Wenping Yang ◽

Anna Guo ◽

Sheng Yang ◽

Jie Chen ◽

...

Keyword(s):

Organic Matter ◽

Bacterial Community ◽

Relative Abundance ◽

Bacterial Communities ◽

Rhizosphere Soil ◽

Fertilizer Application ◽

Combined Application ◽

Decomposition Of Organic Matter ◽

Soil Bacterial ◽

Foliar S

Abstract Reasonable application of selenium (Se) fertilizer is beneficial for improving Se contents in grains and can affect soil ecology. No study has compared Se fertilizer application methods on biofortification, yield, and soil bacterial community. This study investigated the effects of topsoil (T), foliar (S), and soil+foliar (TS) application of Se fertilizer on oats. TS treatment significantly increased oat yield compared with the control and S. The Se content in grains was increased in the order of TS > S > T. T and TS increased the nutrients, soil organic matter, activities of urease, alkaline phosphatase, and sucrose, as well as the diversity and abundance of soil bacterial communities. According to PCA analysis, TS and T increased the relative abundance of bacteria involved in the decomposition of organic matter, such as Proteobacteria, Chloroflexi, and Bacteroidetes, while reduced Granulicella, Bacillus, Raoultella, Lactococcus, Klebsiella, and Pseudomonas. Furthermore, TS significantly increased the relative abundance of Aciditeromonas, Gemmatimonas, Geobacter, and Thiobacter. While, T significantly increased the abundance of Lysobacter, Holophaga, Candidatus-Koribacter, Povalibacter, and Pyrinomonas. S did not significantly change the bacterial communities. The redundancy analysis revealed that soil nutrients and enzyme activities were positively correlated with the abundance of Actinobacteria, Acidobacteria, Gemmatimonadetes, Bacteroidetes, Planctomycetes, and Chloroflexi, but negatively correlated with the abundance of Proteobacteria and Firmicutes. Thus, a combined application of foliar and soil Se proved most conducive for achieving higher yield, grain Se content, and improving bacterial community structure and functional gene expression in rhizosphere soil.

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

Applied and Environmental Microbiology ◽

10.1128/aem.00335-09 ◽

2009 ◽

Vol 75 (15) ◽

pp. 5111-5120 ◽

Cited By ~ 1989

Author(s):

Christian L. Lauber ◽

Micah Hamady ◽

Rob Knight ◽

Noah Fierer

Keyword(s):

Bacterial Community ◽

Soil Ph ◽

Bacterial Communities ◽

Bacterial Community Structure ◽

Spatial Scales ◽

Bacterial Community Composition ◽

Phylogenetic Structure ◽

Soil Bacterial Communities ◽

Soil Bacterial Community Structure ◽

ABSTRACT Soils harbor enormously diverse bacterial populations, and soil bacterial communities can vary greatly in composition across space. However, our understanding of the specific changes in soil bacterial community structure that occur across larger spatial scales is limited because most previous work has focused on either surveying a relatively small number of soils in detail or analyzing a larger number of soils with techniques that provide little detail about the phylogenetic structure of the bacterial communities. Here we used a bar-coded pyrosequencing technique to characterize bacterial communities in 88 soils from across North and South America, obtaining an average of 1,501 sequences per soil. We found that overall bacterial community composition, as measured by pairwise UniFrac distances, was significantly correlated with differences in soil pH (r = 0.79), largely driven by changes in the relative abundances of Acidobacteria, Actinobacteria, and Bacteroidetes across the range of soil pHs. In addition, soil pH explains a significant portion of the variability associated with observed changes in the phylogenetic structure within each dominant lineage. The overall phylogenetic diversity of the bacterial communities was also correlated with soil pH (R2 = 0.50), with peak diversity in soils with near-neutral pHs. Together, these results suggest that the structure of soil bacterial communities is predictable, to some degree, across larger spatial scales, and the effect of soil pH on bacterial community composition is evident at even relatively coarse levels of taxonomic resolution.

Heterotrophic Bacteria Play an Important Role in Endemism of Cephalostachyum pingbianense (Hsueh & Y.M. Yang ex Yi et al.) D.Z. Li & H.Q. Yang, 2007, a Full-Year Shooting Woody Bamboo

Forests ◽

10.3390/f13010121 ◽

2022 ◽

Vol 13 (1) ◽

pp. 121

Author(s):

Tize Xia ◽

Lushuang Li ◽

Bin Li ◽

Peitong Dou ◽

Hanqi Yang

Keyword(s):

Bacterial Community ◽

Soil Microbes ◽

Heterotrophic Bacteria ◽

Ph Value ◽

Germplasm Conservation ◽

Plant Distribution ◽

Significant Difference ◽

Woody Bamboos ◽

The previous studies show soil microbes play a key role in the material and nutrient cycles in the forest ecosystem, but little is known about how soil microbes respond to plant distribution, especially in the soil bacterial community in woody bamboo forests. Cephalostachyum pingbianense (Hsueh & Y.M. Yang ex Yi et al.) D.Z. Li & H.Q. Yang, 2007 is known as the only bamboo species producing shoots all year round in natural conditions. Endemic to the Dawei mountain in Yunnan of China, this species is a good case to study how soil bacteria respond to plant endemic distribution. In this work, we assayed the soil chemical properties, enzyme activity, changes in the bacterial community along the distribution range of the C. pingbianense forest. The results showed that soil nutrients at the range edge were nitrogen-rich but phosphorus-deficient, and soil pH value and soil urease activity were significantly lower than that of the central range. No significant difference was detected in soil bacterial diversity, community composition, and function between the central and marginal range of C. pingbianense forest. Notably, the relative abundance of heterotrophy bacteria, such as Variibacter and Acidothermus, in the soil of the C. pingbianense forest was significantly higher than that of the outside range, which may lead to a higher soil organic carbon mineralization rate. These results imply that abundant heterotrophy bacteria were linked to the endemism and full-year shooting in C. pingbianense. Our study is amongst the first cases demonstrating the important role of heterotrophy bacteria in the distribution formation of endemic woody bamboos in special soil habitats, and provides insight into germplasm conservation and forest management in woody bamboos.