scholarly journals Dynamics of diffusive cell signaling relays

eLife ◽  
2020 ◽  
Vol 9 ◽  
Author(s):  
Paul B Dieterle ◽  
Jiseon Min ◽  
Daniel Irimia ◽  
Ariel Amir

In biological contexts as diverse as development, apoptosis, and synthetic microbial consortia, collections of cells or subcellular components have been shown to overcome the slow signaling speed of simple diffusion by utilizing diffusive relays, in which the presence of one type of diffusible signaling molecule triggers participation in the emission of the same type of molecule. This collective effect gives rise to fast-traveling diffusive waves. Here, in the context of cell signaling, we show that system dimensionality – the shape of the extracellular medium and the distribution of cells within it – can dramatically affect the wave dynamics, but that these dynamics are insensitive to details of cellular activation. As an example, we show that neutrophil swarming experiments exhibit dynamical signatures consistent with the proposed signaling motif. We further show that cell signaling relays generate much steeper concentration profiles than does simple diffusion, which may facilitate neutrophil chemotaxis.

Author(s):  
Paul B. Dieterle ◽  
Jiseon Min ◽  
Daniel Irimia ◽  
Ariel Amir

Cells can communicate with each other by emitting diffusible signaling molecules into the surrounding environment. However, simple diffusion is slow. Even small molecules take hours to diffuse millimeters away from their source, making it difficult for thousands of cells to coordinate their activity over millimeters, as happens routinely during development and immune response. Moreover, simple diffusion creates shallow, Gaussian-tailed concentration profiles. Attempting to move up or down such shallow gradients – to chemotax – is a difficult task for cells, as they see only small spatial and temporal concentration changes. Here, we demonstrate that cells utilizing diffusive relays, in which the presence of one type of diffusible signaling molecule triggers participation in the emission of the same type of molecule, can propagate fast-traveling diffusive waves that give rise to steep chemical gradients. Our methods are general and capture the effects of dimensionality, cell density, signaling molecule degradation, pulsed emission, and cellular chemotaxis on the diffusive wave dynamics. We show that system dimensionality – the size and shape of the extracellular medium and the distribution of the cells within it – can have a particularly dramatic effect on wave initiation and asymptotic propagation, and that these dynamics are insensitive to the details of cellular activation. As an example, we show that neutrophil swarming experiments exhibit dynamical signatures consistent with the proposed signaling motif. Interpreted in the context of these experiments, our results provide insight into the utility of signaling relays in immune response.


RSC Advances ◽  
2016 ◽  
Vol 6 (81) ◽  
pp. 78161-78169 ◽  
Author(s):  
Jiajun Hu ◽  
Yiyun Xue ◽  
Jixiang Li ◽  
Lei Wang ◽  
Shiping Zhang ◽  
...  

CO2 fixation efficiency of the devised synthetic microbial consortia with both autotrophic–autotrophic and autotrophic–heterotrophic microbial interactions were higher than the sum of theoretical CO2 fixation efficiency of the microbial components.


2020 ◽  
Vol 11 (1) ◽  
Author(s):  
Razan N. Alnahhas ◽  
Mehdi Sadeghpour ◽  
Ye Chen ◽  
Alexis A. Frey ◽  
William Ott ◽  
...  

2019 ◽  
Vol 49 ◽  
pp. 52-59 ◽  
Author(s):  
Jorge F. Vázquez-Castellanos ◽  
Anaïs Biclot ◽  
Gino Vrancken ◽  
Geert RB Huys ◽  
Jeroen Raes

2012 ◽  
Vol 23 (5) ◽  
pp. 798-802 ◽  
Author(s):  
Jasmine Shong ◽  
Manuel Rafael Jimenez Diaz ◽  
Cynthia H Collins

F1000Research ◽  
2016 ◽  
Vol 5 ◽  
pp. 2036 ◽  
Author(s):  
Geneviève Dupont ◽  
Laurent Combettes

Ca2+ oscillations, a widespread mode of cell signaling, were reported in non-excitable cells for the first time more than 25 years ago. Their fundamental mechanism, based on the periodic Ca2+ exchange between the endoplasmic reticulum and the cytoplasm, has been well characterized. However, how the kinetics of cytosolic Ca2+ changes are related to the extent of a physiological response remains poorly understood. Here, we review data suggesting that the downstream targets of Ca2+ are controlled not only by the frequency of Ca2+ oscillations but also by the detailed characteristics of the oscillations, such as their duration, shape, or baseline level. Involvement of non-endoplasmic reticulum Ca2+ stores, mainly mitochondria and the extracellular medium, participates in this fine tuning of Ca2+ oscillations. The main characteristics of the Ca2+ exchange fluxes with these compartments are also reviewed.


2016 ◽  
Vol 1 (2) ◽  
pp. 109-117 ◽  
Author(s):  
Xiaoqiang Jia ◽  
Chang Liu ◽  
Hao Song ◽  
Mingzhu Ding ◽  
Jin Du ◽  
...  

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