Stronger effect of maize rhizosphere than phosphorus fertilization on soil phosphatase activity and associated bacterial communities in acidic soil: distinct influences on phoC- and phoD-harboring bacteria

Aims The bacteria phoC and phoD genes encode acid and alkaline phosphatase (ACP and ALP), respectively, which mineralize organic phosphorus (P) to inorganic P. The relative importance of P fertilization and the plant rhizosphere on soil phosphatase activities and associated bacterial communities in acidic soils are poorly understood; whether phoC- and phoD-harboring bacterial communities display different responses remains undetermined. Methods Maize was grown in acidic soil supplemented with 0 (P0), 20 (P20), and 200 (P200) mg P2O5 kg− 1 for 42 days. Maize biomasses, plant nutrients, soil properties, phosphatase activities, and associated bacterial abundance and community composition were determined. Results Relative to bulk soils, rhizosphere showed increased ACP and ALP activities, phoC and phoD gene abundance, but these effects were reduced in strength with P200 treatment, except for phoC gene abundance. The rhizosphere effect increased α-diversity of phoC-harboring bacteria under P fertilization but reduced α-diversity of phoD-harboring bacteria under P0 and P20 treatments. The rhizosphere significantly influenced both phoC- and phoD-harboring bacterial community compositions, with stronger effect on phoD-harboring bacteria; while P fertilization affected phoD-harboring bacteria but not phoC-harboring bacteria. Immigrated and extinct species play important roles in reshaping phoC- and phoD-harboring bacterial communities, respectively, in response to the rhizosphere effect. Conclusions Compared with P fertilization, the maize rhizosphere more strongly influenced soil phosphatase activities and phoC- and phoD-harboring bacterial communities in acidic soils, with phoD-harboring bacteria responding more strongly to the rhizosphere effect and P fertilization. Notably, the strength of the rhizosphere effect heavily relied on P fertilization level.

Rhizosphere Effects of Maize and Wheat Increase Soil Organic and Inorganic Carbon Release in Carbonate-Rich Soils: A Three-Source 13C Partitioning Study

In carbonate-rich soils with plants, CO2 emissions from the rhizosphere may come from as many as three sources, that is, root-derived respiration, decomposition of soil organic carbon (SOC), and dissolution of soil inorganic carbon (SIC), so partitioning of CO2 emissions by source is important to accurately quantify the rhizosphere effect (RE). Because of limited methods for three-source partitioning of soil CO2, how living roots affect SOC and SIC release (RE) has not yet been clarified, and this urgently needs to be evaluated. In this study, the RE of summer maize and winter wheat on SOC decomposition and SIC dissolution was investigated at three phenological stages in pot experiments with the aid of 13CO2 pulse labeling combined with 13C natural abundance techniques. We found that the contribution of SIC dissolution to CO2 emissions from unplanted soils ranged from 25 to 44%. As crop growth progressed, the maize rhizosphere effect on SOC- and SIC-derived CO2 emissions increased from 14 and 74% at the elongation stage to 84 and 268% at the grain filling stage compared to that in unplanted soils, respectively, while the wheat rhizosphere effect on SOC- and SIC-derived CO2 emissions increased from 51 and 34% at the elongation stage to 77 and 76% at the grain filling stage. We concluded that the rhizosphere effects increased SOC and SIC release over the entire growing season of maize (by 54% for SOC and 159% for SIC) and wheat (by 64 and 49%) compared to those in unplanted soils, indicating that ignoring SIC dissolution in carbonate-rich soils with plants will result in overestimation of SOC decomposition.

The Himalayan Onion (Allium wallichii Kunth) Harbors Unique Spatially Organized Bacterial Communities

Plant-associated microorganisms are known to contribute with various beneficial functions to the health and productivity of their hosts, yet the microbiome of most plants remains unexplored. This especially applies to wild relatives of cultivated plants, which might harbor beneficial microorganisms that were lost during intensive breeding. We studied bacterial communities of the Himalayan onion (Allium wallichii Kunth), a wild relative of onion native to mountains in East Asia. The bacterial community structure was assessed in different plant microhabitats (rhizosphere, endosphere, anthosphere) by sequencing of 16S rRNA gene fragment amplicons. Targeted bioinformatic analyses were implemented in order to identify unique features in each habitat and to map the overall community in the first representative of the Amaryllidaceae plant family. The highest bacterial diversity was found for bulk soil (Shannon index, H′ 9.3) at the high-altitude sampling location. It was followed by the plant rhizosphere (H′ 8.9) while communities colonizing flowers (H′ 6.1) and the endosphere (H′ 6.5 and 5.6) where less diverse. Interestingly, we observed a non-significant rhizosphere effect. Another specificity of the microbiome was its high evenness in taxonomic distribution, which was so far not observed in plant microbiomes. Pseudomonas was identified among additional 10 bacterial genera as a plant-specific signature. The first insights into the microbiome of a plant in the widespread Allium genus will facilitate upcoming comparisons with its domesticated relatives while additionally providing a detailed microbiome mapping of the plant’s microhabitats to facilitate bioresource mining.