Optimization of Nitrogen Demand in Vegetables by Different Impacts on Autotrophic and Heterotrophic Nitrification

Aims The understanding of the interactions between N transformations and N uptake by plants in greenhouse soils with large N accumulation is still not clear. The aim is to understand the plant- soil interactions (vegetables) on N transformations with respect to N supply. Methods 15N tracing studies were conducted in two greenhouse soils to simultaneously quantify soil gross N transformation and plant N uptake rates using the Ntraceplant tool. Results There were significant feedbacks between vegetable N uptake and soil gross N transformation rates, whether soil N accumulation occurred or not. Plant NO3– uptake rates (UNO3) were higher than the NH4+ uptake rates (UNH4), which is consistent with the NO3–-preference of the vegetable plants studied. While UNH4 was still responsible for 6-49% of total N uptake rates, significantly negative relationships between UNH4 and NH4+ immobilization rate and autotrophic nitrification rate (ONH4) were observed. ONH4 was significantly inhibited in the presence of plants and decreased with time. ONH4 (1.11 mg N kg-1 d-1) was much lower than UNO3 (8.29 mg N kg-1 d-1) in the presence of plants. However, heterotrophic nitrification rate (ONrec), which ranged from 0.10 to 8.11 mg N kg-1 d-1 was significantly stimulated and was responsible for 5-97% of NO3– production in all plant treatments, providing additional NO3– to meet N requirements of plants and microorganisms.Conclusions The management of organic N fertilizers should be improved to stimulate inorganic N production via heterotrophic nitrification in greenhouse cultivation.

Dominant Tree Mycorrhizal Associations Affect Soil Nitrogen Transformation Rates Through Mediating Microbial Abundances in a Temperate Forest

Tree-fungal symbioses are increasingly recognized to affect soil nitrogen (N) transformations, yet the role of soil microbes in the process is largely unclear. Soil microbes directly interact with trees and are a primary driver of many N transformation processes. Here, we explored the linkage among tree mycorrhizal associations, soil microbes and N transformation rates in a temperate forest of Northeast China. Across a gradient of increasing ectomycorrhizal (ECM) tree dominance, we measured soil acid-base chemistry, bacterial and fungal abundances, N-hydrolyzing enzyme activities, abundances and community composition of ammonia-oxidizing archaea (AOA) and bacteria, and net N mineralization and net nitrification rates. Results showed that soil pH, exchangeable base cations, inorganic N concentrations and N transformation rates decreased with increasing ECM tree dominance. The ECM tree dominance was negatively related to soil bacterial and AOA amoA gene abundances, and positively to soil fungal abundances and β-N-acetylglucosaminidase activities. These shifts in soil microbial abundances and enzyme activities along the mycorrhizal gradient were linked with the increase in soil acidity with increasing ECM tree dominance. Structural equation models revealed that ECM tree dominance was not directly related to N transformation rates, but indirectly to net N mineralization rates via affecting bacterial and fungal abundances, and indirectly to net nitrification rates via influencing AOA amoA gene abundances. Collectively, our results indicate that soil microbes provide a mechanistic link between mycorrhizal associations and soil N transformations, and suggest that shifts in forest mycorrhizal associations under global change could have profound consequences for biogeochemical cycling of temperate forests.

Trophic status and local conditions affect microbial potential for denitrification versus internal nitrogen cycling in lake sediments

The nitrogen (N) cycle is of global importance as N is an essential element and a limiting nutrient in terrestrial and aquatic ecosystems. Excessive anthropogenic N fertilizer usage threatens sensitive downstream aquatic ecosystems. Although freshwater lake sediments remove N through various microbial transformation processes, few studies have investigated the microbial communities involved. In an integrated biogeochemical and microbiological study on a eutrophic and oligotrophic lake, we estimated N removal rates in the sediments from porewater concentration gradients. Simultaneously, the abundance of different microbial N transformation genes was investigated using metagenomics on a seasonal and spatial scale. We observed that contrasting nutrient concentrations in the sediments were reflected in distinct microbial community compositions and significant differences in the abundance of various N transformation genes. Within each lake, we observed a more pronounced spatial than seasonal variability. The eutrophic Lake Baldegg showed a higher denitrification potential with higher nosZ gene (N2O reductase) abundance and higher nirS:nirK (nitrite reductase) ratio, indicating a greater capacity for complete denitrification. Correspondingly, this lake had a higher N removal efficiency. The oligotrophic Lake Sarnen, in contrast, had a higher potential for DNRA and nitrification, and specifically a high abundance of Nitrospirae, including some capable of comammox. In general, the oligotrophic lake ecosystems had a higher microbial diversity, thus acting as an important habitat for oligotrophic microbes. Our results demonstrate that knowledge of the genomic N transformation potential is important for interpreting N process rates and understanding the limitations of the N cycle response to environmental drivers.