Hunting and Deforestation: A Threat to the Existence of the Niger Delta Red Colobus Monkey (Procolobus epieni)

The Niger Delta in Nigeria is the largest wetland in Africa and the third largest mangrove forest in the world. The region is known for its richness in biodiversity as well as its oil and gas resources. Due to the high level of oil exploration, deforestation, hunting and insecurities in these areas, the wildlife especially endemic species like the Niger Delta red colobus becomes vulnerable to extinction. Most researches on their range have noted a significant reduction in their population and range distribution. Hence, up-to-date information on their current status is paramount to ensure proper and urgent conservation measures. Data was obtained through the use of field survey and secondary data. The species was recently discovered endemic to Niger delta region in Nigeria for about 23 years ago and recent studies observed that there has been a drastic reduction in their population and a shift in the range they formally occupied faulting this to anthropogenic activities. This study revealed that the location is under intense timber extraction and hunting and as a result, one of the location in the Apoi creek where it was reported to be present, record no species of Red colobus monkey. Only the red capped mangabey monkey (3) were sighted at the location with some evidence of alligator (10). Result also revealed that most of the communities (age ≤ 30) do not know or have seen the species. The situation at the location is exacerbated because of the level of poverty and insecurity in the areas. Going by the evidence of intense timber extraction and hunting at the location, the number of this species may have drastically reduced compared to what it was formally projected (±200 individuals). It is therefore strongly recommended that a follow up of the research is done in other location where it was reported to be present.

The implications of vehicle collisions for the Endangered endemic Zanzibar red colobus Piliocolobus kirkii

Roads affect wildlife in a variety of negative ways. Road ecology studies have mostly concentrated on areas in the northern hemisphere despite the potentially greater impact of roads on biodiversity in tropical habitats. Here, we examine 4 years (January 2016–December 2019) of opportunistic observations of mammalian roadkill along a road intersecting Jozani-Chwaka Bay National Park, Unguja, Zanzibar. In particular, we assess the impact of collisions on the population of an endemic primate, the Endangered Zanzibar red colobus Piliocolobus kirkii. Primates accounted for the majority of roadkill in this dataset. Monthly rainfall was not associated with roadkill frequency for mammals generally, nor for the Zanzibar red colobus. No single age–sex class of colobus was found dead more often than expected given their occurrence in the local population. The overall effect of roadkill on colobus populations in habitats fragmented by roads is unknown given the lack of accurate, long-term life history data for this species. Our findings suggest that mortality from collisions with vehicles in some groups of colobus is within the range of mortality rates other primates experience under natural predation. Unlike natural predators, however, vehicles do not kill selectively, so their impact on populations may differ. Although a comparison with historical accounts suggests that the installation of speedbumps along the road near the Park's entrance has led to a significant decrease in colobus roadkill, further actions to mitigate the impact of the road could bring substantial conservation benefits.

Immunogenetic response to a malaria-like parasite in a wild primate

Malaria is infamous for the massive toll it exacts on human life and health. In the face of this intense selection, many human populations have evolved mechanisms that confer some resistance to the disease, such as sickle-cell hemoglobin or the Duffy null blood group. Less understood are adaptations in other vertebrate hosts, many of which have a longer history of co-evolution with malaria parasites. By comparing malaria resistance adaptations across host species, we can gain fundamental insight into host-parasite co-evolution. In particular, understanding the mechanisms by which non-human primate immune systems combat malaria may be fruitful in uncovering transferable therapeutic targets for humans. However, most research on primate response to malaria has focused on a single or few loci, typically in experimentally-infected captive primates. Here, we report the first transcriptomic study of a wild primate response to a malaria-like parasite, investigating gene expression response of red colobus monkeys (Piliocolobus tephrosceles) to natural infection with the malaria-like parasite, Hepatocystis. We identified colobus genes with expression strongly correlated with parasitemia, including many implicated in human malaria and suggestive of common genetic architecture of disease response. For instance, the expression of ACKR1 (alias DARC) gene, previously linked to resistance in humans, was found to be positively correlated with parasitemia. Other similarities to human parasite response include induction of changes in immune cell type composition and, potentially, increased extramedullary hematopoiesis and altered biosynthesis of neutral lipids. Our results illustrate the utility of comparative immunogenetic investigation of malaria response in primates. Such inter-specific comparisons of transcriptional response to pathogens afford a unique opportunity to compare and contrast the adaptive genetic architecture of disease resistance, which may lead to the identification of novel intervention targets to improve human health.Author SummaryThe co-evolutionary arms race between humans and malaria parasites has been ongoing for millennia. Fully understanding the evolved human response to malaria is impossible without comparative study of parasites in our non-human primate relatives. Though laboratory primates are fruitful models, the complexity of wild primates infected in a natural transmission system may be a more suitable comparison for contextualizing malaria infections in human patients. Here, we investigate the genetic mechanisms underlying the immune response to Hepatocystis, a close relative of human-infective malaria, in a population of wild Ugandan red colobus monkeys. We find that the genes involved have considerable overlap with those active in human malaria patients. Like Plasmodium, Hepatocystis induces changes in blood cell type and may cause the host to produce blood components outside of the bone marrow or alter metabolism related to the production of lipids. Our work helps to identify the genetic mechanisms underlying the arms race between primates and malaria parasites, providing fundamental evolutionary insight. Such comparative work on the interaction between wild non-human primates and malaria parasites can identify ways in which primates have evolved resistance to malaria parasites, and further investigation of such implicated genes may lead to novel potential therapeutic and vaccine targets.

The impact and implications of vehicle collisions on the endangered and endemic Zanzibar red colobus (Piliocolobus kirkii)

Roads can affect wildlife in a variety of negative ways. Studies of road ecology have mostly concentrated in the northern hemisphere despite the potentially greater impact on biodiversity that roads may have in tropical habitats. Here, we examine a 4-year opportunistic dataset (January 2016 – December 2019) on mammalian roadkill observed along a road intersecting Jozani-Chwaka Bay National Park, Unguja, Zanzibar. In particular, we assess the impact of collisions on the population of an endangered and endemic primate, the Zanzibar red colobus (Piliocolobus kirkii). Primates accounted for the majority of roadkill. Monthly rainfall variation was not associated with roadkill frequency for mammals and specifically for the Zanzibar red colobus. No single age-sex class of colobus was found dead more often than expected given their availability in the local population. The exact effect of roadkill on colobus populations in habitats fragmented by roads is unknown given the lack of accurate, long-term life history data for this species. However, the frequency of kills documented in this study suggests further mitigation measures may be important. Our data show that mortality from collisions with vehicles in some groups of colobus are comparable to rates of mortality experienced by other primate populations from natural predation. Unlike natural predators, however, vehicles are not ‘selective’ in their targeting of ‘prey’. The long-term implications of such a ‘predation regime’ on this species remain to be established.

Genomic and transcriptomic evidence for descent from Plasmodium and loss of blood schizogony in Hepatocystis parasites from naturally infected red colobus monkeys

ABSTRACTHepatocystis is a genus of single-celled parasites infecting monkeys, bats and squirrels. Although thought to descend from malaria parasites (Plasmodium spp.), Hepatocystis spp. are thought not to undergo replication in the blood – the part of the Plasmodium life cycle which causes the symptoms of malaria. Furthermore, Hepatocystis is transmitted by midges, not mosquitoes. Comparative genomics of Hepatocystis and Plasmodium species therefore presents an opportunity to better understand some of the most important aspects of malaria parasite biology. We were able to generate a draft genome for Hepatocystis using DNA sequencing reads from the blood of a naturally infected red colobus monkey. We provide robust phylogenetic support for Hepatocystis as a sister group to Plasmodium parasites infecting rodents. We show transcriptomic support for a lack of replication in the blood and genomic support for a complete loss of a family of genes involved in red blood cell invasion. Our analyses highlight the rapid evolution of genes involved in parasite vector stages, revealing genes that may be critical for interactions between malaria parasites and mosquitoes.

Cercopithecine and Colobine Abundance Across Protected and Unprotected Land in the Greater Mahale Ecosystem, Western Tanzania

Most primates live in unprotected land where abundances and threats may differ from those in protected areas. We therefore need to establish population densities in both unprotected and protected areas to effectively inform conservation planning. The Greater Mahale Ecosystem in western Tanzania is a region of mixed protected status with seven cercopithecine and colobine species: blue (Cercopithecus mitis doggetti), red-tailed (C. ascanius schmidi), and vervet (Chlorocebus pygerythrus) monkeys; ashy red colobus (Piliocolobus tephrosceles); black-and-white colobus (Colobus angolensis); and olive (Papio anubis) and yellow (P. cynocephalus) baboons. These species may be threatened by increasing human activity; however, except for ashy red colobus, no data on local abundances are available. We walked over 350 km of line transects in legally protected (Village Forest Reserves) and unprotected general land between August 2011 and October 2012 to estimate densities of primates and human activity. Primate densities were consistently low across the Greater Mahale Ecosystem. Blue and red-tailed monkey and ashy red colobus densities were especially low compared to populations in predominantly forested landscapes. Primate and human activity densities did not differ significantly inside and outside of reserves. Low primate densities could be natural responses to the lower proportions and quality of riparian forest habitat in the region. High levels of human activity and the absence of significantly higher primate densities in reserves suggest unprotected land could provide important refuges for primates in the Greater Mahale Ecosystem. This result further reinforces a broad need to include unprotected areas in primate conservation strategies.

Genome-Wide Patterns of Gene Expression in a Wild Primate Indicate Species-Specific Mechanisms Associated with Tolerance to Natural Simian Immunodeficiency Virus Infection

Over 40 species of nonhuman primates host simian immunodeficiency viruses (SIVs). In natural hosts, infection is generally assumed to be nonpathogenic due to a long coevolutionary history between host and virus, although pathogenicity is difficult to study in wild nonhuman primates. We used whole-blood RNA-seq and SIV prevalence from 29 wild Ugandan red colobus (Piliocolobus tephrosceles) to assess the effects of SIV infection on host gene expression in wild, naturally SIV-infected primates. We found no evidence for chronic immune activation in infected individuals, suggesting that SIV is not immunocompromising in this species, in contrast to human immunodeficiency virus in humans. Notably, an immunosuppressive gene, CD101, was upregulated in infected individuals. This gene has not been previously described in the context of nonpathogenic SIV infection. This expands the known variation associated with SIV infection in natural hosts and may suggest a novel mechanism for tolerance of SIV infection in the Ugandan red colobus.