TMK-based cell-surface auxin signalling activates cell-wall acidification

The phytohormone auxin controls many processes in plants, at least in part through its regulation of cell expansion1. The acid growth hypothesis has been proposed to explain auxin-stimulated cell expansion for five decades, but the mechanism that underlies auxin-induced cell-wall acidification is poorly characterized. Auxin induces the phosphorylation and activation of the plasma membrane H+-ATPase that pumps protons into the apoplast2, yet how auxin activates its phosphorylation remains unclear. Here we show that the transmembrane kinase (TMK) auxin-signalling proteins interact with plasma membrane H+-ATPases, inducing their phosphorylation, and thereby promoting cell-wall acidification and hypocotyl cell elongation in Arabidopsis. Auxin induced interactions between TMKs and H+-ATPases in the plasma membrane within seconds, as well as TMK-dependent phosphorylation of the penultimate threonine residue on the H+-ATPases. Our genetic, biochemical and molecular evidence demonstrates that TMKs directly phosphorylate plasma membrane H+-ATPase and are required for auxin-induced H+-ATPase activation, apoplastic acidification and cell expansion. Thus, our findings reveal a crucial connection between auxin and plasma membrane H+-ATPase activation in regulating apoplastic pH changes and cell expansion through TMK-based cell surface auxin signalling.

Expansive Growth vs. pH Reflects a Poisson Point Process of Binding/Unbinding Events in Plant Cell Walls

The paramount role of $$\mathrm{pH}$$ pH and temperature $$\left(T\right)$$ T in the expansive growth of a plant coleoptile/hypocotyl non-meristematic zone or plant and fungal cells was examined within the framework of the underlying chemical bond statistics in order to reproduce an experimental plot of growth vs. $$\mathrm{pH}$$ pH . Here, according to the definition, $$\mathrm{pH}=\mathrm{pH}\left({\mu }_{{\mathrm{H}}^{+}}\left(T\right), T\right)$$ pH = pH μ H + T , T is considered as a function of the chemical potential of the H+ (hydronium) ions ($${\mu }_{{\mathrm{H}}^{+}})$$ μ H + ) , as well as an implicit and explicit function of $$T$$ T . The derivation of the $$\mathrm{pH}$$ pH and $$T$$ T dependent expansive growth distribution from the Poisson statistics of the “tethers” that reproduce the chemical bonds between microfibrils was determined. The probability distribution for the attachment/detachment/reattachment events of the tethers that are connected to the microfibrils in the elongation zone was obtained. The two distinct but interrelated modes of the expansive growth, which are known as “acid growth” and “auxin growth” were distinguished in the analytic model, while the acid growth hypothesis was verified and confirmed at the semi-empirical and microscopic levels for the first time. Moreover, further perspectives, in which the macroscopic variables $$\left(P, V, T\right)$$ P , V , T with $$P$$ P standing for the turgor pressure and $$V$$ V for the cell volume, and the microscopic variables, $${E}^{{\varvec{d}},{\varvec{r}}}$$ E d , r , which represent the binding energies of the detachment/reattachment events at the expense of ATP energy, and $${\mu }_{{\mathrm{H}}^{+}}$$ μ H + can occur simultaneously, were identified. With a few assumptions that are partly based on experimental data it was possible to synthesise a link between the microscopic, explicit statistical explanation of bond dynamics and the macroscopic rheological properties of the cell wall at a given $$\mathrm{pH}$$ pH and temperature. A statistical description that predicted the importance of $$\mathrm{pH}$$ pH and temperature-dependent chemical potential of the H+ ions in microscopic events that result in growth would be supposedly applicable across scales.

Building optimal 3-drug combination chemotherapy regimens to eradicate Mycobacterium tuberculosis in its slow growth acid phase

Mycobacterium tuberculosis (Mtb) metabolic state affects the response to therapy. Quantifying the effect of antimicrobials in the acid- and nonreplicating-metabolic phases of Mtb growth will help to optimize therapy for tuberculosis. As a brute-force approach to all possible drug combinations against Mtb in all different metabolic states is impossible, we have adopted a model-informed strategy to accelerate the discovery. Using multiple concentrations of each drug in time kill studies, we examined single-, two- and three-drug combinations of pretomanid, moxifloxacin, and bedaquiline plus its active metabolite against Mtb in its acid-phase metabolic state. We used a nonparametric modeling approach to generate full distributions of interaction terms between pretomanid and moxifloxacin for susceptible and less-susceptible populations. From the model, we could predict the 95% confidence interval of the simulated total bacterial population decline due to the 2-drug combination regimen of pretomanid and moxifloxacin and compare this to observed declines with 3 drug regimens. We found that the combination of pretomanid and moxifloxacin at concentrations equivalent to average or peak human concentrations effectively eradicated Mtb in its acid growth phase and prevented emergence of less susceptible isolates. The addition of bedaquiline as a third drug shortened time to total and less susceptible bacterial suppression by 8 days compared to the 2-drug regimen, which was significantly faster than the 2-drug kill.

ppe51 variants promote non-replicating Mycobacterium tuberculosis to grow at acidic pH by selectively promoting glycerol uptake

In defined media supplemented with single carbon sources, Mycobacterium tuberculosis exhibits carbon source specific growth restriction. When supplied glycerol as the sole carbon source at pH 5.7, Mtb establishes a metabolically active state of nonreplicating persistence known as acid growth arrest. We hypothesized that acidic growth arrest on glycerol is not a metabolic restriction, but rather an adaptive response. To test this hypothesis, we conducted forward genetic screens that identified several Mtb mutants that could grow under these restrictive conditions. All of the mutants were mapped to the ppe51 gene and resulted in three amino acid substitution, S211R, E215K, and A228D. Expression of the PPE51 variants in Mtb promoted growth at acidic pH showing that the mutant alleles are sufficient to cause the dominant gain-of-function, enhanced acid growth (eag) phenotype. Testing growth on other single carbon sources showed the PPE51 variants specifically enhanced growth on glycerol, suggesting ppe51 plays a role in glycerol uptake. Using radiolabeled glycerol, enhanced glycerol uptake was observed in Mtb expressing the PPE51 (S211R) variant, with glycerol overaccumulation in triacylglycerol. Notably, the eag phenotype is deleterious for growth in macrophages, where the mutants have selectively faster replication and reduced in virulence in activated macrophages as compared to resting macrophages. Recombinant PPE51 protein exhibited differential thermostability in the WT or S211R variants in the presence of glycerol, supporting the eag substitutions alter PPE51-glycerol interactions. Together, these findings support that PPE51 variants selectively promote glycerol uptake and that slowed growth at acidic pH is an important adaptive mechanism required for macrophage pathogenesis.

Some New Methodological and Conceptual Aspects of the “Acid Growth Theory” for the Auxin Action in Maize (Zea mays L.) Coleoptile Segments: Do Acid- and Auxin-Induced Rapid Growth Differ in Their Mechanisms?

Two arguments against the “acid growth theory” of auxin-induced growth were re-examined. First, the lack of a correlation between the IAA-induced growth and medium acidification, which is mainly due to the cuticle, which is a barrier for proton diffusion. Second, acid- and the IAA-induced growth are additive processes, which means that acid and the IAA act via different mechanisms. Here, growth, medium pH, and membrane potential (in some experiments) were simultaneously measured using non-abraded and non-peeled segments but with the incubation medium having access to their lumen. Using such an approach significantly enhances both the IAA-induced growth and proton extrusion (similar to that of abraded segments). Staining the cuticle on the outer and inner epidermis of the coleoptile segments showed that the cuticle architecture differs on both sides of the segments. The dose-response curves for the IAA-induced growth and proton extrusion were bell-shaped with the maximum at 10−4 M over 10 h. The kinetics of the IAA-induced hyperpolarisation was similar to that of the rapid phase of the IAA-induced growth. It is also proposed that the K+/H+ co-transporters are involved in acid-induced growth and that the combined effect of the K+ channels and K+/ H+ co-transporters is responsible for the IAA-induced growth. These findings support the “acid growth theory” of auxin action.

TMK-based cell surface auxin signaling activates cell wall acidification in Arabidopsis

The phytohormone auxin controls a myriad of processes in plants, at least in part through its regulation of cell expansion. The "acid growth hypothesis" has been proposed to explain auxin-stimulated cell expansion for five decades, but the mechanism underlying auxin-induced cell wall acidification is poorly characterized. Auxin induces the phosphorylation and activation of the plasma membrane (PM) H+-ATPase that pumps protons into the apoplast, yet how auxin activates its phosphorylation remains elusive. Here, we show that the transmembrane kinase (TMK) auxin signaling proteins interact with PM H+-ATPases and activate their phosphorylation to promote cell wall acidification and hypocotyl cell elongation in Arabidopsis. Auxin induced TMK's interaction with H+-ATPase on the plasma membrane within 1-2 minutes as well as TMK-dependent phosphorylation of the penultimate Thr residue. Genetic, biochemical, and molecular evidence demonstrates that TMKs are required for auxin-induced PM H+-ATPase activation, apoplastic acidification, and cell expansion. Thus, our findings reveal a crucial connection between auxin and PM H+-ATPase activation in regulating apoplastic pH changes and cell expansion via TMK-based cell surface auxin signaling.